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TCONS_00073827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073827
Unique NameTCONS_00073827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=transcript|length=2308bp
AGAAAGTTCAGTAGTGATGACATCATGGAACAAGTCATCAAGCTTAAGTT
TTGCGGTTGACAGTCGAGGTTCAATGAATGTTTTCTGTCTTAATGTTGTT
CTGTATCTCCCCCGTAGAAGTTTctcaataaaaaacaacaagaagccTGC
AGTGGACACACAGTGAAGAAGATTAGATTTTCAAGCCAAAATATTGTGTA
TAAATACAAGGAGAAGTGAATTTGGAAATCATTATTTTGACACGAGCGTG
GAAAAGAACCGTTATCTGAAGCTTACAACTTATTCAAAAATAATGATGGA
AATTCTCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTC
TCGGTGATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAA
TTGGAATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGAC
CTGGGATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACC
AGTTGAGAGACATCATGGTTGTCAATTTACAGCACGTGACCAAAGGGAAA
TGGGACGAGTTAAAGAAAACCTGTCTGCGTCTTTTCAATTCATCAAGTCT
TCCAAGtgattcaaaaactttcaatcCCATCTTCTACCGGAATGACAACA
CTATCTTGAAAGGACTCATTACTGGTGCAACTCCTCCCGATGATGGTAAA
TGTCAATCCCTTTCCTGGGTGCAACTCTCACTCCATGTCACTCAGCCCTC
AAACGGTCGCCGCCCACGCCTCATAAAGAGAAGCTTAGCGCATAACCTAT
TTGCTATCCTCACCGGAAAGAAAACCTATCGAAAAATCAGTAACAGAGGA
CGACCAAAGAAGTTCTACCTCAAGAAAGTCTTGTTTCTGAACTCCGACAT
TGCACAAAGCGCTGACGTCCAAAGTAAAACCTATTATTGCCTTCGTTATG
TTTATTTCAAAGTGATGGAGAGGAGACGAACGCGCGCTATCCTATCAGGT
AATATCGGTTCATTTGACACTGTTCTCAATTACCCAAGGAGAAGAAGTCT
CTTCAAGCAATGTGAGCCTGGGAAATCGAGCCCCAATCAAATCTGCATCA
GTAATCGAGGCAGGAGAGACACTTTTCAATACAGACTTTCGACCAGAATT
CAAGCAGGAACAAATAAAGCTCCCTATTTTGTCGCTTTCACTATTTGAAT
TTAGAAATATATATTAGATTAGAAGatgtaaaaatgaaattaaccttaaa
attttaattaacattattgaaaaaaaatacataaaccctatttaaatatt
tatttaattAGAAGTTATTGTTCGTCCAATATATTTTACATTATATGAGT
CGCAAAGGGGTAAGATTTTTCAATACGTCCTGCAATTAACAAGCAACTGT
GTCCTGTGATGTTAGGATATTCTATTCCAGTTTTGATTTTGAGCGTTTAT
TTTACACCCAATTAAACTTTCCAATCCATAACCCCACGGTAATATGACTG
TTCAGAGTTTTTAAGTTGAATTATTTTCGCGATATCTCATCATAGCCGCA
AACACAGGCCTTGTATTCGAAATCCccttaatgacgtcatcagtgagAAC
AGCTGAAACCAATCCATGAAATCGATTTTTCATGACGTAATCACTCATCG
TTTCACTGGATCTgtcttctttgtttgtttttgtcatGGCGGGAAAAGTG
AGGATGGAGTGGGCCATTGTATTTTTAATCCAATAAAATTGCTCATTGAT
CAATTGATAAGCCAATGAGTTGTCTTCTTTTCCTAAATCGACCAATAAGA
TTAAAGGAAATCTGCGTCTTTTCATTACTTTGTTTCTTAGATTTGAAAGA
AGCGATCTGAATTCCTCTCTCAGCATTCCTTCGTCATCGTCATTATGTAT
TTTCATAACCGCCACGTAAAATGTGGACCAACGGTACGGCGATTTGACGT
CACGTCGACTACGTCGTCGGTTTTGCGGAAGAAGTAAGGAAAGGATACCG
AATAATTTTTCGACGTCGTTTTCTTTAGGTTGATCTGCTCCTGAGAATCT
CAACATTGGAAATCCTCGTACTCGGTGGGCGAACTGCACTCTAGCCCACG
TGCAGGTACTAGACTGCTTAAGCGCAACATCATAATTACTAGCCTTGAAG
CTCCCATGATCTTTGATGAGAATTCTTCGACTATGTTTGAAGAGGATGAC
ATTTTGGAGATTGTTATCTGAATCCTCGCCGATGATAGAGTGCTGGTGTA
AACACACTTTTAGATTTCTCCGTTGTTCTTCGCTCGTGCTTTGTAGGCCA
GCAAACTa
Run BLAST on NCBI

protein sequence of TCONS_00073827-protein

>TCONS_00073827-protein ID=TCONS_00073827-protein|Name=TCONS_00073827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MMEILTRFICLLLVSMYVVLGDPSCDGRSCTVRELELELNERREDENLFQ
VMTWDVRNEETKKICDVIDQLRDIMVVNLQHVTKGKWDELKKTCLRLFNS
SSLPSDSKTFNPIFYRNDNTILKGLITGATPPDDGKCQSLSWVQLSLHVT
QPSNGRRPRLIKRSLAHNLFAILTGKKTYRKISNRGRPKKFYLKKVLFLN
SDIAQSADVQSKTYYCLRYVYFKVMERRRTRAILSGNIGSFDTVLNYPRR
RSLFKQCEPGKSSPNQICISNRGRRDTFQYRLSTRIQAGTNKAPYFVAFT
I
Run BLAST on NCBI

transcript from alignment at scaffold_98:181489..186519-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=transcript|length=5031bp|location=Sequence derived from alignment at scaffold_98:181489..186519- (Clytia hemisphaerica)
AGAAAGTTCAGTAGTGATGACATCATGGAACAAGTCATCAAGCTTAAGTT TTGCGGTTGACAGTCGAGGTTCAATGAATGTTTTCTGTCTTAATGTTGTT CTGTATCTCCCCCGTAGAAGTTTCTCAATAAAAAACAACAAGAAGCCTGC AGTGGACACACAGTGAAGAAGATTAGATTTTCAAGCCAAAATATTGTGTA TAAATACAAGGAGAAGTGAATTTGGAAATCATTATTTTGACACGAGCGTG GAAAAGAACCGTTATCTGAAGCTTACAACTTATTCAAAAATAATGATGGA AATTCTCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTC TCGGTGATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAA TTGGAATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGAC CTGGGATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACC AGTTGAGAGACATCATGGTAAGAAACGTTGTCTTTTCGTTCAAATTAGGG ATGAGCTGGAGTTTTTACAAGATGCTTAGCTGATTGGTTATTTTTAAACA ATAGGGATGACGCGTTCTTTAGAAAAAGTAATAAAATCGTTTGTCTCAAC ATTTAACGACCAACAGAGTCATCAAAGAACTTGTAAAAACTCCAGCTTGA CCCTCAAATTAACTTGTCTTTTGTCGGCTAATGCTTTGTAACAACAATCC TTCGAGAACTTCGAAAATTCGACTCATTTGACTACAGTCAACTCTCTCTA ATCTTGCAATTCGAATCTTTCTGTATAATTCGAACTAAAGTGTTTATTTC TTCAGTTGGAAGTTACTCCCTGTAAATCGAATCTTTCTTCAATTCGCAAT TCGAAAGAACATTTTTGTCCCTTGCCACCAATTAACAAAATTATGCGTGT AGCAACTTATGAGCCAAAACTGTGTACTTTAGGCGTACAAATTTGATATT TATTACGATTTCGAGGTGTTATAGATTTCCAACTTTTTTGAGAATTTTTC GCGAGCACAAACTGTCACGAATTGCCCTGTTTAGAATCTTCAAAAACATT TACTTTCGCGAAATAGGCCAAAATTCGCGAAAATCGCGAAAGTTTCTGCT CGCGAGAGTTTGTACGCCTAAAGTATTTATCATGGATGTAAGTTAGGATG GTGACCGGTGAATCGTGAATTGAATATTAACCAGGAAATCGTATATTTCT CGCCTGGCTAAGAAATAAACTTCCTAAATCTGTGTATTATTTTTCCCATT TTGATCCGTTTTGTTGATATTTCAACCTCAAAGATTTGCGAGTAATCTGT GGCAGATGCAGATCAAGAGAAAAAAGCGTGGGAACTTCATGTTGAGTGAC ATTTCCGTCTTACGAATGTCGGAAGCTTTTCATCAAATTCTCCTTCATAT TGCTGAAGAGCTGTCTCTTATCAGGCACCACGTGTCTATGGATGATCTAA CTTTAGGTGTACAGCAGAAACTTTCGCGATCATAAGTTTAAGACAAAAGA CAGTTTAAGACAAAAGTTTCAACAATCAAATTTTATTTGTCCCTGTAAAC CGTTTTTCGTGTGAAATTTCTCATTTTAAAGTCTTGATTCGCGAAAGTTT TATGCTCACGAAAAAGATTTTTTCGTCAAATTCGCATCGTATGCGTACGT AAACTTCGCGATTTCTCGACCTAACGAAAGCTTTTGCTTGCTTTAACTTT GGCCTATCTGCCCAACTTGCACACAACATTGTTTCAAAGTTTATCTAATT CTCATAAAACCCATATAACTTCAAATTAACGTTATCTGGGTTTCAAGCGT AGCGTAAATGGAAAATCCACTTTTCTCAAAATCTTTTATTCTTCATGGCA CCACTTGTGAAAACATGTAGAGATTCAATGCACAGTTCGAAGTCTCATAA ATTCTTAAAATAGACCTTAACTGGGCAGCTATTTATGGTAAATTCCACAA CATATTTATCGTGTCCACAGAAAAGCTCTTTGACTTAACCCGTGTTTAAA TCAAAAGCATACCTAACCTACCTATCTAAATTTAAAAAGTGTATTTGAAC TTTAAAGTGTTATCGCGAGTCTAAAGCCGTTTTTGACATAGAAGGGCTTG AGTGAAGTACACCCTAATACTGTTTGCGTCGCAACCACAGATATCTTATG TATAAAGCACTAAATAGAGCTACACTGAATTTATCAAACAACGGCAGGTG AAGCAAAATAATGCGCCAACTTTGCTAAAAGTAGGTCACAGTAGAAACCT TGGATTTCACTATTGAAACTTTTTGACATTGCGATGACTTCAAAATTTCA AGGATCTCGCATACTAAATTGTGACGTCACTTCTTTCAAGATGGCGAATT ATTTTGATTCAAATAGGATACAAAAAGCTCTATCTAGTATTAGCAACACA CGCTCTATCTAAAAGAGTGTGCTCAAAATATGAATTCAGAAATATAATCT TTGTGGTTTTGCCCCGTGTATTCACAGTCGCTTCATTGTGGTTGCTTCAC GATGACATTTTATGGTGCCATAAGCTTTTTAAACACAATAACATCTTTAT ATAGACTATTGGCTCATGGATATTTCATAACTATTAATCTGTGGTCTTAA AAAATGAAACCAAAATTATTTTTCTCTCTCTGCCAAATTTTAAGATACAG TTTACCATTCTTCGTTTCTATCGCATATCGTTTTTTAAGGGTCTACGTAC TCTTGTCTCCCGAATAGACGTCCCCCCCGCTAATTGTTAAGAGACAAAAA AATCCATCCCCCCGCTCTTATTAAGACCCCCCCCCCCCNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNAAAAATGAAACCAAAATCATTTTTCT CTCTCTGCCAAATTTTAAGATACAGTTTACCATTCTTCGTTTCTATCGCA TATCGTTTTTTAAGGGTCTACGTATGAAGAAAACTTTTTCATGCACTGAA AAATAATTCATTAAATTTTTCACCCTTTTCTTTTTTCCAGGTTGTCAATT TACAGCACGTGACCAAAGGGAAATGGGACGAGTTAAAGAAAACCTGTCTG CGTCTTTTCAATTCATCAAGTCTTCCAAGTGATTCAAAAACTTTCAATCC CATCTTCTACCGGAATGACAACACTATCTTGAAAGGACTCATTACTGGTG CAACTCCTCCCGATGATGGTAAATGTCAATCCCTTTCCTGGGTGCAACTC TCACTCCATGTCACTCAGCCCTCAAACGGTCGCCGCCCACGCCTCATAAA GAGAAGCTTAGCGCATAACCTATTTGCTATCCTCACCGGAAAGAAAACCT ATCGAAAAATCAGTAACAGAGGACGACCAAAGAAGTTCTACCTCAAGAAA GTCTTGTTTCTGAACTCCGACATTGCACAAAGCGCTGACGTCCAAAGTAA AACCTATTATTGCCTTCGTTATGTTTATTTCAAAGTGATGGAGAGGAGAC GAACGCGCGCTATCCTATCAGGTAATATCGGTTCATTTGACACTGTTCTC AATTACCCAAGGAGAAGAAGTCTCTTCAAGCAATGTGAGCCTGGGAAATC GAGCCCCAATCAAATCTGCATCAGTAATCGAGGCAGGAGAGACACTTTTC AATACAGACTTTCGACCAGAATTCAAGCAGGAACAAATAAAGCTCCCTAT TTTGTCGCTTTCACTATTTGAATTTAGAAATATATATTAGATTAGAAGAT GTAAAAATGAAATTAACCTTAAAATTTTAATTAACATTATTGAAAAAAAA TACATAAACCCTATTTAAATATTTATTTAATTAGAAGTTATTGTTCGTCC AATATATTTTACATTATATGAGTCGCAAAGGGGTAAGATTTTTCAATACG TCCTGCAATTAACAAGCAACTGTGTCCTGTGATGTTAGGATATTCTATTC CAGTTTTGATTTTGAGCGTTTATTTTACACCCAATTAAACTTTCCAATCC ATAACCCCACGGTAATATGACTGTTCAGAGTTTTTAAGTTGAATTATTTT CGCGATATCTCATCATAGCCGCAAACACAGGCCTTGTATTCGAAATCCCC TTAATGACGTCATCAGTGAGAACAGCTGAAACCAATCCATGAAATCGATT TTTCATGACGTAATCACTCATCGTTTCACTGGATCTGTCTTCTTTGTTTG TTTTTGTCATGGCGGGAAAAGTGAGGATGGAGTGGGCCATTGTATTTTTA ATCCAATAAAATTGCTCATTGATCAATTGATAAGCCAATGAGTTGTCTTC TTTTCCTAAATCGACCAATAAGATTAAAGGAAATCTGCGTCTTTTCATTA CTTTGTTTCTTAGATTTGAAAGAAGCGATCTGAATTCCTCTCTCAGCATT CCTTCGTCATCGTCATTATGTATTTTCATAACCGCCACGTAAAATGTGGA CCAACGGTACGGCGATTTGACGTCACGTCGACTACGTCGTCGGTTTTGCG GAAGAAGTAAGGAAAGGATACCGAATAATTTTTCGACGTCGTTTTCTTTA GGTTGATCTGCTCCTGAGAATCTCAACATTGGAAATCCTCGTACTCGGTG GGCGAACTGCACTCTAGCCCACGTGCAGGTACTAGACTGCTTAAGCGCAA CATCATAATTACTAGCCTTGAAGCTCCCATGATCTTTGATGAGAATTCTT CGACTATGTTTGAAGAGGATGACATTTTGGAGATTGTTATCTGAATCCTC GCCGATGATAGAGTGCTGGTGTAAACACACTTTTAGATTTCTCCGTTGTT CTTCGCTCGTGCTTTGTAGGCCAGCAAACTA

Coding sequence (CDS) from alignment at scaffold_98:181489..186519-

>TCONS_00073827 ID=TCONS_00073827|Name=TCONS_00073827|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_98:181489..186519- (Clytia hemisphaerica)
GTTGTCAATTTACAGCACGTGACCAAAGGGAAATGGGACGAGTTAAAGAA
AACCTGTCTGCGTCTTTTCAATTCATCAAGTCTTCCAAGTGATTCAAAAA
CTTTCAATCCCATCTTCTACCGGAATGACAACACTATCTTGAAAGGACTC
ATTACTGGTGCAACTCCTCCCGATGATGGTAAATGTCAATCCCTTTCCTG
GGTGCAACTCTCACTCCATGTCACTCAGCCCTCAAACGGTCGCCGCCCAC
GCCTCATAAAGAGAAGCTTAGCGCATAACCTATTTGCTATCCTCACCGGA
AAGAAAACCTATCGAAAAATCAGTAACAGAGGACGACCAAAGAAGTTCTA
CCTCAAGAAAGTCTTGTTTCTGAACTCCGACATTGCACAAAGCGCTGACG
TCCAAAGTAAAACCTATTATTGCCTTCGTTATGTTTATTTCAAAGTGATG
GAGAGGAGACGAACGCGCGCTATCCTATCAGGTAATATCGGTTCATTTGA
CACTGTTCTCAATTACCCAAGGAGAAGAAGTCTCTTCAAGCAATGTGAGC
CTGGGAAATCGAGCCCCAATCAAATCTGCATCAGTAATCGAGGCAGGAGA
GACACTTTTCAATACAGACTTTCGACCAGAATTCAAGCAGGAACAAATAA
AGCTCCCTATTTTGTCGCTTTCACTATTTGAATGATGGAAATTCTCACAA
GATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTCTCGGTGATCCG
TCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAATTGGAATTGAA
CGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGACCTGGGATGTGC
GGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACCAGTTGAGAGAC
ATCATGGTTGTCAATTTACAGCACGTGACCAAAGGGAAATGGGACGAGTT
AAAGAAAACCTGTCTGCGTCTTTTCAATTCATCAAGTCTTCCAAGTGATT
CAAAAACTTTCAATCCCATCTTCTACCGGAATGACAACACTATCTTGAAA
GGACTCATTACTGGTGCAACTCCTCCCGATGATGGTAAATGTCAATCCCT
TTCCTGGGTGCAACTCTCACTCCATGTCACTCAGCCCTCAAACGGTCGCC
GCCCACGCCTCATAAAGAGAAGCTTAGCGCATAACCTATTTGCTATCCTC
ACCGGAAAGAAAACCTATCGAAAAATCAGTAACAGAGGACGACCAAAGAA
GTTCTACCTCAAGAAAGTCTTGTTTCTGAACTCCGACATTGCACAAAGCG
CTGACGTCCAAAGTAAAACCTATTATTGCCTTCGTTATGTTTATTTCAAA
GTGATGGAGAGGAGACGAACGCGCGCTATCCTATCAGGTAATATCGGTTC
ATTTGACACTGTTCTCAATTACCCAAGGAGAAGAAGTCTCTTCAAGCAAT
GTGAGCCTGGGAAATCGAGCCCCAATCAAATCTGCATCAGTAATCGAGGC
AGGAGAGACACTTTTCAATACAGACTTTCGACCAGAATTCAAGCAGGAAC
AAATAAAGCTCCCTATTTTGTCGCTTTCACTATTTGAATGATGGAAATTC
TCACAAGATTTATCTGTCTACTGCTAGTCAGCATGTACGTTGTTCTCGGT
GATCCGTCGTGTGACGGACGTAGTTGCACTGTCAGAGAATTGGAATTGGA
ATTGAACGAAAGACGAGAGGATGAGAATTTATTTCAAGTGATGACCTGGG
ATGTGCGGAATGAAGAAACGAAGAAGATATGTGACGTCATTGACCAGTTG
AGAGACATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045847XLOC_045847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073827-proteinTCONS_00073827-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073827-exon-scaffold_98-1575043694:186003..186519TCONS_00073827-exon-scaffold_98-1575043694:186003..186519Clytia hemisphaericaexon
TCONS_00073827-exon-scaffold_98-1575043694:181489..183279TCONS_00073827-exon-scaffold_98-1575043694:181489..183279Clytia hemisphaericaexon
TCONS_00073827-exon-scaffold_98-1510915933:186003..186519TCONS_00073827-exon-scaffold_98-1510915933:186003..186519Clytia hemisphaericaexon
TCONS_00073827-exon-scaffold_98-1510915933:181489..183279TCONS_00073827-exon-scaffold_98-1510915933:181489..183279Clytia hemisphaericaexon
TCONS_00073827-exon-scaffold_98-1491911889:186003..186519TCONS_00073827-exon-scaffold_98-1491911889:186003..186519Clytia hemisphaericaexon
TCONS_00073827-exon-scaffold_98-1491911889:181489..183279TCONS_00073827-exon-scaffold_98-1491911889:181489..183279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:181489..186519 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.23698 4.31783 0.722836 0.561693 5.31433 5.46861 12.9672 15.8055 30.1576 24.8099 18.2004 42.9027 32.0637 23.7519 4.20376 3.34905 10.3982 6.56532 48.2421 43.7481 20.0089 20.1141 17.9368 18.9902 34.7519 41.0549 55.1364 64.7311 343.314 444.464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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