TCONS_00073831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073831
Unique NameTCONS_00073831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073831 ID=TCONS_00073831|Name=TCONS_00073831|organism=Clytia hemisphaerica|type=transcript|length=1453bp
CGCTCATCCAACTATATGTCTCTGGCTCATTCTGTCGACAATTTCTCAAC
AACATAGACGACGAAGACAGTTGGTATCCAATAGATTATTCGAGCGAATC
TTCTGCTGAACACTCTATTGAGGATGAAACATACAACAAATCACCATTTG
TTTCAGAAAGAAGACAATATGCTGACCCTTTCCAAGAAAACGATATGGAG
CCAAACTTTTATGAAGAAATTGACGAAAATAAGATGGTGGTGGATACATC
ATCGACAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTGAACAAACA
ACCATTTTCCATGTGCTGCGGCTCTGGGCTTTACAACTTGATCACGGAAG
ATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCA
TCTAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGT
CTATGCTCACGAAAAATATGTGGAATGCGACGGTGCTTTGTATTATGTCT
AAATTCTGTTAaatttttataatatatttaataattggagtttttttgga
aaaatttaaaaatacaaaagtgTTCAAATCTCAGAATCGAATAGGCCAAT
TGCAGGCACGATATTGTTCTTAAATGTTCTTAGTTTCAacattctgagcc
ttattgttcccttttaaaaatgtttcaataaagCCCACCGGATTCATGTA
GtcgtgtttttatttgaaaatatagtattaAAGTGTTGTTAAAGTactgt
ttttcctttttcaatcTCAATTACATTTTAAGGagctttttaagatttta
atcaatcaattttttcattctttcaaaatatgtCAGCTTTTCAGGCGCTC
TCAGTCTACTTCACTTCACGGGCGcttaatgaaaattatcaaaaaacacc
cctgtctcgcagatCCGGAAGAACCTCTCAATGGgagtgaaaatttctat
caaaatcccaatAGGCCCCAATAGGGATAGTTTAAAAAGTCCAGTGAGAA
TAGTTTTGGGGtgtagtgtttttttcattgtatttcaaatggggataaaa
aGTCAACCTTTCAGTGCGGTAGAAATTGCAGGGGACGTCGGGACAAAATT
gtagtgaaaaaatttcaagtggtTAGTGGTCTCCGGGTTTGTGACATAGG
GTTGACAAAAGCTAATATCAATCAGGAGTTGATTCTTGTATAATTGATAT
ACAGCATTCTTTTATAAATTAAATGTCAGtaaaataacaaataaaaacCT
TCAATTTAATCTGAACATCTGAACTATACATCTACATCGAGTACCAAATC
AACGGATGCACGGCATTTTAGGTAGAGCGAATAAGGAGAATGAATGTACC
ATGTATAAATCGGGGATCAATGGGGATTTGATTCTCTGTCAGAATTTTTC
TGCCATGTGTCACGAGTGTTGAACCGCCCATCATCCGCCCATCTGTGGGT
GCG
Run BLAST on NCBI

transcript from alignment at scaffold_98:227577..230672-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073831 ID=TCONS_00073831|Name=TCONS_00073831|organism=Clytia hemisphaerica|type=transcript|length=3096bp|location=Sequence derived from alignment at scaffold_98:227577..230672- (Clytia hemisphaerica)
CGCTCATCCAACTATATGTCTCTGGCTCATTCTGTCGACAATTTCTCAAC
AACATAGACGACGAAGACAGTTGGTATCCAATAGATTATTCGAGCGAATC
TTCTGCTGAACACTCTATTGAGGATGAAACATACAACAAATCACCATTTG
TTTCAGAAAGAAGACAATATGCTGACCCTTTCCAAGAAAACGATATGGAG
CCAAACTTTTATGAAGAAATTGACGAAAATAAGATGGTGAGAATCACAGG
CTACGAAAATATACCAGCAGTTCGTCCAACACAAAAACAAGATACAACAG
AAACAGCCACTACAACTGCTGCCCCAACTACACCTCATTCCCATAAACCA
TCTCGCACTAACTCTACTGACCAAACAAAACCTGGAAATCTCGCTAGAAA
ATTGCAAAATGAAGAAGAAGACCCGCTCTGGTTCAAAATACACACACGAA
GACGTAATCATAACAAGAATATCAATATTAATCATAACTCGAATGTTAAT
ATTAACTCGAACCATAATTCCAATTCGAATCACAACTCTAACACAAATGT
CAATATCAACCGTAACTCAAACGTGAATAGCAACTCGAACCATAACTCGA
ACACAAACATCAACGTTAATCAAAACACTTTCAGACCTTTCTACATTGGC
AACTTCCCAAAACACTGGCATATGTGTGAGTTCTAGATATTTCTGACATT
TTCTCTTTTAGCTCTAATACGCACTCCGCAGAAATAATTCGAAACAGGGT
TTTCATAGTGAGATTGTTACAGTGGGCGAAGTAAGGCAACAATCTTGGAA
ATATCTTGAAAATATGATATTTCCATTATACATTTGTAAATATGAAACTA
TGACTTTTCTATATTTCCAAAGTTTAGGAAATATGATATTTCCAAAAGTT
GGAAATATTTTGAAAATATGTTATTTCAATGAATTTCAGGTTTGGAAATA
TCATGAAATAAAAAAAAGTCATATTTTCATATTTACTAAAGTCTGTCTCA
AAATAATTTGCAGCTGATACAAAAATGGGTTGTAACTTTTGATAGAATTC
GAATTAAGTTATGACTTTGTGCTCATTGAAAAGATATTTGTGATTGGAAT
ATTATCAAGCAAATGGTAAATAATTTTTTTTGCTTGATAGTATTCCACTC
ACAAAAATCTTTTCAACAAGCACAAAATCGCAACTTCATTCAAATTCTAT
CAAAAGCTACAGCTAATTTTTGTCTCAGCTGCAAATTATTTTGAGACAGA
CCTTAATGTATAATGCATGGATATCACATTTTCAAATTATTTCCAAGATT
GGAAATCTCTTAATTCGCCCAGTTTTAGTTTTATGGATTGAATAAAACTA
AATCGTGTATCTCGTAATACTTATTTATAGGAATTAGAAAGATCTCCTGT
GATCACTCTGAATACATTTGACATTGTTTTTATCAGGTGGTGGATACATC
ATCGACAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTGAACAAACA
ACCATTTTCCATGTGCTGCGGGTAAGTTAATCTTTTTCAGAAGACAAGAT
TTATTTGAACTGAGAGTCCGTTATGTATTCCAAAACACCTTTTTGACCAT
AGCCGCTAATTGCCGCGCGGACATTTTTTGTCCGTTTCATCCCACTAAAA
CCGTCCCAGTCGTTTTTTTTTTGCACCTTTATAGATAATAGAAAAATGTG
TCAAAAAAAGGATTGGATCGAGTTTAGTGGGATAATTAGATAATTAAATG
ACACGCACCTGACCGCGCGACTACGGTCGAAAAGGTGTATACGCCCTTGT
AATGATCAAAGCTCAGTGTCGATTTTGATTGGCGTTATGAAAATAATGCT
GTGTACTTTTTGAATCTTCCTTTCTTGGCTGGACTAAAAGCCTTTAACGG
ATCAATAAAACAGGGTTATTGTATTTTTGAAGCTATTCTTTTTTCAAACT
GAATTTACTTTCAGCTCTGGGCTTTACAACTTGATCACGGAAGATTGTGT
TTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCATCTAAAA
CAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGTCTATGCT
CACGAAAAATATGTGGAATGCGACGGTGCTTTGTATTATGTCTAAATTCT
GTTAAATTTTTATAATATATTTAATAATTGGAGTTTTTTTGGAAAAATTT
AAAAATACAAAAGTGTTCAAATCTCAGAATCGAATAGGCCAATTGCAGGC
ACGATATTGTTCTTAAATGTTCTTAGTTTCAACATTCTGAGCCTTATTGT
TCCCTTTTAAAAATGTTTCAATAAAGCCCACCGGATTCATGTAGTCGTGT
TTTTATTTGAAAATATAGTATTAAAGTGTTGTTAAAGTACTGTTTTTCCT
TTTTCAATCTCAATTACATTTTAAGGAGCTTTTTAAGATTTTAATCAATC
AATTTTTTCATTCTTTCAAAATATGTCAGCTTTTCAGGCGCTCTCAGTCT
ACTTCACTTCACGGGCGCTTAATGAAAATTATCAAAAAACACCCCTGTCT
CGCAGATCCGGAAGAACCTCTCAATGGGAGTGAAAATTTCTATCAAAATC
CCAATAGGCCCCAATAGGGATAGTTTAAAAAGTCCAGTGAGAATAGTTTT
GGGGTGTAGTGTTTTTTTCATTGTATTTCAAATGGGGATAAAAAGTCAAC
CTTTCAGTGCGGTAGAAATTGCAGGGGACGTCGGGACAAAATTGTAGTGA
AAAAATTTCAAGTGGTTAGTGGTCTCCGGGTTTGTGACATAGGGTTGACA
AAAGCTAATATCAATCAGGAGTTGATTCTTGTATAATTGATATACAGCAT
TCTTTTATAAATTAAATGTCAGTAAAATAACAAATAAAAACCTTCAATTT
AATCTGAACATCTGAACTATACATCTACATCGAGTACCAAATCAACGGAT
GCACGGCATTTTAGGTAGAGCGAATAAGGAGAATGAATGTACCATGTATA
AATCGGGGATCAATGGGGATTTGATTCTCTGTCAGAATTTTTCTGCCATG
TGTCACGAGTGTTGAACCGCCCATCATCCGCCCATCTGTGGGTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045850XLOC_045850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073831-exon-scaffold_98-1575043694:230437..230672TCONS_00073831-exon-scaffold_98-1575043694:230437..230672Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1575043694:229152..229236TCONS_00073831-exon-scaffold_98-1575043694:229152..229236Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1575043694:227577..228708TCONS_00073831-exon-scaffold_98-1575043694:227577..228708Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1510915933:230437..230672TCONS_00073831-exon-scaffold_98-1510915933:230437..230672Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1510915933:229152..229236TCONS_00073831-exon-scaffold_98-1510915933:229152..229236Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1510915933:227577..228708TCONS_00073831-exon-scaffold_98-1510915933:227577..228708Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1491911889:230437..230672TCONS_00073831-exon-scaffold_98-1491911889:230437..230672Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1491911889:229152..229236TCONS_00073831-exon-scaffold_98-1491911889:229152..229236Clytia hemisphaericaexon
TCONS_00073831-exon-scaffold_98-1491911889:227577..228708TCONS_00073831-exon-scaffold_98-1491911889:227577..228708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:227577..230672 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.882807	0.167163	0.108896	0.219683	0.0837837	0	0.0607744	0	0	0	0	0	0	0	0	0	0.0428183	0	0	0	0	0	0.0944665	0.165076	0	0	0	0	0.0876272	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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