TCONS_00073764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073764
Unique NameTCONS_00073764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073764 ID=TCONS_00073764|Name=TCONS_00073764|organism=Clytia hemisphaerica|type=transcript|length=863bp
cagggggacggctattaggtacccgagagtaagctttacctaaaaatatg
tgtaaaaaattcaaaaaaagcaGCCCAAAATGGATGATGAACGAAACGTA
TTATAAACTTCCTATGGTAAAAATGCATGAATATAagctttgtaaataaa
aatctttCCTAAAATAAACTACAAATATATACATTAAAAAACTTTacgaa
taaaataaaaacaaaagacaaTCGTGTTAGAAGTATAAAGTTCAGCCAAT
CAATCGTGTGTCCAACAGGGTTGGAAATTGTCTTTCCATCTGAATTATGC
AAACTGCATCAATAGCATTTTTTGTCTGTGTTTTATACCAATCCATAGat
tcatgaaaatatttaaaaagctaTCAAAAACCGACAATTTATTAGTACTC
ATGATTATCATATCATTCCTCTCTTAAATTCTCTTGATTCAAGAATGTGA
AAACGCGATTCTCAGACAAAGCCATAGCAATTATTGAATTGTGAGTGAGA
GGGTAGTTAATATTATTCCCAATGTGTTCTCCATTGACGAAAGTCCCATT
GAGACCATGATTTTTGATCCATACGGTGCCATTGTGTTGTCTACTAATCG
TAAAATGTACCTTTGATATATTCATGTATTCTTTTAAAGTAAGTGTATCC
TTATGAAACATATAATCACACGTGGGTGCACGACCAAATTTGGTTTCCCC
TTGATTGGTGAGGTTGGCATACATATATTTATTTGAATCAAAAGGAAACA
ATATACCCCAAGGTTGAGCATCCATACCTTTTAGTTAACGTGTGCTCCAA
ATTTTTCTGCTATATTCTtttcaagataaaaaagaaaaaggtcatCAGAT
GTCGTTAAATACT
Run BLAST on NCBI

protein sequence of TCONS_00073764-protein

>TCONS_00073764-protein ID=TCONS_00073764-protein|Name=TCONS_00073764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MDAQPWGILFPFDSNKYMYANLTNQGETKFGRAPTCDYMFHKDTLTLKEY
MNISKVHFTISRQHNGTVWIKNHGLNGTFVNGEHIGNNINYPLTHNSIIA
MALSENRVFTFLNQENLREE
Run BLAST on NCBI

transcript from alignment at scaffold_97:682734..683596

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073764 ID=TCONS_00073764|Name=TCONS_00073764|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_97:682734..683596 (Clytia hemisphaerica)
AGTATTTAACGACATCTGatgacctttttcttttttatcttgaaaAGAAT
ATAGCAGAAAAATTTGGAGCACACGTTAACTAAAAGGTATGGATGCTCAA
CCTTGGGGTATATTGTTTCCTTTTGATTCAAATAAATATATGTATGCCAA
CCTCACCAATCAAGGGGAAACCAAATTTGGTCGTGCACCCACGTGTGATT
ATATGTTTCATAAGGATACACTTACTTTAAAAGAATACATGAATATATCA
AAGGTACATTTTACGATTAGTAGACAACACAATGGCACCGTATGGATCAA
AAATCATGGTCTCAATGGGACTTTCGTCAATGGAGAACACATTGGGAATA
ATATTAACTACCCTCTCACTCACAATTCAATAATTGCTATGGCTTTGTCT
GAGAATCGCGTTTTCACATTCTTGAATCAAGAGAATTTAAGAGAGGAATG
ATATGATAATCATGAGTACTAATAAATTGTCGGTTTTTGAtagcttttta
aatattttcatgaatCTATGGATTGGTATAAAACACAGACAAAAAATGCT
ATTGATGCAGTTTGCATAATTCAGATGGAAAGACAATTTCCAACCCTGTT
GGACACACGATTGATTGGCTGAACTTTATACTTCTAACACGAttgtcttt
tgtttttattttattcgtAAAGTTTTTTAATGTATATATTTGTAGTTTAT
TTTAGGaaagatttttatttacaaagctTATATTCATGCATTTTTACCAT
AGGAAGTTTATAATACGTTTCGTTCATCATCCATTTTGGGCtgctttttt
tgaattttttacacatatttttaggtaaagcttactctcgggtacctaat
agccgtccccctg

Coding sequence (CDS) from alignment at scaffold_97:682734..683596

>TCONS_00073764 ID=TCONS_00073764|Name=TCONS_00073764|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_97:682734..683596 (Clytia hemisphaerica)
ATGGATGCTCAACCTTGGGGTATATTGTTTCCTTTTGATTCAAATAAATA
TATGTATGCCAACCTCACCAATCAAGGGGAAACCAAATTTGGTCGTGCAC
CCACGTGTGATTATATGTTTCATAAGGATACACTTACTTTAAAAGAATAC
ATGAATATATCAAAGGTACATTTTACGATTAGTAGACAACACAATGGCAC
CGTATGGATCAAAAATCATGGTCTCAATGGGACTTTCGTCAATGGAGAAC
ACATTGGGAATAATATTAACTACCCTCTCACTCACAATTCAATAATTGCT
ATGGCTTTGTCTGAGAATCGCGTTTTCACATTCTTGAATCAAGAGAATTT
AAGAGAGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045810XLOC_045810Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073764-proteinTCONS_00073764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073764-exon-scaffold_97-1491911889:682734..683596TCONS_00073764-exon-scaffold_97-1491911889:682734..683596Clytia hemisphaericaexon
TCONS_00073764-exon-scaffold_97-1510915933:682734..683596TCONS_00073764-exon-scaffold_97-1510915933:682734..683596Clytia hemisphaericaexon
TCONS_00073764-exon-scaffold_97-1575043694:682734..683596TCONS_00073764-exon-scaffold_97-1575043694:682734..683596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:682734..683596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65812	2.59208	1.22843	1.62247	14.119	13.6428	10.4615	10.1857	5.80557	5.54907	4.89142	3.10704	3.82429	2.39792	3.75802	3.10734	4.43883	4.8001	0.518995	0.482747	1.94063	1.84197	8.21025	8.42563	2.62093	4.2624	1.11576	0.555691	5.11787	6.19582
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000253FHA_dom
IPR008984SMAD_FHA_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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