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TCONS_00073801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073801
Unique NameTCONS_00073801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073801 ID=TCONS_00073801|Name=TCONS_00073801|organism=Clytia hemisphaerica|type=transcript|length=433bp
CGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCCA
GCGACACAGCATTAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgtt
tcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTAAAAAAACTTA
CAGCACCAGGGACAGCAACATGCCTATAAAAATCCCGATGCTTGGCCAAT
GAATAAATGTATTCGCGAAGCAAATCTATTTCAATTATAACAAGATGAAG
AGAAATTCAGCAGCCAATGGAATCTGTCGTTATTTACGTTCATTTCAACT
ACCCACTCCTGACAAACTACTATTAATCCGTTCGAGATGGTATAATTCAT
TACTATCGACATCGAATCATTCACGGGGAATCCACGTTGTTAGATCCTTG
AAGCAATATTATCCAACATCCAATCTATGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_98:251266..252138+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073801 ID=TCONS_00073801|Name=TCONS_00073801|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at scaffold_98:251266..252138+ (Clytia hemisphaerica)
CGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCCA GCGACACAGCATTAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgtt tcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTAAAAAAACTTA CAGCACCAGGGACAGCAACATGCCTATAAAAATCCCGATGCTTGGCCAAT GAATAAATGTATTCGCGAAGCAAATCTATTTCAATTATAACAAGGTACGC AATTCAATGATTCAATTCGTTCACCTTTCTACATATTCACTTGTCATAGT AGACTAGAACAGAATGGATCATATGGTAATTTCAGAACGTTATACTGGAC TTACCGTGTGGTAGAGTCTAGAGAATCATTTACGCATTACGAATCATAGT ACTGCTCCATTTTTTCTGAATCTGTTTTTCGACACTTGATGCAATAGACT ATATCGGTTTTcagaattctccccgaatgattacccatgatgcattgcgc aaaaaaaattcacggacgatatcgacttcgtgaatttttttgtgcaatgc atcatgggtaatatttcgggagaattcggaaagccgatatatATCGTCTA TTTCCTCGTGTTTCtcgtattggttgatcttcaattttcaatagCTTTGC CATGCTTCAGATATGTATTTTTTACCCGTTTCAGATGAAGAGAAATTCAG CAGCCAATGGAATCTGTCGTTATTTACGTTCATTTCAACTACCCACTCCT GACAAACTACTATTAATCCGTTCGAGATGGTATAATTCATTACTATCGAC ATCGAATCATTCACGGGGAATCCACGTTGTTAGATCCTTGAAGCAATATT ATCCAACATCCAATCTATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045839XLOC_045839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073801-exon-scaffold_98-1491911889:251266..251509TCONS_00073801-exon-scaffold_98-1491911889:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1510915933:251266..251509TCONS_00073801-exon-scaffold_98-1510915933:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1575043694:251266..251509TCONS_00073801-exon-scaffold_98-1575043694:251266..251509Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1491911889:251950..252138TCONS_00073801-exon-scaffold_98-1491911889:251950..252138Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1510915933:251950..252138TCONS_00073801-exon-scaffold_98-1510915933:251950..252138Clytia hemisphaericaexon
TCONS_00073801-exon-scaffold_98-1575043694:251950..252138TCONS_00073801-exon-scaffold_98-1575043694:251950..252138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:251266..252138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.92776 2.93222 2.41643 1.15925 0 1.01268 0.610878 1.33443 0.476438 1.06357 1.76509 0.66858 0.469785 0.602428 0.996437 0.69428 0.951179 1.01551 0 0.221776 0.765667 0.264998 3.09335 2.71445 0.340097 0.455293 0.554552 0.231774 1.28917 2.07143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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