TCONS_00073715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073715
Unique NameTCONS_00073715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073715 ID=TCONS_00073715|Name=TCONS_00073715|organism=Clytia hemisphaerica|type=transcript|length=350bp
aatttttttttagatatttggAAATGTTAGAGCAACATAAACCACATTTG
AAATGGCAGAAGGAGAGCAGAGAACATAAAATCGAGTATAAaGAGGATAA
GAAAACACGAACGACGATCTATTATCCATCATTACAGTCAATTGAAGAAC
GAATTCAATTAGCAAACGAACTTGGAACAGGTCTTTCTATATGGGAAATC
GGTCAAGGCTTAGACTTCTTTTATGATTTACTGTAGATTTAGAAATTATT
TTAATCCAATAGGTTTTTTATTGTtacatttcaagaaaatttatttatac
tACATTACTTTATTTGATATGCTTCCATTTTTGAAACCCCCTTTTCCGTT
Run BLAST on NCBI

transcript from alignment at scaffold_97:350159..351940-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073715 ID=TCONS_00073715|Name=TCONS_00073715|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at scaffold_97:350159..351940- (Clytia hemisphaerica)
AATTTTTTTTTAGATATTTGGAAATGTTAGAGCAACATAAACCACATTTG
AAATGGCAGAAGGAGAGCAGAGAACATAAAATCGAGTATAAGTAAGAATG
ATTTTCATTTATAATAAACTCAACGCGTTTAGACCCCGGCTTTAGACATA
TCGAGGGTCGAAACATGGTAGATTCTTAAGGAATGCTCAATACATGTTTT
TTCTTTTATAAGCATAACGTTTATAAGCATATGCAGGCTCAGTTTTTGGT
ACCTAAACAATGGCTCTATTGTTTGAGAACAATAGAATGCTAAGCATAAT
GCGAGCCTGACATAGGGACAGACACTTGCTTATAAAACAAAAAACATGTA
ATATGCTAAAAATAAAGCACTAAAAATTGGTACACTATCGGGTTATCTTG
ACGCTAAGATTATGTAAAGTTTTTGAGCCATTACACAGTTTTGGAGTCAA
AACTGTATCGCGTCTTAAAAAGGTTCTCTTGGTCTGTGTTTTTCGCTTTA
TAATGCTTGGAGCGAGTAGTTTCATATGAATAGCTCTTTTCATAAATTAC
GTCATGAACACCACTTGCCTCGTTTTCAAACAATTACTATGGTGATTATG
TCCCTTGAGACATTAAAATATTCTTTTATGAAAAGAAAATAGTTTAGATA
AAATCCGCTGAGAGTTAATCACAATGACAATAATTTCAAAACGAGGCAAG
TGATGTCCGTGACGTAATTTACGAAAAGGCATATTATAATGTATTCTTGT
GTTTTCTTTTTGAATTTCAGAGAGGATAAGAAAACACGAACGACGATCTA
TTATCCATCATTACAGGTGAGTTATTTAGAAGGTAGTGCATCCAGCTACG
GTGCGCAAGGTTGTGGGTTCAATCCCCAGCCGGGTCATACCAAAGATTCC
CAAAATGGTACTAGATGCCTCTCTCCTTGATGCTCAGCAACTAAAGAGAC
GGATCAAAGGTAAGTGGAGAAATCCACGGAAAGGAGTGGCGCCCTTCTGG
TAGACACCTATACGAAAAGGGAGCCTTCGGGTCGCCCTCGACTGCGGTCG
CAAACTTACTTGCTTATGATTGAGAGAGAGATAGTCCTTCCGATAAACGG
AACAGGCCCTATCCAGGACAGCATACACTAGGATTGGGAAATCACTGCGC
TTACCTGACTCTGCCAACTCGTGCTCGTGACACTTCTTCATTCGGATTAA
CTTTCGAGAGATTAAATTTCGCGAATTTTTGCCATTTTCGCGAAATTAAA
ACTCGCAAAAACGCGTGAAATTCCTGACTCGCGAAATTAAATTCACATTT
TTGGCGGAAAAACCAGTCGAAAGTCACCATTTGTGGCAAAAAAATGGCTA
TTTTTCAGCTGTTTTCAGGCCTATTCGCGAAATTAAATTCACGCGAAATT
TTTCAAAACTCTGACTCTGATCTCAGAAAATTCCGCGATTTTTTTCGCTC
GCGAAATTTAATCCGATTAAAGTATACTCGAACGACTCGGATGACTTTCA
CCATAAAATGAGGACGTTTTCAGACCATCTATTAAAAACATAATATCTGA
ATTCTTTTTACCTTTTCAGTCAATTGAAGAACGAATTCAATTAGCAAACG
AACTTGGAACAGGTCTTTCTATATGGGAAATCGGTCAAGGCTTAGACTTC
TTTTATGATTTACTGTAGATTTAGAAATTATTTTAATCCAATAGGTTTTT
TATTGTTACATTTCAAGAAAATTTATTTATACTACATTACTTTATTTGAT
ATGCTTCCATTTTTGAAACCCCCTTTTCCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045771XLOC_045771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073715-exon-scaffold_97-1575043694:351850..351940TCONS_00073715-exon-scaffold_97-1575043694:351850..351940Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1575043694:351125..351170TCONS_00073715-exon-scaffold_97-1575043694:351125..351170Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1575043694:350159..350371TCONS_00073715-exon-scaffold_97-1575043694:350159..350371Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1510915933:351850..351940TCONS_00073715-exon-scaffold_97-1510915933:351850..351940Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1510915933:351125..351170TCONS_00073715-exon-scaffold_97-1510915933:351125..351170Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1510915933:350159..350371TCONS_00073715-exon-scaffold_97-1510915933:350159..350371Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1491911889:351850..351940TCONS_00073715-exon-scaffold_97-1491911889:351850..351940Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1491911889:351125..351170TCONS_00073715-exon-scaffold_97-1491911889:351125..351170Clytia hemisphaericaexon
TCONS_00073715-exon-scaffold_97-1491911889:350159..350371TCONS_00073715-exon-scaffold_97-1491911889:350159..350371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:350159..351940 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.7293	36.5593	27.6344	31.4955	2.37522	2.14506	8.41076	6.9655	11.0256	8.40431	7.90251	7.87598	5.52226	2.433	7.42951	9.35295	11.8998	10.4545	3.47714	5.8777	7.29826	4.98377	25.0992	20.7205	9.18502	5.06311	9.31537	5.89133	17.8735	14.5113
Blast
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BLAST of TCONS_00073715 vs. Swiss-Prot (Human)
Match: CHID1 (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.404e-23
Identity = 37/74 (50.00%), Postives = 57/74 (77.03%), Query Frame = 3 
Query:   12 RYLEMLEQHKPHLKWQKESREHKIEYKEDKKTRTTIYYPSLQSIEERIQLANELGTGLSIWEIGQGLDFFYDLL 233
            RY++ L+ H+P + W  ++ EH  EYK+ +  R  ++YP+L+S++ R++LA ELG G+SIWE+GQGLD+FYDLL
Sbjct:  320 RYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL 393
The following BLAST results are available for this feature:
BLAST of TCONS_00073715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHID12.404e-2350.00Chitinase domain-containing protein 1 OS=Homo sapi... [more]
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