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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073830 ID=TCONS_00073830|Name=TCONS_00073830|organism=Clytia hemisphaerica|type=transcript|length=3504bp
AAAGGATGCAAGAAGAGTTGGATTTGGACTAGTAATGAAGCAGGCTGCAT
TGTGGATGAGTTTGCCCACAATGCAGTCACGTTAAGAATTTGGAATGATA
ATTTGTATCAAGCAATATTATGTGATTATTGTCGTTATATTGTagcaaag
aaatgttttttgaagcAAACACTGAAAGTACCCACATTCATGTGTGTGTG
ACATATGTGAAAAATGCTGTTTTTAAGCGTATATGCAATAAGTTACGCTA
CATTTTGTGAGAGTCACTGAGTTTCGGATGAGAAATATTCAGACCTTTAT
GTCatgtttgaaagttttgaatGCAAATCTCATATCAAAATATCGCtctt
caaaattaataaaaacggGGAAGgataaaaaagggaaatactATATAAAT
AGTTATTTTGTGATAACGTATGCTTGGTCTTTTTATTAGGTTTTAGTGTC
AAGGCCAATACTATTCTAAGTTATTAGTTGTCTGTTCACGCAGAACATGT
GCTATCGCTACAGTTGTTTAAGGAAGAAAGTGTACAGTGACAGTATTTTT
ACTATCGTTCATCGCGCTTGCGCAGTATAAAACTAAAAGAGCGTGCCCGG
TACGGAGAAAGAAGAATTGGCagtaagaaaaacaaatttgaaaagcGTCA
AGTGAATTATTCACAAGGATAGTGTTGAAGAATTTATAAACAACACATTT
CTGCTAATACATGCGTAAATGGtttcattttcgcgaaaaatttGCTATAA
GAAGAATTGAGTTTGTGAAATTGAGTTCATATTGAACACGCTTTTGGTGA
GTGAACTGTTAAAAACATCGTGAAGATGTATCTATCTTTATTTCTTGGAT
TGCTGTTTGCAGTCACCACGCCTTGTTCAAGTCACCTTACAAAGCATTAC
ATGTCTCATAAAGAACTTGAAAATCATCTGCAGAGCTTGACATCAATGTT
TCCCGATATTTCCCGAGTATACAGTATCGGGGAGAGCGTAAAAGGAAGAA
GTTTACTTGTTATGGAAATTTCATCGAACCCTGGCGAACACGAGTTTCTG
GAACCAGAATTCAAATATGTTGGTAACATGCACGGAGATGAGACAGTGGG
TCGGCAAATTCTTTTGAACTTAATTGAACTGTTGTTGTGGAACTATACTT
CCAACCCTGCGATCAAACAACTGGTTGATACAACAAGGATACACATTCTC
TGCACCATGAATCCTGATGGTTTCAACAAAGCACAAAAAACACAAAACGA
TTATTTACCAGATGGCCGGAACAATGCAAATAATGTCGATTTGAACAGAA
ACTTCCCAGACCCTTTTGTGCCATCATATTTCAGTAAGGTTCGAATGCAA
AAAGAAACAAAGGCAGTTATAGACTGGCTGCATTCACTCCCATTCGTTCT
CTCCGCTAACTTGCACGGTGGAGCAGTCGTGGTAAACTATCCTTATGATA
ACTTCAAAGAGTTTCAGCGTTATTTATTTTTCGGTCGTTCGATTTATGCC
GGGACTCCAGATGATGACGTTTTCAAATCGATTTCGAAGACGTATTCAAA
GAGTCATCATAACATGAGTAAAGGGAAACATTGCGGAGAAGACAAGTTTG
TTGATGGAATCACTAATGGTGCAGAATGGTACACAGTGAGTGGAGGGATG
CAAGATTACAATTATCGATACACCAACTGTTTTGAAATCCTGATCGAGCT
AAGCTGTACAAAATTGGTCCCTGAAAAAGACCTTCTTATGTATTGGGAAC
ACAATCGAAAAGCACTGTTGAGTTATCTCGCTCGTATTCACATGGGAGTC
AAAggGGTTGTTCTGACACATGACCATGAACCAATCGAAGGTGCAAAGAT
TCTAATCCACGATcgaacaaaagaaatcaaaacatggAGAACTGGGGAAT
ATTGGCGATTATTGTTGCCTGGAAACTATCAGCTCGAAGTTTCGGCTGAC
GGTTATTTTACTCAATGGAAAAATATCACTGTTACAGAAGGAGAAGTGAC
GAGAATggattttaatttatttgagaGTGCATCGTTGAGAATTTCACCTG
CAACGAGCATTCTTTTTGTACATATGATTATTGCATTCCTGCTAGCTTGA
CCTctatattcaactttttatacCTCAATGTAAATAGCTATCAAATCTCT
TAATTTTATCATAAATAATTTATTTCGTTTTTAATATACCGACGCAATAC
ACCgaacttaaaaaaaaagctttctCGTTTGCTGtaacataaaattttaa
acattgacGTCATTGCGTTTAAAACGTTTGTTTCGTttgtttgtgacgtc
ataactagTAGCATGCTGTTGGAAACgaaacaaaaacaatgaaaaagaaa
tacttctaaCTTTTAAGATTTAAACTTGTTAACTTcctgttgataaaata
tatttgtTCCTTTTGCCCTATTTACTCAAAAGCGAgcaaaaaatacttta
aaatttacaatttataaATACCTTcgtgttttggaaaaagttatttttgt
tttctttctgcAAATAGTTTACAGACGATCACGTTGTTTATCAACATTCG
ATTAGGGATCAATAGAACGCCCCTCCCCTTACCCCTCATTCTGAATAATG
GCCAATTATCAGGTTGTCTCTGCTAAGATAGATAGTTACGGTTGAGCCAA
AGGCGAAAAAAATTTGTTACCTTTCACAAGGCAaatatattgaataaaaa
tcGAGATTTACAATATATTTAGTGAAGTATTTATAGCATAATCCGTAAAA
AATTGAcctattttattcaaaaaacaatatATAATTGATTACATTATAGG
ATTGTTTAAAACAGCATTCTGGTCAGCATATTATACGTGATTTCTTGACA
CCCATACAATTTAGTTTGCAATAAGCAGAAGACATGCAATGAAAAGGCAG
GTGTTGGTAATGAGTCTCTCTTCATTTGAAATCAAGGTTTCCATAGCCTC
CTCTTTTCGTTGAAAGTGAAACACTTTCGAGGACTGTCACACTACGACAC
TATCACCAAGCATCGGTTTTGAACCAACATCATAACACCAAATCGagaga
gaaaagtttttttcaccaAACTTTGACCCAAGGATTTCGGTTACTGTTTG
CATGGAGGCATTGATGGTCTCCTGGATGACGGTGCCTAGAATCaagaaac
aataacaaacatgAAATTCATATTGAACTAATGCAGAATATTCACACAAA
ATACAAcatttataaaagaaatattcCTGTTAATTAGTTTTAAAACGGTC
TTCAAACATCTATCTATAACTTTTTATATTGCCATGGAATACCTTTTATC
TATTATCAATCTATTGTCCTTTTAGAAAATCAACTCGTACCTGACACAAA
CGCTTTGATAGCAACGTTCACAATTAAATGGGATCAAATTGATTTGTCGA
CAGTTGGGTGAAGAACACTTATTCTTCTTtcgttttttgaaaacattatc
CTTGCATCCACTTTGTATATGTCGTTCAACCTGAAGGGaatgataggaat
ggaa Run BLAST on NCBI protein sequence of TCONS_00073830-protein >TCONS_00073830-protein ID=TCONS_00073830-protein|Name=TCONS_00073830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MYLSLFLGLLFAVTTPCSSHLTKHYMSHKELENHLQSLTSMFPDISRVYS
IGESVKGRSLLVMEISSNPGEHEFLEPEFKYVGNMHGDETVGRQILLNLI
ELLLWNYTSNPAIKQLVDTTRIHILCTMNPDGFNKAQKTQNDYLPDGRNN
ANNVDLNRNFPDPFVPSYFSKVRMQKETKAVIDWLHSLPFVLSANLHGGA
VVVNYPYDNFKEFQRYLFFGRSIYAGTPDDDVFKSISKTYSKSHHNMSKG
KHCGEDKFVDGITNGAEWYTVSGGMQDYNYRYTNCFEILIELSCTKLVPE
KDLLMYWEHNRKALLSYLARIHMGVKGVVLTHDHEPIEGAKILIHDRTKE
IKTWRTGEYWRLLLPGNYQLEVSADGYFTQWKNITVTEGEVTRMDFNLFE
SASLRISPATSILFVHMIIAFLLA Run BLAST on NCBI transcript from alignment at scaffold_98:222093..227512- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073830 ID=TCONS_00073830|Name=TCONS_00073830|organism=Clytia hemisphaerica|type=transcript|length=5420bp|location=Sequence derived from alignment at scaffold_98:222093..227512- (Clytia hemisphaerica)
AAAGGATGCAAGAAGAGTTGGATTTGGACTAGTAATGAAGCAGGCTGCAT
TGTGGATGAGTTTGCCCACAATGCAGTCACGTTAAGAATTTGGAATGATA
ATTTGTATCAAGCAATATTATGTGATTATTGTCGTTATATTGTAGCAAAG
AAATGTTTTTTGAAGCAAACACTGAAAGTACCCACATTCATGTGTGTGTG
ACATATGTGAAAAATGCTGTTTTTAAGCGTATATGCAATAAGTTACGCTA
CATTTTGTGAGAGTCACTGAGTTTCGGATGAGAAATATTCAGACCTTTAT
GTCATGTTTGAAAGTTTTGAATGCAAATCTCATATCAAAATATCGCTCTT
CAAAATTAATAAAAACGGGGAAGGATAAAAAAGGGAAATACTATATAAAT
AGTTATTTTGTGATAACGTATGCTTGGTCTTTTTATTAGGTTTTAGTGTC
AAGGCCAATACTATTCTAAGTTATTAGTTGTCTGTTCACGCAGAACATGT
GCTATCGCTACAGTTGTTTAAGGAAGAAAGTGTACAGTGACAGTATTTTT
ACTATCGTTCATCGCGCTTGCGCAGTATAAAACTAAAAGAGCGTGCCCGG
TACGGAGAAAGAAGAATTGGCAGTAAGAAAAACAAATTTGAAAAGCGTCA
AGTGAATTATTCACAAGGATAGTGTTGAAGAATTTATAAACAACACATTT
CTGCTAATACATGCGTAAATGGTTTCATTTTCGCGAAAAATTTGCTATAA
GAAGAATTGAGTTTGTGAAATTGAGTTCATATTGAACACGCTTTTGGTGA
GTGAACTGTTAAAAACATCGTGAAGATGTATCTATCTTTATTTCTTGGAT
TGCTGTTTGCAGTCACCACGCCTTGTTCAAGTCACCTTACAAAGCATTAC
ATGTCTCATAAAGAACTTGAAAATCATCTGCAGAGCTTGACATCAATGTT
TCCCGATATTTCCCGAGTATACAGTATCGGGGAGAGCGTAAAAGGAAGAA
GTTTACTTGTTATGGAAATTTCATCGAACCCTGGCGAACACGAGTTTCTG
GAACCAGAATTCAAATATGTTGGTAACATGCACGGAGATGAGACAGTGGG
TCGGCAAATTCTTTTGAACTTAATTGAACTGTTGTTGTGGAACTATACTT
CCAACCCTGCGATCAAACAACTGGTTGATACAACAAGGATACACATTCTC
TGCACCATGAATCCTGATGGTTTCAACAAAGCACAAAAAACACAAAACGA
TTATTTACCAGATGGCCGGAACAATGCAAATAATGTCGATTTGAACAGAA
ACTTCCCAGACCCTTTTGTGCCATCATATTTCAGTAAGGTTCGAATGCAA
AAAGAAACAAAGGCAGTTATAGACTGGCTGCATTCACTCCCATTCGTTCT
CTCCGCTAACTTGCACGGTGGAGCAGTCGTGGTAAACTATCCTTATGATA
ACTTCAAAGAGTTTCAGCGTTATTTATTTTTCGGTCGTTCGATTTATGCC
GGGACTCCAGATGATGACGTTTTCAAGTAAGTTTGAATCTCTTATCCCAC
GAAATTTTTAAAAGAAAAATGATGTTTTATTGTCTATGTATGAAACACTA
CCCCTCGCACCACACAATGTTGCAAAATGGCTACAATGGAACTGACTGTA
AATTTCTTTGTTTCTCCTGCTTCTTTGAGCTTTAAGAATATAGAATCTTT
TAAGTTTTAAAGTCTCACTTGCTAAAAACATTTAGACCAAATTTATCTCA
GTGAAAAGGGTTCAGGGACGCTTACTTTCAAATTTGACATTTCTTTATCC
AACAGACCTCTTATTTTTTCACGATAGATCGATTTCGAAGACGTATTCAA
AGAGTCATCATAACATGAGTAAAGGGAAACATTGCGGAGAAGACAAGTTT
GTTGATGGAATCACTAATGGTGCAGAATGGTAAGTCTTTGGTATTTTGAA
TGATCTTTCTTTGAGCGAGACGTGGCAGTGAACTACAAATTCCATTCTCG
TTTTTGAAAAAAAAAACGAAATGGTCATTTCAATTTTTTTTGTCATCTAA
GTCTTAGACCGAGTAGACTTCTGTTTTACATTGAAAATTTTTATGAGCCA
CCTCTAGTGGAGTCCCTGATCACTTAACTGAGTTTACTTATCTTTCATTT
CAATCAGATAGATAAAGAAAAGAAGTGTAAAAATTATTTGCTTTGCCTTC
ATTATAGGTACACAGTGAGTGGAGGGATGCAAGATTACAATTATCGATAC
ACCAACTGTTTTGAAATCCTGATCGAGCTAAGCTGTACAAAATTGGTCCC
TGAAAAAGACCTTCTTATGTATTGGGAACACAATCGAAAAGCACTGTTGA
GTTATCTCGCTCGTATTCACATGGGAGTCAAAGGTATGCAAAAAAAATTT
CGAACTGCTATTTCGATTTTCAGCAGATCTGTATTATGTATGCAATAGGC
ATTTCCAAAATTTGGAAATATTTTGAAAATATGATATTTCAGATTTGGAA
ATATCATGAAATATGATATTTCNGTTTCGAACTGCTATTTCTATTTTCAG
CAGATCTGTATTATGTATGCAATAGGCATTTCCAAAATTTGGAAATATTT
TGAAAATATGATATTTCAGATTTGGAAATATTAATACAATAATGACCGGT
TAGTGAGGGCTGTACTGAGAAATATTGCCCGAGGTCAAGTAACGACCGAG
CTTGCGAGGTTGTTGCGTTGACCGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATGTCAACGCATTGTTCATTTTCCTTTGAAAAAGTGACGTCACAAT
GAATTTTCCTAACGACGGGCAACTCTGGACAATGTAGGCCCGTCGTCATG
CGAAATGGACCAATTGCAGTGCGCAAAAAGCCATGTAGCCCGCTTCGAAA
AAGTAACCGGTTAACAACATGAAATATGACATTTCCTCAACTTTGGAAAT
ATAGAAAAGTTATACTTCGATATTTACACATGTATATGGAAATATCATAT
TTTCAAGATATTTCCAGGATTGGAAATCTTTTATTTCGCCTAGTGTTATT
TTGAGTGCGATGAATGCCTTGTTTTGCTGGAACCATTACCAATGTTACTA
AATCCCTTGGGTCATATTAATAGTGTAAACTTCTTATGAACCCTTGGGAA
TCAATCACCATAGCAATATTTTGAAAACGAGGTAAGTGATTCTCGTGAGG
CAATTTATAAAAAGGTCCTATTATTTGTGATTTTTTGACTTCTTTGTGAG
CTTAAAGTATTATATAGAGAAAATAAAACCTATTCCCGGTTCCTTCCTTC
ACCTTTTGTGATAGCGCTCATAAATATGGTAATACTAAATTAATACGAGC
AGCTCTTTTCGAGTTTGGAAGGAAATCATTATTGAGGATAAAATCATTTC
CTCGTGAATTTCAACATCCGACTCTATTTTGATGAATTATTCGTAGAATA
TTTGATAGAGAATTTCATTTCCGTTTCTCACTTTCATGTTTATCAAATTA
ATTTTTAATTATTTTTCAAGGGGTTGTTCTGACACATGACCATGAACCAA
TCGAAGGTGCAAAGATTCTAATCCACGATCGAACAAAAGAAATCAAAACA
TGGAGAACTGGGGAATATTGGCGATTATTGTTGCCTGGAAACTATCAGCT
CGAAGTTTCGGCTGACGGTTATTTTACTCAATGGAAAAATATCACTGTTA
CAGAAGGAGAAGTGACGAGAATGGATTTTAATTTATTTGAGAGTGCATCG
TTGAGAATTTCACCTGCAACGAGCATTCTTTTTGTACATATGATTATTGC
ATTCCTGCTAGCTTGACCTCTATATTCAACTTTTTATACCTCAATGTAAA
TAGCTATCAAATCTCTTAATTTTATCATAAATAATTTATTTCGTTTTTAA
TATACCGACGCAATACACCGAACTTAAAAAAAAAGCTTTCTCGTTTGCTG
TAACATAAAATTTTAAACATTGACGTCATTGCGTTTAAAACGTTTGTTTC
GTTTGTTTGTGACGTCATAACTAGTAGCATGCTGTTGGAAACGAAACAAA
AACAATGAAAAAGAAATACTTCTAACTTTTAAGATTTAAACTTGTTAACT
TCCTGTTGATAAAATATATTTGTTCCTTTTGCCCTATTTACTCAAAAGCG
AGCAAAAAATACTTTAAAATTTACAATTTATAAATACCTTCGTGTTTTGG
AAAAAGTTATTTTTGTTTTCTTTCTGCAAATAGTTTACAGACGATCACGT
TGTTTATCAACATTCGATTAGGGATCAATAGAACGCCCCTCCCCTTACCC
CTCATTCTGAATAATGGCCAATTATCAGGTTGTCTCTGCTAAGATAGATA
GTTACGGTTGAGCCAAAGGCGAAAAAAATTTGTTACCTTTCACAAGGCAA
ATATATTGAATAAAAATCGAGATTTACAATATATTTAGTGAAGTATTTAT
AGCATAATCCGTAAAAAATTGACCTATTTTATTCAAAAAACAATATATAA
TTGATTACATTATAGGATTGTTTAAAACAGCATTCTGGTCAGCATATTAT
ACGTGATTTCTTGACACCCATACAATTTAGTTTGCAATAAGCAGAAGACA
TGCAATGAAAAGGCAGGTGTTGGTAATGAGTCTCTCTTCATTTGAAATCA
AGGTTTCCATAGCCTCCTCTTTTCGTTGAAAGTGAAACACTTTCGAGGAC
TGTCACACTACGACACTATCACCAAGCATCGGTTTTGAACCAACATCATA
ACACCAAATCGAGAGAGAAAAGTTTTTTTCACCAAACTTTGACCCAAGGA
TTTCGGTTACTGTTTGCATGGAGGCATTGATGGTCTCCTGGATGACGGTG
CCTAGAATCAAGAAACAATAACAAACATGAAATTCATATTGAACTAATGC
AGAATATTCACACAAAATACAACATTTATAAAAGAAATATTCCTGTTAAT
TAGTTTTAAAACGGTCTTCAAACATCTATCTATAACTTTTTATATTGCCA
TGGAATACCTTTTATCTATTATCAATCTATTGTCCTTTTAGAAAATCAAC
TCGTACCTGACACAAACGCTTTGATAGCAACGTTCACAATTAAATGGGAT
CAAATTGATTTGTCGACAGTTGGGTGAAGAACACTTATTCTTCTTTCGTT
TTTTGAAAACATTATCCTTGCATCCACTTTGTATATGTCGTTCAACCTGA
AGGGAATGATAGGAATGGAA Coding sequence (CDS) from alignment at scaffold_98:222093..227512- >TCONS_00073830 ID=TCONS_00073830|Name=TCONS_00073830|organism=Clytia hemisphaerica|type=CDS|length=5100bp|location=Sequence derived from alignment at scaffold_98:222093..227512- (Clytia hemisphaerica)
GGGTTGTTCTGACACATGACCATGAACCAATCGAAGGTGCAAAGATTCTA
ATCCACGATCGAACAAAAGAAATCAAAACATGGAGAACTGGGGAATATTG
GCGATTATTGTTGCCTGGAAACTATCAGCTCGAAGTTTCGGCTGACGGTT
ATTTTACTCAATGGAAAAATATCACTGTTACAGAAGGAGAAGTGACGAGA
ATGGATTTTAATTTATTTGAGAGTGCATCGTTGAGAATTTCACCTGCAAC
GAGCATTCTTTTTGTACATATGATTATTGCATTCCTGCTAGCTTGAGTAC
ACAGTGAGTGGAGGGATGCAAGATTACAATTATCGATACACCAACTGTTT
TGAAATCCTGATCGAGCTAAGCTGTACAAAATTGGTCCCTGAAAAAGACC
TTCTTATGTATTGGGAACACAATCGAAAAGCACTGTTGAGTTATCTCGCT
CGTATTCACATGGGAGTCAAAGATCGATTTCGAAGACGTATTCAAAGAGT
CATCATAACATGAGTAAAGGGAAACATTGCGGAGAAGACAAGTTTGTTGA
TGGAATCACTAATGGTGCAGAATGATGTATCTATCTTTATTTCTTGGATT
GCTGTTTGCAGTCACCACGCCTTGTTCAAGTCACCTTACAAAGCATTACA
TGTCTCATAAAGAACTTGAAAATCATCTGCAGAGCTTGACATCAATGTTT
CCCGATATTTCCCGAGTATACAGTATCGGGGAGAGCGTAAAAGGAAGAAG
TTTACTTGTTATGGAAATTTCATCGAACCCTGGCGAACACGAGTTTCTGG
AACCAGAATTCAAATATGTTGGTAACATGCACGGAGATGAGACAGTGGGT
CGGCAAATTCTTTTGAACTTAATTGAACTGTTGTTGTGGAACTATACTTC
CAACCCTGCGATCAAACAACTGGTTGATACAACAAGGATACACATTCTCT
GCACCATGAATCCTGATGGTTTCAACAAAGCACAAAAAACACAAAACGAT
TATTTACCAGATGGCCGGAACAATGCAAATAATGTCGATTTGAACAGAAA
CTTCCCAGACCCTTTTGTGCCATCATATTTCAGTAAGGTTCGAATGCAAA
AAGAAACAAAGGCAGTTATAGACTGGCTGCATTCACTCCCATTCGTTCTC
TCCGCTAACTTGCACGGTGGAGCAGTCGTGGTAAACTATCCTTATGATAA
CTTCAAAGAGTTTCAGCGTTATTTATTTTTCGGTCGTTCGATTTATGCCG
GGACTCCAGATGATGACGTTTTCAAGGGTTGTTCTGACACATGACCATGA
ACCAATCGAAGGTGCAAAGATTCTAATCCACGATCGAACAAAAGAAATCA
AAACATGGAGAACTGGGGAATATTGGCGATTATTGTTGCCTGGAAACTAT
CAGCTCGAAGTTTCGGCTGACGGTTATTTTACTCAATGGAAAAATATCAC
TGTTACAGAAGGAGAAGTGACGAGAATGGATTTTAATTTATTTGAGAGTG
CATCGTTGAGAATTTCACCTGCAACGAGCATTCTTTTTGTACATATGATT
ATTGCATTCCTGCTAGCTTGAGTACACAGTGAGTGGAGGGATGCAAGATT
ACAATTATCGATACACCAACTGTTTTGAAATCCTGATCGAGCTAAGCTGT
ACAAAATTGGTCCCTGAAAAAGACCTTCTTATGTATTGGGAACACAATCG
AAAAGCACTGTTGAGTTATCTCGCTCGTATTCACATGGGAGTCAAAGATC
GATTTCGAAGACGTATTCAAAGAGTCATCATAACATGAGTAAAGGGAAAC
ATTGCGGAGAAGACAAGTTTGTTGATGGAATCACTAATGGTGCAGAATGA
TGTATCTATCTTTATTTCTTGGATTGCTGTTTGCAGTCACCACGCCTTGT
TCAAGTCACCTTACAAAGCATTACATGTCTCATAAAGAACTTGAAAATCA
TCTGCAGAGCTTGACATCAATGTTTCCCGATATTTCCCGAGTATACAGTA
TCGGGGAGAGCGTAAAAGGAAGAAGTTTACTTGTTATGGAAATTTCATCG
AACCCTGGCGAACACGAGTTTCTGGAACCAGAATTCAAATATGTTGGTAA
CATGCACGGAGATGAGACAGTGGGTCGGCAAATTCTTTTGAACTTAATTG
AACTGTTGTTGTGGAACTATACTTCCAACCCTGCGATCAAACAACTGGTT
GATACAACAAGGATACACATTCTCTGCACCATGAATCCTGATGGTTTCAA
CAAAGCACAAAAAACACAAAACGATTATTTACCAGATGGCCGGAACAATG
CAAATAATGTCGATTTGAACAGAAACTTCCCAGACCCTTTTGTGCCATCA
TATTTCAGTAAGGTTCGAATGCAAAAAGAAACAAAGGCAGTTATAGACTG
GCTGCATTCACTCCCATTCGTTCTCTCCGCTAACTTGCACGGTGGAGCAG
TCGTGGTAAACTATCCTTATGATAACTTCAAAGAGTTTCAGCGTTATTTA
TTTTTCGGTCGTTCGATTTATGCCGGGACTCCAGATGATGACGTTTTCAA
GGGTTGTTCTGACACATGACCATGAACCAATCGAAGGTGCAAAGATTCTA
ATCCACGATCGAACAAAAGAAATCAAAACATGGAGAACTGGGGAATATTG
GCGATTATTGTTGCCTGGAAACTATCAGCTCGAAGTTTCGGCTGACGGTT
ATTTTACTCAATGGAAAAATATCACTGTTACAGAAGGAGAAGTGACGAGA
ATGGATTTTAATTTATTTGAGAGTGCATCGTTGAGAATTTCACCTGCAAC
GAGCATTCTTTTTGTACATATGATTATTGCATTCCTGCTAGCTTGAGTAC
ACAGTGAGTGGAGGGATGCAAGATTACAATTATCGATACACCAACTGTTT
TGAAATCCTGATCGAGCTAAGCTGTACAAAATTGGTCCCTGAAAAAGACC
TTCTTATGTATTGGGAACACAATCGAAAAGCACTGTTGAGTTATCTCGCT
CGTATTCACATGGGAGTCAAAGATCGATTTCGAAGACGTATTCAAAGAGT
CATCATAACATGAGTAAAGGGAAACATTGCGGAGAAGACAAGTTTGTTGA
TGGAATCACTAATGGTGCAGAATGATGTATCTATCTTTATTTCTTGGATT
GCTGTTTGCAGTCACCACGCCTTGTTCAAGTCACCTTACAAAGCATTACA
TGTCTCATAAAGAACTTGAAAATCATCTGCAGAGCTTGACATCAATGTTT
CCCGATATTTCCCGAGTATACAGTATCGGGGAGAGCGTAAAAGGAAGAAG
TTTACTTGTTATGGAAATTTCATCGAACCCTGGCGAACACGAGTTTCTGG
AACCAGAATTCAAATATGTTGGTAACATGCACGGAGATGAGACAGTGGGT
CGGCAAATTCTTTTGAACTTAATTGAACTGTTGTTGTGGAACTATACTTC
CAACCCTGCGATCAAACAACTGGTTGATACAACAAGGATACACATTCTCT
GCACCATGAATCCTGATGGTTTCAACAAAGCACAAAAAACACAAAACGAT
TATTTACCAGATGGCCGGAACAATGCAAATAATGTCGATTTGAACAGAAA
CTTCCCAGACCCTTTTGTGCCATCATATTTCAGTAAGGTTCGAATGCAAA
AAGAAACAAAGGCAGTTATAGACTGGCTGCATTCACTCCCATTCGTTCTC
TCCGCTAACTTGCACGGTGGAGCAGTCGTGGTAAACTATCCTTATGATAA
CTTCAAAGAGTTTCAGCGTTATTTATTTTTCGGTCGTTCGATTTATGCCG
GGACTCCAGATGATGACGTTTTCAAGGGTTGTTCTGACACATGACCATGA
ACCAATCGAAGGTGCAAAGATTCTAATCCACGATCGAACAAAAGAAATCA
AAACATGGAGAACTGGGGAATATTGGCGATTATTGTTGCCTGGAAACTAT
CAGCTCGAAGTTTCGGCTGACGGTTATTTTACTCAATGGAAAAATATCAC
TGTTACAGAAGGAGAAGTGACGAGAATGGATTTTAATTTATTTGAGAGTG
CATCGTTGAGAATTTCACCTGCAACGAGCATTCTTTTTGTACATATGATT
ATTGCATTCCTGCTAGCTTGAGTACACAGTGAGTGGAGGGATGCAAGATT
ACAATTATCGATACACCAACTGTTTTGAAATCCTGATCGAGCTAAGCTGT
ACAAAATTGGTCCCTGAAAAAGACCTTCTTATGTATTGGGAACACAATCG
AAAAGCACTGTTGAGTTATCTCGCTCGTATTCACATGGGAGTCAAAGATC
GATTTCGAAGACGTATTCAAAGAGTCATCATAACATGAGTAAAGGGAAAC
ATTGCGGAGAAGACAAGTTTGTTGATGGAATCACTAATGGTGCAGAATGA
TGTATCTATCTTTATTTCTTGGATTGCTGTTTGCAGTCACCACGCCTTGT
TCAAGTCACCTTACAAAGCATTACATGTCTCATAAAGAACTTGAAAATCA
TCTGCAGAGCTTGACATCAATGTTTCCCGATATTTCCCGAGTATACAGTA
TCGGGGAGAGCGTAAAAGGAAGAAGTTTACTTGTTATGGAAATTTCATCG
AACCCTGGCGAACACGAGTTTCTGGAACCAGAATTCAAATATGTTGGTAA
CATGCACGGAGATGAGACAGTGGGTCGGCAAATTCTTTTGAACTTAATTG
AACTGTTGTTGTGGAACTATACTTCCAACCCTGCGATCAAACAACTGGTT
GATACAACAAGGATACACATTCTCTGCACCATGAATCCTGATGGTTTCAA
CAAAGCACAAAAAACACAAAACGATTATTTACCAGATGGCCGGAACAATG
CAAATAATGTCGATTTGAACAGAAACTTCCCAGACCCTTTTGTGCCATCA
TATTTCAGTAAGGTTCGAATGCAAAAAGAAACAAAGGCAGTTATAGACTG
GCTGCATTCACTCCCATTCGTTCTCTCCGCTAACTTGCACGGTGGAGCAG
TCGTGGTAAACTATCCTTATGATAACTTCAAAGAGTTTCAGCGTTATTTA
TTTTTCGGTCGTTCGATTTATGCCGGGACTCCAGATGATGACGTTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073830-exon-scaffold_98-1575043694:225987..227512 | TCONS_00073830-exon-scaffold_98-1575043694:225987..227512 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1575043694:225584..225685 | TCONS_00073830-exon-scaffold_98-1575043694:225584..225685 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1575043694:225130..225305 | TCONS_00073830-exon-scaffold_98-1575043694:225130..225305 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1575043694:222093..223792 | TCONS_00073830-exon-scaffold_98-1575043694:222093..223792 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1510915933:225987..227512 | TCONS_00073830-exon-scaffold_98-1510915933:225987..227512 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1510915933:225584..225685 | TCONS_00073830-exon-scaffold_98-1510915933:225584..225685 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1510915933:225130..225305 | TCONS_00073830-exon-scaffold_98-1510915933:225130..225305 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1510915933:222093..223792 | TCONS_00073830-exon-scaffold_98-1510915933:222093..223792 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1491911889:225987..227512 | TCONS_00073830-exon-scaffold_98-1491911889:225987..227512 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1491911889:225584..225685 | TCONS_00073830-exon-scaffold_98-1491911889:225584..225685 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1491911889:225130..225305 | TCONS_00073830-exon-scaffold_98-1491911889:225130..225305 | Clytia hemisphaerica | exon |
| TCONS_00073830-exon-scaffold_98-1491911889:222093..223792 | TCONS_00073830-exon-scaffold_98-1491911889:222093..223792 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:222093..227512 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000834 | Peptidase_M14 |
| IPR008969 | CarboxyPept-like_regulatory |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0004181 | metallocarboxypeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004181 |
metallocarboxypeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00073830 vs. Swiss-Prot (Human)
Match: CBPD (Carboxypeptidase D OS=Homo sapiens GN=CPD PE=1 SV=2) HSP 1 Score: 317.39 bits (812), Expect = 9.719e-90 Identity = 181/385 (47.01%), Postives = 255/385 (66.23%), Query Frame = 1
Query: 895 HYMSHKELENHLQSLTSMFPDISRVYSIGESVKGRSLLVMEISSNPGEHEFLEPEFKYVGNMHGDETVGRQXXXXXXXXXXWNYTSNPAIKQLVDTTRIHILCTMNPDGFNKAQKTQNDYLPDGRXXXXXXXXXXXFPDPFVPSYFSKVRMQKETKAVIDWLHSLPFVLSANLHGGAVVVNYPYDNFKEFQRYLFFGRSIYAGTPDDDVFKSISKTYSKSHHNMSKGKHCG----EDKFVDGITNGAEWYTVSGGMQDYNYRYTNCFEILIELSCTKLVPEKDLLMYWEHNRKALLSYLARIHMGVKGVVL-THDHEPIEGAKILIHDRTKEIKTWRTGEYWRLLLPGNYQLEVSADGYFTQWKNITVTEGEVTRMDFNLFESAS 2034
H+ ++E L+ + +P+I+R+YS+G+SV+ R L VMEIS NPG HE EPEFKY+GNMHG+E VGR++LLNLIE L N+ ++P + LV TRIH++ +MNPDG+ K+Q+ + + GRNN+NN DLNRNFPD FV Q ET AV+ W+ S PFVLSANLHGG++VVNYP+D+ ++ G + Y+ +PDD VF+ I+ +YSK + M +G+ C + F GITNGA WY V GGMQD+NY TNCFE+ IEL C K EK+L +WE NR++L+ ++ ++H GV+G VL D I A I + + + T++TG+YWRLL+PG Y++ SA GY KN+TV +++F L S++
Sbjct: 502 HHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISV-IGRNNSNNFDLNRNFPDQFVQITDP---TQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDDEQ-------GLATYSKSPDDAVFQQIALSYSKENSQMFQGRPCKNMYPNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVAEINHPVTTYKTGDYWRLLVPGTYKITASARGYNPVTKNVTVKSEGAIQVNFTLVRSST 875 HSP 2 Score: 249.98 bits (637), Expect = 1.216e-67 Identity = 165/430 (38.37%), Postives = 241/430 (56.05%), Query Frame = 1
Query: 898 YMSHKELENHL-QSLTSMFPDISRVYSIGESVKGRSLLVMEISSNPGE-----------------HEFL--EPEFKYVGNMHGDETVGRQXXXXXXXXXXWNYT-SNPAIKQLVDTTRIHILCTMNPDGFNKAQKTQ---NDYLPDG---RXXXXXXXXXXXFPDPFVPSYFSKVRMQKETKAVIDWLHSLPFVLSANLHGGAVVVNYPYDNFKEFQRYLFFGRSIYAGTPDDDVFKSISKTYSKSHHNMSKGK-HCGEDK---FVDGITNGAEWYTVSGGMQDYNYRYTNCFEILIELSCTKLVPEKDLLMYWEHNRKALLSYLARIHMGVKGVVL-THDHEPIEGAKILIHDRTKEIKTWRTGEYWRLLLPGNYQLEVSADGYFT-QWKNITVTEGEVTRMDFNLFESASLRISPATSILFVHMIIAF 2088
Y +ELE+ L ++ + P ++R++SIG SV+GR L V+ +++ G L P+ K VGNMHGDETV RQ+L+ L L Y +P + +L++TT +++L ++NPDGF +A++ D P G R+N+ DLNR+FPD F + E +A+I+W+ FVLS NLHGG+VV +YP+D+ E + IY+ T DD+VFK ++K Y+ +H M G+ HC D+ F DGITNGA WY V GGMQDYNY + NCFEI +ELSC K P L WE+NR++L++ + ++H+GVKG V + +E A I + I T R G+++RLL+PG Y L V GY N+ V EG T +DF+L + + I T + +A
Sbjct: 58 YYHEEELESALREAAAAGLPGLARLFSIGRSVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFPDQFSTGEPPALDEVPEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDSPEHK-----ATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEPHCPGDEDETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRPTVTSVIPDTTEAVSTASTVAI 482 HSP 3 Score: 167.162 bits (422), Expect = 1.040e-41 Identity = 120/367 (32.70%), Postives = 187/367 (50.95%), Query Frame = 1
Query: 898 YMSHKELENHLQSLTSMFPDISRVYSIGESVKGRSLLVMEISSNPGEHEFLEPEFKYVGNMHGDETVGRQXXXXXXXXXXWNYTSNPAIKQLVDTTRIHILCTMNPDGFNKAQKTQNDYLPDGRXXXXXXXXXXXFPDPFVPSYFSKVRMQKETKAVIDWL-HSLPFVLSANLHGGAVVVNYPYDNFKEFQRYLFFGRSIYAGTPDDDVFKSISKTYSKSHHNMSKGK-HC---GEDKFVDGITNGAEWYTVSGGMQDYNYRYTNCFEILIELSCTKLVPEKDLLMYWEHNRKALLSYLARIHMGVKGVVLTHDHEPIEGAKILIHDRTKEIKTWRTGEYWRLLLPGNYQLEVSADGYFTQWKNITV 1983
Y S+K+L L+ L +P I+ + ++G+S + R + +EIS+ P E EP+ ++V +HG+ VG ++LL L E L NY NPA+ QLVD TRI I+ ++NPDG +AQ+ D + + D + F+ Q ETKA+I+ L F LS L GG+++V YPYD K Q + + K ++ Y+ +H +M G+ C ++ G+ GAEW++ G M+DY+ Y +C EI + SC L W N+++LLS L +H GV G V +PI A I++++ K ++T G + LL PG + + ADGY Q + V
Sbjct: 933 YHSYKDLSEFLRGLVMNYPHITNLTNLGQSTEYRHIWSLEISNKPNVSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCLNYKKNPAVTQLVDRTRIVIVPSLNPDGRERAQEK------DCTSKIGQTNARGKDLD----TDFTNNASQPETKAIIENLIQKQDFSLSVALDGGSMLVTYPYD--KPVQT-----------VENKETLKHLASLYANNHPSMHMGQPSCPNKSDENIPGGVMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKTGKPISKAVIVLNEGIK-VQTKEGGYFHVLLAPGVHNIIAIADGYQQQHSQVFV 1275
The following BLAST results are available for this feature:
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