TCONS_00073801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073801
Unique NameTCONS_00073801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073801 ID=TCONS_00073801|Name=TCONS_00073801|organism=Clytia hemisphaerica|type=transcript|length=433bp
CGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCCA
GCGACACAGCATTAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgtt
tcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTAAAAAAACTTA
CAGCACCAGGGACAGCAACATGCCTATAAAAATCCCGATGCTTGGCCAAT
GAATAAATGTATTCGCGAAGCAAATCTATTTCAATTATAACAAGATGAAG
AGAAATTCAGCAGCCAATGGAATCTGTCGTTATTTACGTTCATTTCAACT
ACCCACTCCTGACAAACTACTATTAATCCGTTCGAGATGGTATAATTCAT
TACTATCGACATCGAATCATTCACGGGGAATCCACGTTGTTAGATCCTTG
AAGCAATATTATCCAACATCCAATCTATGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_98:251266..252138+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073801 ID=TCONS_00073801|Name=TCONS_00073801|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at scaffold_98:251266..252138+ (Clytia hemisphaerica)
CGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCCA
GCGACACAGCATTAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgtt
tcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTAAAAAAACTTA
CAGCACCAGGGACAGCAACATGCCTATAAAAATCCCGATGCTTGGCCAAT
GAATAAATGTATTCGCGAAGCAAATCTATTTCAATTATAACAAGGTACGC
AATTCAATGATTCAATTCGTTCACCTTTCTACATATTCACTTGTCATAGT
AGACTAGAACAGAATGGATCATATGGTAATTTCAGAACGTTATACTGGAC
TTACCGTGTGGTAGAGTCTAGAGAATCATTTACGCATTACGAATCATAGT
ACTGCTCCATTTTTTCTGAATCTGTTTTTCGACACTTGATGCAATAGACT
ATATCGGTTTTcagaattctccccgaatgattacccatgatgcattgcgc
aaaaaaaattcacggacgatatcgacttcgtgaatttttttgtgcaatgc
atcatgggtaatatttcgggagaattcggaaagccgatatatATCGTCTA
TTTCCTCGTGTTTCtcgtattggttgatcttcaattttcaatagCTTTGC
CATGCTTCAGATATGTATTTTTTACCCGTTTCAGATGAAGAGAAATTCAG
CAGCCAATGGAATCTGTCGTTATTTACGTTCATTTCAACTACCCACTCCT
GACAAACTACTATTAATCCGTTCGAGATGGTATAATTCATTACTATCGAC
ATCGAATCATTCACGGGGAATCCACGTTGTTAGATCCTTGAAGCAATATT
ATCCAACATCCAATCTATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045839XLOC_045839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073801-exon-scaffold_98-1491911889:251266..251509TCONS_00073801-exon-scaffold_98-1491911889:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1510915933:251266..251509TCONS_00073801-exon-scaffold_98-1510915933:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1575043694:251266..251509TCONS_00073801-exon-scaffold_98-1575043694:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1491911889:251950..252138TCONS_00073801-exon-scaffold_98-1491911889:251950..252138Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1510915933:251950..252138TCONS_00073801-exon-scaffold_98-1510915933:251950..252138Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1575043694:251950..252138TCONS_00073801-exon-scaffold_98-1575043694:251950..252138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:251266..252138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.92776	2.93222	2.41643	1.15925	0	1.01268	0.610878	1.33443	0.476438	1.06357	1.76509	0.66858	0.469785	0.602428	0.996437	0.69428	0.951179	1.01551	0	0.221776	0.765667	0.264998	3.09335	2.71445	0.340097	0.455293	0.554552	0.231774	1.28917	2.07143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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