TCONS_00073783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073783
Unique NameTCONS_00073783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073783 ID=TCONS_00073783|Name=TCONS_00073783|organism=Clytia hemisphaerica|type=transcript|length=393bp
AGAGGATTTGATGATTTCGTTGATATGTGTTGACCATGTTAAGTTATGAT
CAAGATAGACACCAAGCAATTTAACGTAGGTTTTGTGCTCGATTGATCGG
CCAGAGCAGCGGAATAGTTGgctttgattttttggaaaattcctcAAGCG
ttgagaatgaaaaatgatgagtTGTAGTTTGTCACTATTAAATAGTAGGT
TACTGTCTTCTGACCACGACTGAAGGTTCTCAACATCCTTCTCCATATCC
TTGATGGTTTGCTGCAAGTCCTTGAGTTTACAGTGACGGTAAAGGGTGGT
ATCGTCAGCGTATTGAATACTGGATGATGTTACTTGATCTGAAAGCTCGA
CGACATAAAGGTTGAATAACACAGGGCCTAATATACTACCCTG
Run BLAST on NCBI

protein sequence of TCONS_00073783-protein

>TCONS_00073783-protein ID=TCONS_00073783-protein|Name=TCONS_00073783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
QGSILGPVLFNLYVVELSDQVTSSSIQYADDTTLYRHCKLKDLQQTIKDM
EKDVENLQSWSEDSNLLFNSDKLQLIIFHSQRLRNFPKNQSQLFRCSGRS
IEHKTYVKLLGVYLDHNLTWSTHINEIIKSS
Run BLAST on NCBI

transcript from alignment at scaffold_97:1041083..1041475

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073783 ID=TCONS_00073783|Name=TCONS_00073783|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_97:1041083..1041475 (Clytia hemisphaerica)
CAGGGTAGTATATTAGGCCCTGTGTTATTCAACCTTTATGTCGTCGAGCT
TTCAGATCAAGTAACATCATCCAGTATTCAATACGCTGACGATACCACCC
TTTACCGTCACTGTAAACTCAAGGACTTGCAGCAAACCATCAAGGATATG
GAGAAGGATGTTGAGAACCTTCAGTCGTGGTCAGAAGACAGTAACCTACT
ATTTAATAGTGACAAACTACAactcatcatttttcattctcaaCGCTTga
ggaattttccaaaaaatcaaagcCAACTATTCCGCTGCTCTGGCCGATCA
ATCGAGCACAAAACCTACGTTAAATTGCTTGGTGTCTATCTTGATCATAA
CTTAACATGGTCAACACATATCAACGAAATCATCAAATCCTCT

Coding sequence (CDS) from alignment at scaffold_97:1041083..1041475

>TCONS_00073783 ID=TCONS_00073783|Name=TCONS_00073783|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_97:1041083..1041475 (Clytia hemisphaerica)
CAGGGTAGTATATTAGGCCCTGTGTTATTCAACCTTTATGTCGTCGAGCT
TTCAGATCAAGTAACATCATCCAGTATTCAATACGCTGACGATACCACCC
TTTACCGTCACTGTAAACTCAAGGACTTGCAGCAAACCATCAAGGATATG
GAGAAGGATGTTGAGAACCTTCAGTCGTGGTCAGAAGACAGTAACCTACT
ATTTAATAGTGACAAACTACAactcatcatttttcattctcaaCGCTTga
ggaattttccaaaaaatcaaagcCAACTATTCCGCTGCTCTGGCCGATCA
ATCGAGCACAAAACCTACGTTAAATTGCTTGGTGTCTATCTTGATCATAA
CTTAACATGGTCAACACATATCAACGAAATCATCAAATCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045829XLOC_045829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073783-exon-scaffold_97-1491911889:1041083..1041475TCONS_00073783-exon-scaffold_97-1491911889:1041083..1041475Clytia hemisphaericaexon
TCONS_00073783-exon-scaffold_97-1510915933:1041083..1041475TCONS_00073783-exon-scaffold_97-1510915933:1041083..1041475Clytia hemisphaericaexon
TCONS_00073783-exon-scaffold_97-1575043694:1041083..1041475TCONS_00073783-exon-scaffold_97-1575043694:1041083..1041475Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073783-proteinTCONS_00073783-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:1041083..1041475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.927705	0	0	0.0490964	5.39423	3.99344	7.8436	7.75826	2.08141	3.31741	2.17573	2.6436	1.97222	1.82981	0.962652	2.19357	0.768634	1.30908	0.409931	1.13216	0	0.272792	0.030108	0.140407	0.651691	1.02481	0	1.78656	0.96472	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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