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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073780 ID=TCONS_00073780|Name=TCONS_00073780|organism=Clytia hemisphaerica|type=transcript|length=1466bp
ttttttttatcttatatTTTTTGGTTACTtatactttttacaaaaataat
tctctttatataaaacctttttgaaattttaatttaaaataataaatttg
tcAACTTTAATCCTACTAttgtatataaaaatattttcaaaaaatatgta
CAAATCTTTCTTTATAATACTATTTGTATAAATTTATctaaaaaacgcta
aaattaaaaaaaattaatctaaaaattactggatgaaaattttttaaact
tcagTCAGTGTTCGATTCCGCCTTCTAATTTGTTTATAGAAAGCCTCATC
TTTTGAGCTCTTGAATTTATAGTTCAATATTTTCCAATTTGTTATATCAA
GAAATAGGAGTTCCTGTAATTGATTTTCATGACCCATTAAGCCTTTAATT
GCCATTTGTACATTATATTTCTTGATCTCCTGGGTACATTGCAGAAAGAC
TTTTTTCATTCGTTGTTTAGTGTTCTGTTTTAAACTCGTTGTTTTCTCAA
AACATTGCATGATGACGTAGaatgaaatgtttttgttaTCTTCAGAAGTA
TATTCAAAATATAAATCCCCGATTttcgtttcttcttttttgcgGGAAAC
AATGTTTTTAATTGCGGTGATTTTGCCGTCCGACTTGTTGTCGGCGTCGG
TATATTTATTACAAAAGGCATCGTAGGATACACTCTTTAATGCAAAGTTC
CTTTTAATTCTACCATTGTCTTCGGCGATAATGACGTTATTGAGGAGGCT
AGATCGTACGAAGGATGAGCAGGCAGCTTCATTAACACATCCACGATCTA
GAgatttttcagcaaaatctgTATCAACATCAGCAACCAATTTCAAGACT
TTCATGaattcttttttgtttgaaacttcaaatcttGTATTATAACACAT
TCGTTGCTCCACAATGTCTGAATTAcgtttcaaataaaatttcttctcaa
AACTACACGTTGTTCGTGATTTGACGAAGCTAACAACGATGTCAGCTTCG
GTGGATATCTTGCGTGCTCGTGACAAACTCGGTAGTTCAACTGCGTTCAG
TGACATCGTGCTCATCAATAACTTCTTATGCTTGAATTGACAGTGGTGGT
TCATCTTGAATATGTattccaaaaatacaaatttccaaataaaaacACAC
TTGTGATAATAATGATTAATAAAGGTTTTGATGCTGCTTGACGCGCTATG
TTTAAAGCAGTCCTGCTGCTATACTTGTTAAGCTATGAATGATTGCTGAT
CTGTCATCTCGTTGTTGCTTTTATAGCTCCTTTAAAGGTTCGATTGTAAA
GAACTGTAAGAAGTCGTTAAGAgttgtcaatcaaataatgacaATGTACT
AATAAGACACGTTAATTGTCAACATCAACGTTTCCCTCGCATGAACATTA
CAATATGGAAACACACTCCATCGTTTGGTTTCCGTAAGTAAACGACTCCT
CCGTAGTGACTGATTT Run BLAST on NCBI protein sequence of TCONS_00073780-protein >TCONS_00073780-protein ID=TCONS_00073780-protein|Name=TCONS_00073780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MNHHCQFKHKKLLMSTMSLNAVELPSLSRARKISTEADIVVSFVKSRTTC
SFEKKFYLKRNSDIVEQRMCYNTRFEVSNKKEFMKVLKLVADVDTDFAEK
SLDRGCVNEAACSSFVRSSLLNNVIIAEDNGRIKRNFALKSVSYDAFCNK
YTDADNKSDGKITAIKNIVSRKKEETKIGDLYFEYTSEDNKNISFYVIMQ
CFEKTTSLKQNTKQRMKKVFLQCTQEIKKYNVQMAIKGLMGHENQLQELL
FLDITNWKILNYKFKSSKDEAFYKQIRRRNRTLTEV Run BLAST on NCBI transcript from alignment at scaffold_97:978780..980245 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073780 ID=TCONS_00073780|Name=TCONS_00073780|organism=Clytia hemisphaerica|type=transcript|length=1466bp|location=Sequence derived from alignment at scaffold_97:978780..980245 (Clytia hemisphaerica)
AAATCAGTCACTACGGAGGAGTCGTTTACTTACGGAAACCAAACGATGGA
GTGTGTTTCCATATTGTAATGTTCATGCGAGGGAAACGTTGATGTTGACA
ATTAACGTGTCTTATTAGTACATtgtcattatttgattgacaacTCTTAA
CGACTTCTTACAGTTCTTTACAATCGAACCTTTAAAGGAGCTATAAAAGC
AACAACGAGATGACAGATCAGCAATCATTCATAGCTTAACAAGTATAGCA
GCAGGACTGCTTTAAACATAGCGCGTCAAGCAGCATCAAAACCTTTATTA
ATCATTATTATCACAAGTGTgtttttatttggaaatttgtatttttggaa
tACATATTCAAGATGAACCACCACTGTCAATTCAAGCATAAGAAGTTATT
GATGAGCACGATGTCACTGAACGCAGTTGAACTACCGAGTTTGTCACGAG
CACGCAAGATATCCACCGAAGCTGACATCGTTGTTAGCTTCGTCAAATCA
CGAACAACGTGTAGTTttgagaagaaattttatttgaaacgTAATTCAGA
CATTGTGGAGCAACGAATGTGTTATAATACaagatttgaagtttcaaaca
aaaaagaattCATGAAAGTCTTGAAATTGGTTGCTGATGTTGATAcagat
tttgctgaaaaatcTCTAGATCGTGGATGTGTTAATGAAGCTGCCTGCTC
ATCCTTCGTACGATCTAGCCTCCTCAATAACGTCATTATCGCCGAAGACA
ATGGTAGAATTAAAAGGAACTTTGCATTAAAGAGTGTATCCTACGATGCC
TTTTGTAATAAATATACCGACGCCGACAACAAGTCGGACGGCAAAATCAC
CGCAATTAAAAACATTGTTTCCcgcaaaaaagaagaaacgaaAATCGGGG
ATTTATATTTTGAATATACTTCTGAAGAtaacaaaaacatttcattCTAC
GTCATCATGCAATGTTTTGAGAAAACAACGAGTTTAAAACAGAACACTAA
ACAACGAATGAAAAAAGTCTTTCTGCAATGTACCCAGGAGATCAAGAAAT
ATAATGTACAAATGGCAATTAAAGGCTTAATGGGTCATGAAAATCAATTA
CAGGAACTCCTATTTCTTGATATAACAAATTGGAAAATATTGAACTATAA
ATTCAAGAGCTCAAAAGATGAGGCTTTCTATAAACAAATTAGAAGGCGGA
ATCGAACACTGActgaagtttaaaaaattttcatccagtaatttttagat
taattttttttaattttagcgttttttagATAAATTTATACAAATAGTAT
TATAAAGAAAGATTTGtacatattttttgaaaatatttttatatacaaTA
GTAGGATTAAAGTTgacaaatttattattttaaattaaaatttcaaaaag
gttttatataaagagaattatttttgtaaaaagtataAGTAACCAAAAAa
tataagataaaaaaaa Coding sequence (CDS) from alignment at scaffold_97:978780..980245 >TCONS_00073780 ID=TCONS_00073780|Name=TCONS_00073780|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_97:978780..980245 (Clytia hemisphaerica)
ATGAACCACCACTGTCAATTCAAGCATAAGAAGTTATTGATGAGCACGAT
GTCACTGAACGCAGTTGAACTACCGAGTTTGTCACGAGCACGCAAGATAT
CCACCGAAGCTGACATCGTTGTTAGCTTCGTCAAATCACGAACAACGTGT
AGTTttgagaagaaattttatttgaaacgTAATTCAGACATTGTGGAGCA
ACGAATGTGTTATAATACaagatttgaagtttcaaacaaaaaagaattCA
TGAAAGTCTTGAAATTGGTTGCTGATGTTGATAcagattttgctgaaaaa
tcTCTAGATCGTGGATGTGTTAATGAAGCTGCCTGCTCATCCTTCGTACG
ATCTAGCCTCCTCAATAACGTCATTATCGCCGAAGACAATGGTAGAATTA
AAAGGAACTTTGCATTAAAGAGTGTATCCTACGATGCCTTTTGTAATAAA
TATACCGACGCCGACAACAAGTCGGACGGCAAAATCACCGCAATTAAAAA
CATTGTTTCCcgcaaaaaagaagaaacgaaAATCGGGGATTTATATTTTG
AATATACTTCTGAAGAtaacaaaaacatttcattCTACGTCATCATGCAA
TGTTTTGAGAAAACAACGAGTTTAAAACAGAACACTAAACAACGAATGAA
AAAAGTCTTTCTGCAATGTACCCAGGAGATCAAGAAATATAATGTACAAA
TGGCAATTAAAGGCTTAATGGGTCATGAAAATCAATTACAGGAACTCCTA
TTTCTTGATATAACAAATTGGAAAATATTGAACTATAAATTCAAGAGCTC
AAAAGATGAGGCTTTCTATAAACAAATTAGAAGGCGGAATCGAACACTGA
ctgaagtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073780-exon-scaffold_97-1491911889:978780..980245 | TCONS_00073780-exon-scaffold_97-1491911889:978780..980245 | Clytia hemisphaerica | exon |
| TCONS_00073780-exon-scaffold_97-1510915933:978780..980245 | TCONS_00073780-exon-scaffold_97-1510915933:978780..980245 | Clytia hemisphaerica | exon |
| TCONS_00073780-exon-scaffold_97-1575043694:978780..980245 | TCONS_00073780-exon-scaffold_97-1575043694:978780..980245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:978780..980245 . |
Blast
The following BLAST results are available for this feature:
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