TCONS_00073775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073775
Unique NameTCONS_00073775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073775 ID=TCONS_00073775|Name=TCONS_00073775|organism=Clytia hemisphaerica|type=transcript|length=281bp
ACTTCAAAGCAACAGAGCGTGATTGGAAATGTAGAGGGTGTGAGATAGAA
AACGAAACAACTGAACACGTGGTACAATGCAGAAATATGAAAACGAAAAT
TTCGTGGCCGGACGAAAAAATGATAGATATGAATGATATTTTTATTACGG
ATAATTTGGATAAGATAAATACGActataaaatttttcaaaacaatgata
gaacattttatataaatttaaagCAAAGAATAGTAGGTAGCTAGTTCATG
CCGTTTTCACCTCTTGGAGCTTTTACcaaac
Run BLAST on NCBI

transcript from alignment at scaffold_97:827981..828261

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073775 ID=TCONS_00073775|Name=TCONS_00073775|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at scaffold_97:827981..828261 (Clytia hemisphaerica)
gtttgGTAAAAGCTCCAAGAGGTGAAAACGGCATGAACTAGCTACCTACT
ATTCTTTGctttaaatttatataaaatgttctatcattgttttgaaaaat
tttatagTCGTATTTATCTTATCCAAATTATCCGTAATAAAAATATCATT
CATATCTATCATTTTTTCGTCCGGCCACGAAATTTTCGTTTTCATATTTC
TGCATTGTACCACGTGTTCAGTTGTTTCGTTTTCTATCTCACACCCTCTA
CATTTCCAATCACGCTCTGTTGCTTTGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045821XLOC_045821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073775-exon-scaffold_97-1491911889:827981..828261TCONS_00073775-exon-scaffold_97-1491911889:827981..828261Clytia hemisphaericaexon
TCONS_00073775-exon-scaffold_97-1510915933:827981..828261TCONS_00073775-exon-scaffold_97-1510915933:827981..828261Clytia hemisphaericaexon
TCONS_00073775-exon-scaffold_97-1575043694:827981..828261TCONS_00073775-exon-scaffold_97-1575043694:827981..828261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:827981..828261 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487968	1.90338	1.105	1.08107	4.60637	2.60001	4.39152	9.39723	6.16802	15.2802	13.8426	5.84971	6.16611	5.72951	3.6021	6.54179	1.83158	0.750924	0.518721	9.22767	1.88718	2.7615	2.23798	0	2.09564	3.74062	16.0584	10.7112	9.20731	9.38079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top