TCONS_00073771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073771
Unique NameTCONS_00073771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073771 ID=TCONS_00073771|Name=TCONS_00073771|organism=Clytia hemisphaerica|type=transcript|length=712bp
CACCAGCTAAGGATCCTAGCACGATTCCAACAATAGCTCCTGCAGAAAGC
TTTGATCGTTTCTTTTCAACGTCACGATAGTTTGGATGGTTCAATCCTCG
TGTATTGGTATTTGGCAGCCTTCTTGAAATACGTCGTCGGAAGTTAGGGA
GTCGTCTATGATTATTGATTCTTGAATTAATTCTCCGTATGTTTGTTGAG
GTGCGGCGGACATTGGCTGTGTTTAAGATCCGATTATTAATGAATTGAGG
TGAGATAGATCTCGTTTTGAGATTAGGATAAGAGGGAAGAGAGTGAACGT
ATGGTTGAAAATGAGTTCTGCGACCAACACTGGTACGGCCTGTTGAGGAG
TGCCCAGTACCTGAGCGATAAGAACGCCCACCGCTTGATCGACCTCCGCC
TCCACGTCCTCCTTTAGGGGAACGTCTGATTCTCAAATAGACTTCATCGT
CATCGTCATCAACTTGTTCGTTTTTGTTACCAAAGCTGACATCTTCGTTT
GAATTGCTGAGTTTTTGTGATTGTGAGTCTTCCTTCACAGGTGACTCAAG
TTTTCCATCTTCTTGAACAAATTTCAAGACATTTGATTTGCCAATTTGGT
CGTTTTTTCGTTGAGAAGATTCGTTTATTTGAGATGATTTTAATGCATCA
GCAGCAAGTATGATAATCACcagacaaaaatttaatttatgcaTCGACTG
TAGTTAACGTTG
Run BLAST on NCBI

protein sequence of TCONS_00073771-protein

>TCONS_00073771-protein ID=TCONS_00073771-protein|Name=TCONS_00073771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MHKLNFCLVIIILAADALKSSQINESSQRKNDQIGKSNVLKFVQEDGKLE
SPVKEDSQSQKLSNSNEDVSFGNKNEQVDDDDDEVYLRIRRSPKGGRGGG
GRSSGGRSYRSGTGHSSTGRTSVGRRTHFQPYVHSLPSYPNLKTRSISPQ
FINNRILNTANVRRTSTNIRRINSRINNHRRLPNFRRRISRRLPNTNTRG
LNHPNYRDVEKKRSKLSAGAIVGIVLGSLAG
Run BLAST on NCBI

transcript from alignment at scaffold_97:735156..735867

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073771 ID=TCONS_00073771|Name=TCONS_00073771|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at scaffold_97:735156..735867 (Clytia hemisphaerica)
CAACGTTAACTACAGTCGAtgcataaattaaatttttgtctgGTGATTAT
CATACTTGCTGCTGATGCATTAAAATCATCTCAAATAAACGAATCTTCTC
AACGAAAAAACGACCAAATTGGCAAATCAAATGTCTTGAAATTTGTTCAA
GAAGATGGAAAACTTGAGTCACCTGTGAAGGAAGACTCACAATCACAAAA
ACTCAGCAATTCAAACGAAGATGTCAGCTTTGGTAACAAAAACGAACAAG
TTGATGACGATGACGATGAAGTCTATTTGAGAATCAGACGTTCCCCTAAA
GGAGGACGTGGAGGCGGAGGTCGATCAAGCGGTGGGCGTTCTTATCGCTC
AGGTACTGGGCACTCCTCAACAGGCCGTACCAGTGTTGGTCGCAGAACTC
ATTTTCAACCATACGTTCACTCTCTTCCCTCTTATCCTAATCTCAAAACG
AGATCTATCTCACCTCAATTCATTAATAATCGGATCTTAAACACAGCCAA
TGTCCGCCGCACCTCAACAAACATACGGAGAATTAATTCAAGAATCAATA
ATCATAGACGACTCCCTAACTTCCGACGACGTATTTCAAGAAGGCTGCCA
AATACCAATACACGAGGATTGAACCATCCAAACTATCGTGACGTTGAAAA
GAAACGATCAAAGCTTTCTGCAGGAGCTATTGTTGGAATCGTGCTAGGAT
CCTTAGCTGGTG

Coding sequence (CDS) from alignment at scaffold_97:735156..735867

>TCONS_00073771 ID=TCONS_00073771|Name=TCONS_00073771|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_97:735156..735867 (Clytia hemisphaerica)
AtgcataaattaaatttttgtctgGTGATTATCATACTTGCTGCTGATGC
ATTAAAATCATCTCAAATAAACGAATCTTCTCAACGAAAAAACGACCAAA
TTGGCAAATCAAATGTCTTGAAATTTGTTCAAGAAGATGGAAAACTTGAG
TCACCTGTGAAGGAAGACTCACAATCACAAAAACTCAGCAATTCAAACGA
AGATGTCAGCTTTGGTAACAAAAACGAACAAGTTGATGACGATGACGATG
AAGTCTATTTGAGAATCAGACGTTCCCCTAAAGGAGGACGTGGAGGCGGA
GGTCGATCAAGCGGTGGGCGTTCTTATCGCTCAGGTACTGGGCACTCCTC
AACAGGCCGTACCAGTGTTGGTCGCAGAACTCATTTTCAACCATACGTTC
ACTCTCTTCCCTCTTATCCTAATCTCAAAACGAGATCTATCTCACCTCAA
TTCATTAATAATCGGATCTTAAACACAGCCAATGTCCGCCGCACCTCAAC
AAACATACGGAGAATTAATTCAAGAATCAATAATCATAGACGACTCCCTA
ACTTCCGACGACGTATTTCAAGAAGGCTGCCAAATACCAATACACGAGGA
TTGAACCATCCAAACTATCGTGACGTTGAAAAGAAACGATCAAAGCTTTC
TGCAGGAGCTATTGTTGGAATCGTGCTAGGATCCTTAGCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045817XLOC_045817Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073771-proteinTCONS_00073771-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073771-exon-scaffold_97-1491911889:735156..735867TCONS_00073771-exon-scaffold_97-1491911889:735156..735867Clytia hemisphaericaexon
TCONS_00073771-exon-scaffold_97-1510915933:735156..735867TCONS_00073771-exon-scaffold_97-1510915933:735156..735867Clytia hemisphaericaexon
TCONS_00073771-exon-scaffold_97-1575043694:735156..735867TCONS_00073771-exon-scaffold_97-1575043694:735156..735867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:735156..735867 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141065	0.27512	0.479162	0.468785	15.4089	16.3854	6.52899	7.04619	9.62867	35.7063	20.7945	17.8032	90.8624	20.4604	21.5472	77.8805	9.26596	31.5853	6.37308	9.57193	0.0681946	0	0.323484	0.514664	0.454364	0.0675849	25.1456	18.9917	9.47253	2.31305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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