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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=transcript|length=2308bp
AGAAAGTTCAGTAGTGATGACATCATGGAACAAGTCATCAAGCTTAAGTT
TTGCGGTTGACAGTCGAGGTTCAATGAATGTTTTCTGTCTTAATGTTGTT
CTGTATCTCCCCCGTAGAAGTTTctcaataaaaaacaacaagaagccTGC
AGTGGACACACAGTGAAGAAGATTAGATTTTCAAGCCAAAATATTGTGTA
TAAATACAAGGAGAAGTGAATTTGGAAATCATTATTTTGACACGAGCGTG
GAAAAGAACCGTTATCTGAAGCTTACAACTTATTCAAAAATAATGATGGA
AATTCTCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTC
TCGGTGATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAA
TTGGAATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGAC
CTGGGATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACC
AGTTGAGAGACATCATGGTTGTCAATTTACAGCACGTGACCAAAGGGAAA
TGGGACGAGTTAAAGAAAACCTGTCTGCGTCTTTTCAATTCATCAAGTCT
TCCAAGtgattcaaaaactttcaatcCCATCTTCTACCGGAATGACAACA
CTATCTTGAAAGGACTCATTACTGGTGCAACTCCTCCCGATGATGGTAAA
TGTCAATCCCTTTCCTGGGTGCAACTCTCACTCCATGTCACTCAGCCCTC
AAACGGTCGCCGCCCACGCCTCATAAAGAGAAGCTTAGCGCATAACCTAT
TTGCTATCCTCACCGGAAAGAAAACCTATCGAAAAATCAGTAACAGAGGA
CGACCAAAGAAGTTCTACCTCAAGAAAGTCTTGTTTCTGAACTCCGACAT
TGCACAAAGCGCTGACGTCCAAAGTAAAACCTATTATTGCCTTCGTTATG
TTTATTTCAAAGTGATGGAGAGGAGACGAACGCGCGCTATCCTATCAGGT
AATATCGGTTCATTTGACACTGTTCTCAATTACCCAAGGAGAAGAAGTCT
CTTCAAGCAATGTGAGCCTGGGAAATCGAGCCCCAATCAAATCTGCATCA
GTAATCGAGGCAGGAGAGACACTTTTCAATACAGACTTTCGACCAGAATT
CAAGCAGGAACAAATAAAGCTCCCTATTTTGTCGCTTTCACTATTTGAAT
TTAGAAATATATATTAGATTAGAAGatgtaaaaatgaaattaaccttaaa
attttaattaacattattgaaaaaaaatacataaaccctatttaaatatt
tatttaattAGAAGTTATTGTTCGTCCAATATATTTTACATTATATGAGT
CGCAAAGGGGTAAGATTTTTCAATACGTCCTGCAATTAACAAGCAACTGT
GTCCTGTGATGTTAGGATATTCTATTCCAGTTTTGATTTTGAGCGTTTAT
TTTACACCCAATTAAACTTTCCAATCCATAACCCCACGGTAATATGACTG
TTCAGAGTTTTTAAGTTGAATTATTTTCGCGATATCTCATCATAGCCGCA
AACACAGGCCTTGTATTCGAAATCCccttaatgacgtcatcagtgagAAC
AGCTGAAACCAATCCATGAAATCGATTTTTCATGACGTAATCACTCATCG
TTTCACTGGATCTgtcttctttgtttgtttttgtcatGGCGGGAAAAGTG
AGGATGGAGTGGGCCATTGTATTTTTAATCCAATAAAATTGCTCATTGAT
CAATTGATAAGCCAATGAGTTGTCTTCTTTTCCTAAATCGACCAATAAGA
TTAAAGGAAATCTGCGTCTTTTCATTACTTTGTTTCTTAGATTTGAAAGA
AGCGATCTGAATTCCTCTCTCAGCATTCCTTCGTCATCGTCATTATGTAT
TTTCATAACCGCCACGTAAAATGTGGACCAACGGTACGGCGATTTGACGT
CACGTCGACTACGTCGTCGGTTTTGCGGAAGAAGTAAGGAAAGGATACCG
AATAATTTTTCGACGTCGTTTTCTTTAGGTTGATCTGCTCCTGAGAATCT
CAACATTGGAAATCCTCGTACTCGGTGGGCGAACTGCACTCTAGCCCACG
TGCAGGTACTAGACTGCTTAAGCGCAACATCATAATTACTAGCCTTGAAG
CTCCCATGATCTTTGATGAGAATTCTTCGACTATGTTTGAAGAGGATGAC
ATTTTGGAGATTGTTATCTGAATCCTCGCCGATGATAGAGTGCTGGTGTA
AACACACTTTTAGATTTCTCCGTTGTTCTTCGCTCGTGCTTTGTAGGCCA
GCAAACTa Run BLAST on NCBI protein sequence of TCONS_00073827-protein >TCONS_00073827-protein ID=TCONS_00073827-protein|Name=TCONS_00073827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MMEILTRFICLLLVSMYVVLGDPSCDGRSCTVRELELELNERREDENLFQ
VMTWDVRNEETKKICDVIDQLRDIMVVNLQHVTKGKWDELKKTCLRLFNS
SSLPSDSKTFNPIFYRNDNTILKGLITGATPPDDGKCQSLSWVQLSLHVT
QPSNGRRPRLIKRSLAHNLFAILTGKKTYRKISNRGRPKKFYLKKVLFLN
SDIAQSADVQSKTYYCLRYVYFKVMERRRTRAILSGNIGSFDTVLNYPRR
RSLFKQCEPGKSSPNQICISNRGRRDTFQYRLSTRIQAGTNKAPYFVAFT
I Run BLAST on NCBI transcript from alignment at scaffold_98:181489..186519- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=transcript|length=5031bp|location=Sequence derived from alignment at scaffold_98:181489..186519- (Clytia hemisphaerica)
AGAAAGTTCAGTAGTGATGACATCATGGAACAAGTCATCAAGCTTAAGTT
TTGCGGTTGACAGTCGAGGTTCAATGAATGTTTTCTGTCTTAATGTTGTT
CTGTATCTCCCCCGTAGAAGTTTCTCAATAAAAAACAACAAGAAGCCTGC
AGTGGACACACAGTGAAGAAGATTAGATTTTCAAGCCAAAATATTGTGTA
TAAATACAAGGAGAAGTGAATTTGGAAATCATTATTTTGACACGAGCGTG
GAAAAGAACCGTTATCTGAAGCTTACAACTTATTCAAAAATAATGATGGA
AATTCTCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTC
TCGGTGATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAA
TTGGAATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGAC
CTGGGATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACC
AGTTGAGAGACATCATGGTAAGAAACGTTGTCTTTTCGTTCAAATTAGGG
ATGAGCTGGAGTTTTTACAAGATGCTTAGCTGATTGGTTATTTTTAAACA
ATAGGGATGACGCGTTCTTTAGAAAAAGTAATAAAATCGTTTGTCTCAAC
ATTTAACGACCAACAGAGTCATCAAAGAACTTGTAAAAACTCCAGCTTGA
CCCTCAAATTAACTTGTCTTTTGTCGGCTAATGCTTTGTAACAACAATCC
TTCGAGAACTTCGAAAATTCGACTCATTTGACTACAGTCAACTCTCTCTA
ATCTTGCAATTCGAATCTTTCTGTATAATTCGAACTAAAGTGTTTATTTC
TTCAGTTGGAAGTTACTCCCTGTAAATCGAATCTTTCTTCAATTCGCAAT
TCGAAAGAACATTTTTGTCCCTTGCCACCAATTAACAAAATTATGCGTGT
AGCAACTTATGAGCCAAAACTGTGTACTTTAGGCGTACAAATTTGATATT
TATTACGATTTCGAGGTGTTATAGATTTCCAACTTTTTTGAGAATTTTTC
GCGAGCACAAACTGTCACGAATTGCCCTGTTTAGAATCTTCAAAAACATT
TACTTTCGCGAAATAGGCCAAAATTCGCGAAAATCGCGAAAGTTTCTGCT
CGCGAGAGTTTGTACGCCTAAAGTATTTATCATGGATGTAAGTTAGGATG
GTGACCGGTGAATCGTGAATTGAATATTAACCAGGAAATCGTATATTTCT
CGCCTGGCTAAGAAATAAACTTCCTAAATCTGTGTATTATTTTTCCCATT
TTGATCCGTTTTGTTGATATTTCAACCTCAAAGATTTGCGAGTAATCTGT
GGCAGATGCAGATCAAGAGAAAAAAGCGTGGGAACTTCATGTTGAGTGAC
ATTTCCGTCTTACGAATGTCGGAAGCTTTTCATCAAATTCTCCTTCATAT
TGCTGAAGAGCTGTCTCTTATCAGGCACCACGTGTCTATGGATGATCTAA
CTTTAGGTGTACAGCAGAAACTTTCGCGATCATAAGTTTAAGACAAAAGA
CAGTTTAAGACAAAAGTTTCAACAATCAAATTTTATTTGTCCCTGTAAAC
CGTTTTTCGTGTGAAATTTCTCATTTTAAAGTCTTGATTCGCGAAAGTTT
TATGCTCACGAAAAAGATTTTTTCGTCAAATTCGCATCGTATGCGTACGT
AAACTTCGCGATTTCTCGACCTAACGAAAGCTTTTGCTTGCTTTAACTTT
GGCCTATCTGCCCAACTTGCACACAACATTGTTTCAAAGTTTATCTAATT
CTCATAAAACCCATATAACTTCAAATTAACGTTATCTGGGTTTCAAGCGT
AGCGTAAATGGAAAATCCACTTTTCTCAAAATCTTTTATTCTTCATGGCA
CCACTTGTGAAAACATGTAGAGATTCAATGCACAGTTCGAAGTCTCATAA
ATTCTTAAAATAGACCTTAACTGGGCAGCTATTTATGGTAAATTCCACAA
CATATTTATCGTGTCCACAGAAAAGCTCTTTGACTTAACCCGTGTTTAAA
TCAAAAGCATACCTAACCTACCTATCTAAATTTAAAAAGTGTATTTGAAC
TTTAAAGTGTTATCGCGAGTCTAAAGCCGTTTTTGACATAGAAGGGCTTG
AGTGAAGTACACCCTAATACTGTTTGCGTCGCAACCACAGATATCTTATG
TATAAAGCACTAAATAGAGCTACACTGAATTTATCAAACAACGGCAGGTG
AAGCAAAATAATGCGCCAACTTTGCTAAAAGTAGGTCACAGTAGAAACCT
TGGATTTCACTATTGAAACTTTTTGACATTGCGATGACTTCAAAATTTCA
AGGATCTCGCATACTAAATTGTGACGTCACTTCTTTCAAGATGGCGAATT
ATTTTGATTCAAATAGGATACAAAAAGCTCTATCTAGTATTAGCAACACA
CGCTCTATCTAAAAGAGTGTGCTCAAAATATGAATTCAGAAATATAATCT
TTGTGGTTTTGCCCCGTGTATTCACAGTCGCTTCATTGTGGTTGCTTCAC
GATGACATTTTATGGTGCCATAAGCTTTTTAAACACAATAACATCTTTAT
ATAGACTATTGGCTCATGGATATTTCATAACTATTAATCTGTGGTCTTAA
AAAATGAAACCAAAATTATTTTTCTCTCTCTGCCAAATTTTAAGATACAG
TTTACCATTCTTCGTTTCTATCGCATATCGTTTTTTAAGGGTCTACGTAC
TCTTGTCTCCCGAATAGACGTCCCCCCCGCTAATTGTTAAGAGACAAAAA
AATCCATCCCCCCGCTCTTATTAAGACCCCCCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAAATGAAACCAAAATCATTTTTCT
CTCTCTGCCAAATTTTAAGATACAGTTTACCATTCTTCGTTTCTATCGCA
TATCGTTTTTTAAGGGTCTACGTATGAAGAAAACTTTTTCATGCACTGAA
AAATAATTCATTAAATTTTTCACCCTTTTCTTTTTTCCAGGTTGTCAATT
TACAGCACGTGACCAAAGGGAAATGGGACGAGTTAAAGAAAACCTGTCTG
CGTCTTTTCAATTCATCAAGTCTTCCAAGTGATTCAAAAACTTTCAATCC
CATCTTCTACCGGAATGACAACACTATCTTGAAAGGACTCATTACTGGTG
CAACTCCTCCCGATGATGGTAAATGTCAATCCCTTTCCTGGGTGCAACTC
TCACTCCATGTCACTCAGCCCTCAAACGGTCGCCGCCCACGCCTCATAAA
GAGAAGCTTAGCGCATAACCTATTTGCTATCCTCACCGGAAAGAAAACCT
ATCGAAAAATCAGTAACAGAGGACGACCAAAGAAGTTCTACCTCAAGAAA
GTCTTGTTTCTGAACTCCGACATTGCACAAAGCGCTGACGTCCAAAGTAA
AACCTATTATTGCCTTCGTTATGTTTATTTCAAAGTGATGGAGAGGAGAC
GAACGCGCGCTATCCTATCAGGTAATATCGGTTCATTTGACACTGTTCTC
AATTACCCAAGGAGAAGAAGTCTCTTCAAGCAATGTGAGCCTGGGAAATC
GAGCCCCAATCAAATCTGCATCAGTAATCGAGGCAGGAGAGACACTTTTC
AATACAGACTTTCGACCAGAATTCAAGCAGGAACAAATAAAGCTCCCTAT
TTTGTCGCTTTCACTATTTGAATTTAGAAATATATATTAGATTAGAAGAT
GTAAAAATGAAATTAACCTTAAAATTTTAATTAACATTATTGAAAAAAAA
TACATAAACCCTATTTAAATATTTATTTAATTAGAAGTTATTGTTCGTCC
AATATATTTTACATTATATGAGTCGCAAAGGGGTAAGATTTTTCAATACG
TCCTGCAATTAACAAGCAACTGTGTCCTGTGATGTTAGGATATTCTATTC
CAGTTTTGATTTTGAGCGTTTATTTTACACCCAATTAAACTTTCCAATCC
ATAACCCCACGGTAATATGACTGTTCAGAGTTTTTAAGTTGAATTATTTT
CGCGATATCTCATCATAGCCGCAAACACAGGCCTTGTATTCGAAATCCCC
TTAATGACGTCATCAGTGAGAACAGCTGAAACCAATCCATGAAATCGATT
TTTCATGACGTAATCACTCATCGTTTCACTGGATCTGTCTTCTTTGTTTG
TTTTTGTCATGGCGGGAAAAGTGAGGATGGAGTGGGCCATTGTATTTTTA
ATCCAATAAAATTGCTCATTGATCAATTGATAAGCCAATGAGTTGTCTTC
TTTTCCTAAATCGACCAATAAGATTAAAGGAAATCTGCGTCTTTTCATTA
CTTTGTTTCTTAGATTTGAAAGAAGCGATCTGAATTCCTCTCTCAGCATT
CCTTCGTCATCGTCATTATGTATTTTCATAACCGCCACGTAAAATGTGGA
CCAACGGTACGGCGATTTGACGTCACGTCGACTACGTCGTCGGTTTTGCG
GAAGAAGTAAGGAAAGGATACCGAATAATTTTTCGACGTCGTTTTCTTTA
GGTTGATCTGCTCCTGAGAATCTCAACATTGGAAATCCTCGTACTCGGTG
GGCGAACTGCACTCTAGCCCACGTGCAGGTACTAGACTGCTTAAGCGCAA
CATCATAATTACTAGCCTTGAAGCTCCCATGATCTTTGATGAGAATTCTT
CGACTATGTTTGAAGAGGATGACATTTTGGAGATTGTTATCTGAATCCTC
GCCGATGATAGAGTGCTGGTGTAAACACACTTTTAGATTTCTCCGTTGTT
CTTCGCTCGTGCTTTGTAGGCCAGCAAACTA Coding sequence (CDS) from alignment at scaffold_98:181489..186519- >TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_98:181489..186519- (Clytia hemisphaerica)
GTTGTCAATTTACAGCACGTGACCAAAGGGAAATGGGACGAGTTAAAGAA
AACCTGTCTGCGTCTTTTCAATTCATCAAGTCTTCCAAGTGATTCAAAAA
CTTTCAATCCCATCTTCTACCGGAATGACAACACTATCTTGAAAGGACTC
ATTACTGGTGCAACTCCTCCCGATGATGGTAAATGTCAATCCCTTTCCTG
GGTGCAACTCTCACTCCATGTCACTCAGCCCTCAAACGGTCGCCGCCCAC
GCCTCATAAAGAGAAGCTTAGCGCATAACCTATTTGCTATCCTCACCGGA
AAGAAAACCTATCGAAAAATCAGTAACAGAGGACGACCAAAGAAGTTCTA
CCTCAAGAAAGTCTTGTTTCTGAACTCCGACATTGCACAAAGCGCTGACG
TCCAAAGTAAAACCTATTATTGCCTTCGTTATGTTTATTTCAAAGTGATG
GAGAGGAGACGAACGCGCGCTATCCTATCAGGTAATATCGGTTCATTTGA
CACTGTTCTCAATTACCCAAGGAGAAGAAGTCTCTTCAAGCAATGTGAGC
CTGGGAAATCGAGCCCCAATCAAATCTGCATCAGTAATCGAGGCAGGAGA
GACACTTTTCAATACAGACTTTCGACCAGAATTCAAGCAGGAACAAATAA
AGCTCCCTATTTTGTCGCTTTCACTATTTGAATGATGGAAATTCTCACAA
GATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTCTCGGTGATCCG
TCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAATTGGAATTGAA
CGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGACCTGGGATGTGC
GGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACCAGTTGAGAGAC
ATCATGGTTGTCAATTTACAGCACGTGACCAAAGGGAAATGGGACGAGTT
AAAGAAAACCTGTCTGCGTCTTTTCAATTCATCAAGTCTTCCAAGTGATT
CAAAAACTTTCAATCCCATCTTCTACCGGAATGACAACACTATCTTGAAA
GGACTCATTACTGGTGCAACTCCTCCCGATGATGGTAAATGTCAATCCCT
TTCCTGGGTGCAACTCTCACTCCATGTCACTCAGCCCTCAAACGGTCGCC
GCCCACGCCTCATAAAGAGAAGCTTAGCGCATAACCTATTTGCTATCCTC
ACCGGAAAGAAAACCTATCGAAAAATCAGTAACAGAGGACGACCAAAGAA
GTTCTACCTCAAGAAAGTCTTGTTTCTGAACTCCGACATTGCACAAAGCG
CTGACGTCCAAAGTAAAACCTATTATTGCCTTCGTTATGTTTATTTCAAA
GTGATGGAGAGGAGACGAACGCGCGCTATCCTATCAGGTAATATCGGTTC
ATTTGACACTGTTCTCAATTACCCAAGGAGAAGAAGTCTCTTCAAGCAAT
GTGAGCCTGGGAAATCGAGCCCCAATCAAATCTGCATCAGTAATCGAGGC
AGGAGAGACACTTTTCAATACAGACTTTCGACCAGAATTCAAGCAGGAAC
AAATAAAGCTCCCTATTTTGTCGCTTTCACTATTTGAATGATGGAAATTC
TCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTCTCGGT
GATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAATTGGA
ATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGACCTGGG
ATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACCAGTTG
AGAGACATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073827-exon-scaffold_98-1575043694:186003..186519 | TCONS_00073827-exon-scaffold_98-1575043694:186003..186519 | Clytia hemisphaerica | exon |
| TCONS_00073827-exon-scaffold_98-1575043694:181489..183279 | TCONS_00073827-exon-scaffold_98-1575043694:181489..183279 | Clytia hemisphaerica | exon |
| TCONS_00073827-exon-scaffold_98-1510915933:186003..186519 | TCONS_00073827-exon-scaffold_98-1510915933:186003..186519 | Clytia hemisphaerica | exon |
| TCONS_00073827-exon-scaffold_98-1510915933:181489..183279 | TCONS_00073827-exon-scaffold_98-1510915933:181489..183279 | Clytia hemisphaerica | exon |
| TCONS_00073827-exon-scaffold_98-1491911889:186003..186519 | TCONS_00073827-exon-scaffold_98-1491911889:186003..186519 | Clytia hemisphaerica | exon |
| TCONS_00073827-exon-scaffold_98-1491911889:181489..183279 | TCONS_00073827-exon-scaffold_98-1491911889:181489..183279 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:181489..186519 - |
Blast
The following BLAST results are available for this feature:
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