TCONS_00073762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073762
Unique NameTCONS_00073762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073762 ID=TCONS_00073762|Name=TCONS_00073762|organism=Clytia hemisphaerica|type=transcript|length=356bp
GTCGGATCGATATCAGTATGTCAAGGTAAATGGTAAACTATCAAAGGAAG
GTAAAGTACTCAGCGGTGTCCCACAGGGAAGTGTTCTTGGTCCATTACTT
TTTGTGTTATATATCAATGATCTACCTGAGGTTACAAGCTCTGATATGTA
CCTCTTTGCAGACGACACTAAGCTTGTTGAGGAGATAAATAGTGCTGAAG
ATGCCACTCGCTTGCAACATGATATCGATGCAATGGAAAGATGGTCAAAG
GACTGGCTACTCAGATTCCACCCAGATAAATGCCACGTGCTAACacttgg
aaaattttggaacatcaaacaTGCCCATCCATACAACATAGACGGGTTAA
TCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00073762-protein

>TCONS_00073762-protein ID=TCONS_00073762-protein|Name=TCONS_00073762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
SDRYQYVKVNGKLSKEGKVLSGVPQGSVLGPLLFVLYINDLPEVTSSDMY
LFADDTKLVEEINSAEDATRLQHDIDAMERWSKDWLLRFHPDKCHVLTLG
KFWNIKHAHPYNIDGLIL
Run BLAST on NCBI

transcript from alignment at scaffold_97:506959..507314

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073762 ID=TCONS_00073762|Name=TCONS_00073762|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_97:506959..507314 (Clytia hemisphaerica)
CCAGGATTAACCCGTCTATGTTGTATGGATGGGCAtgtttgatgttccaa
aattttccaagtGTTAGCACGTGGCATTTATCTGGGTGGAATCTGAGTAG
CCAGTCCTTTGACCATCTTTCCATTGCATCGATATCATGTTGCAAGCGAG
TGGCATCTTCAGCACTATTTATCTCCTCAACAAGCTTAGTGTCGTCTGCA
AAGAGGTACATATCAGAGCTTGTAACCTCAGGTAGATCATTGATATATAA
CACAAAAAGTAATGGACCAAGAACACTTCCCTGTGGGACACCGCTGAGTA
CTTTACCTTCCTTTGATAGTTTACCATTTACCTTGACATACTGATATCGA
TCCGAC

Coding sequence (CDS) from alignment at scaffold_97:506959..507314

>TCONS_00073762 ID=TCONS_00073762|Name=TCONS_00073762|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_97:506959..507314 (Clytia hemisphaerica)
CAGGATTAACCCGTCTATGTTGTATGGATGGGCAtgtttgatgttccaaa
attttccaagtGTTAGCACGTGGCATTTATCTGGGTGGAATCTGAGTAGC
CAGTCCTTTGACCATCTTTCCATTGCATCGATATCATGTTGCAAGCGAGT
GGCATCTTCAGCACTATTTATCTCCTCAACAAGCTTAGTGTCGTCTGCAA
AGAGGTACATATCAGAGCTTGTAACCTCAGGTAGATCATTGATATATAAC
ACAAAAAGTAATGGACCAAGAACACTTCCCTGTGGGACACCGCTGAGTAC
TTTACCTTCCTTTGATAGTTTACCATTTACCTTGACATACTGATATCGAT
CCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045808XLOC_045808Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073762-proteinTCONS_00073762-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073762-exon-scaffold_97-1491911889:506959..507314TCONS_00073762-exon-scaffold_97-1491911889:506959..507314Clytia hemisphaericaexon
TCONS_00073762-exon-scaffold_97-1510915933:506959..507314TCONS_00073762-exon-scaffold_97-1510915933:506959..507314Clytia hemisphaericaexon
TCONS_00073762-exon-scaffold_97-1575043694:506959..507314TCONS_00073762-exon-scaffold_97-1575043694:506959..507314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:506959..507314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61653	1.25603	3.18685	4.47144	0.653073	1.28594	1.74683	3.26648	0.656729	1.17839	1.87917	0.822289	2.57338	0.980887	0.839785	0.93482	1.44253	1.73415	0	0.310864	2.36683	1.36582	1.05625	2.06973	1.44464	2.49211	2.52829	1.82456	1.27421	0.272921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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