Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073711 ID=TCONS_00073711|Name=TCONS_00073711|organism=Clytia hemisphaerica|type=transcript|length=945bp
AAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGG
AAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG
GTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGCT
CAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGAA
GCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAACA
ATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAAT
CCTTTACCTTTTTCTGCTGTCTTGAGAAACAATTTATTTAATGATGACTT
CATAGCAAATGACAATTTCATTGATAttcaaaatttcgattttcggccTA
TCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTG
AATGAGACTGGCGTTTATTGGATCCCAGGGCGTGAAGAAAAGACGCCATC
ATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACCCACGTG
ATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGAGTATTT
TTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGAAAAGCC
GAGAAATATGATCGACTTACCGAgtcaattaaaaaataatttggttTATT
ATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACGGTTGCT
AGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTGGACCAA
AACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACTGACCTA
AAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCagtaatttctt
ttcaaattttgtgagtatttttgtgctttaTCCAAAGAAACTCGc Run BLAST on NCBI transcript from alignment at scaffold_97:294416..299186- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073711 ID=TCONS_00073711|Name=TCONS_00073711|organism=Clytia hemisphaerica|type=transcript|length=4771bp|location=Sequence derived from alignment at scaffold_97:294416..299186- (Clytia hemisphaerica)
AAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGG
AAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG
GTGAGGCATTTGACTAGACTCGTAGACTCGGGGTCATTCTTTGTATTCTT
TCGCGAACATTGCATAGCTGAACACTTAACCGTTCATATTTTTAAGTGTA
TTTTCTCAAGCAACCTTGCTTCCCTCAAATCAAATACTTCAGACAGTGAA
GGCAAAAGCCGGAATCTGTGTCACTCCAAGACTCTGGAAAAGTTGAGGTG
GGCAAGAGGAGCAAGGGGAACTGGAAATGGGTCAAGAGGCAAGGAATAAT
TGGAATAGAAAGATGGGGAACAGCTCAGCAGGGCAAATTGGGTATGTAAA
TGGAAGGGGACGCTGTATACGTCCTAATTCAATTGTCTATCTCCTTTTTG
TTATAGGTGATTACCACAATGTGACAAACAACCTTGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGATGGAGAACGTTCTTATATTTTAGCTATAACACACACAAACTTTTCTA
CTCAATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGTATAT
ACAGTATGTTTTTTTTCTTTTCTTTTTTAAATCCCATTGGGACTTCAAAA
CCAGTTTTTGCCAAACTGTCAAAGCTGGGGAAATTTCAATAGAGTATTTA
AGTTGGTCAAGACAATTTGGACTAATTACCCTTAGAAAGTCAATTTTTTA
AGTCCTAAGGGACCATATAATAAAAAAATAAAATAAAAGCCCATAAACCC
GAACATAGCTCATAGCACATAGCTTTTTTTAAGGGCGAACCAAGACCTCG
CCCGGACTTAACTGGGACGGAGTAGTTCTATTTAGTTTTTATATGTAAAA
TACCTCCTTGCACGATTAGAACTTTTGTAAAACTTCTTTTCCTGAATTTA
GGTACGAATTCAATTGTGACGATGAACCGCATCACCAGGCAATGTTTTGG
TGTCATTCAAAATGATGGTGCAGGTATACAACTTCAACNGCATCCATGAA
AGCGTCAAATAATGCCTATTAAACCTTTAAATTATAGCTTGGATGCGGTG
CTATAGAGAGCGGCACTAATCGGAGGGCGGTACTAAACATACGATATTCT
TGAAATGTTACCGTACTAACGGCTACTGTATCTATCAAAAAGTCTGCTCA
ACAATCAATTGCTGTTCTGAACACTGATTGGTTTATTTGATTGTTGAACG
AATTTTTGACAGCCCGGTTTAAGTACAGTTAATCAGTCTCGATTTTCCAT
TTAAAGGTATTCAACTCCCCTAAATACGGGATTCGATTTGATGGTCAGTT
ACCGAATATCGGAACAAACGGAAATATGTCTTACAATGTGGTTTGGCGGT
GTAACGGAATGATGGTCAAAGGTGAGGCATTTGACTAGACTCGTAGACTC
GGGGTCATTCTTTGTATTCTTTCGCGAACATTGCATAGCTGAACACTTAA
CCGTTCATATTTTTAAGTGTATTTTCTCAAGCAACCTTGCTTCCCTCAAA
TCAAATACTTCAGACAGTGAAGGCAAAAGCCGGAATCTGTGTCACTCCAA
GACTCTGGAAAAGTTGAGGTGGGCAAGAGGAGCAAGGGGAACTGGAAATG
GGTCAAGAGGCAAGGAATAATTGGAATAGAAAGATGGGGAACAGCTCANA
GCAAGGGGAACTGGAAAAGGGTCAAGAGGCAAGGAATAATTGGAATAGAA
AGATGGGGAACAGCTCAGCAGGGCAAATTGGGTATGTAAATGGAAGGGGA
CGCTGTATACGTCCTAATTCAATTGTCTATCTCCTTTTTGTTATAGGTGA
TTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGCTCAAG
ATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGAAGCTC
CGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAACAATGC
TGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAATCCTT
TACCTTTTTCTGCTGTCTTGAGTGAGTGCAAATTATTACTATTTATTAAA
TCAAAAAATTTAAACTGAAAACTACAAGAAAAATGTTCTGTTCAGGGGCT
TGCAATACTGTTGTACCCCAGTCATGTACTTATGTCATTATATTGTCACA
TTAATTCGAACTGCAGCGGGGGTCCAATTTGTTCGAATTACAGAGTGATT
TCAATTATAAAAACTATTTTAGAAGGGTTTTCTTTACCGTTCACTGCTGT
CTTGAGTAACTCCCGCTAATCTCAAACTCGAACGGGAAGTCTTTTTTGGT
TCAAATTATAGAAGCGATAGTCCATTTGAGACTTTACGAGGCATTTCTAA
CAGAAAAAAAACAAATTAAAAAAGGGTCACTTGCCATGAAACCACTGACT
TTTGTATATCCCTGGACCAAGCTATATCCGCCATCTTTGATCGCAACTGT
TTTTAATTTGTACCCGTAAAGAAGCAATTGCAATGTTAAAAATTAATGTC
TAACGGCGCTACATCATCAAAAGTTTTCGAGGGAAAGTAGATATAGCGCT
CTCGATGCATTTACACCGCTATTGAGTAGTGCCACCATTAGGGTACCACT
TTTCAAAAAACTCAAAGATTTAGTTTGGCCGAGATTGGGAAACTTGGTCC
AGGGTATATAAAGGTCAGTACATAAAACACCTAGCCCAAAGCGATCAAGA
ATCTTGTAGGGCGTGAAGGCCCAGCGACTCAATAAAGTAACAAGGCGCCG
TTTCTTCAAAACTGAACTTGAATAGACAAAGTGCTGCTTATTCAAAAACG
GACATACAGTACATGCGACATGAAAGGCCAAATGCTGGGCCAACTATTAA
TCAAAGAAAATTAATTGAGTGTTTGTTTAATATTTAGGAAACAATTTATT
TAATGATGACTTCATAGCAAATGACAATTTCATTGATATTCAAAATTTCG
ATTTTCGGCCTATCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCT
TACAATGATGTGAATGAGACTGGCGTTTATTGGATCCCAGGTGAGAAAAA
GAACTTTTCTTGTACCAATAGTAAAGAGGGCACATTGAGTTGCGAACACC
GAAATAACGGCGCTTTCTTTCTTTTCTTTCTTCTTCTTTACCTTCCACAC
CGCTTAAAAGAATTTCTAAAAGTCTGACATTTTCACCGCGTGAGAAACCG
TTACTTTTTTCCTCAAACACCAAAAAACCGACGAAAAAGGGAAATAATAC
CCATAATTATATGGTTGATTATATTTAGCTTAGATTTGTAAAGGACGAGC
GGGGTGATAAATCCGTAATAGCCCCGCTTTTTTGTAATCGCCCTGATGTA
AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTACGAAATTTTTAA
GCCAATCAAAATAAGAGTGTCAGTCGAATGTTTTTTTATAGTTTCGAATG
TTTTTATAAGTTTCGAAAAGAATAGCGATTGAGTGTTCTAAACCATGTTA
TTACTAGTACTAATACCGTCACACTTCAAACATGCATTCTCTGCCCTAAG
GAAGCTAGCACACAAAATTAGCGTTTTTTTGCGGGAACTAAAATTTCGCG
ATGGATACCCTCTTTTTTCAGTTTCTTTGTAGTTTTTACAGATTTATGAT
TCGTAAAAAAATTTTGAGTAATTTTTCAACAACCAGTTGCCTATTAAACG
GAGAGGGTCCCTTTGGTGATTTAATTTTATTGTTTGTGAGAAAAGAGTTT
GCGAATTTCCTTGGTGGACCGTAATATACGCCTGAATATTATTTTCTTAC
GAAGACCAGGAATCCATTTGTTCGAGTTAAGAAAAATTCAAGTTATGGAG
TAAGGTTCATAAGGCATTGTTACCTGAAGGGACGAGAGAACTTGTTCGAG
TTAAGGAGACCTTACTGTATTACAATACATATGAACATTCAAAAACGTTC
TGTTTCAGCCAGGAAATCCCACATGATAAATCAGCATTACGTTTTACATT
ATAGGGCGTGAAGAAAAGACGCCATCATTCCCTATCCCACCACACAAATC
ATTGATCGATATTCGAAACCCACGTGATTCCCTTATATGGAAGAACGCGT
ATGGTTGTCATAAACACCGAGTATTTTTCGGTGAAAGTCGGGAAACGATG
ATTAAACTCGGTGATGTTGAAAAGCCGAGAAATATGATCGACTTACCGAG
TCAATTAAAAAATAATTTGGTTTATTATTGGAAAGTAGAAACCTTTTGTA
ATGACAATGGAGATTTGACGGTTGCTAGGAAACGAGAATCTGTTAATGGA
GACAGAATTAACTACGATTGGACCAAAACCAGGACCATTGAGAGTCAGAT
ATGGACATTCAAAACGAACTGACCTAAAATCCTAAAATTGATATCATTCT
TCAGTAATATTCTTCAGTAATTTCTTTTCAAATTTTGTGAGTATTTTTGT
GCTTTATCCAAAGAAACTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073711-exon-scaffold_97-1575043694:299087..299186 | TCONS_00073711-exon-scaffold_97-1575043694:299087..299186 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1575043694:297016..297240 | TCONS_00073711-exon-scaffold_97-1575043694:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1575043694:295997..296149 | TCONS_00073711-exon-scaffold_97-1575043694:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1575043694:294416..294882 | TCONS_00073711-exon-scaffold_97-1575043694:294416..294882 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1510915933:299087..299186 | TCONS_00073711-exon-scaffold_97-1510915933:299087..299186 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1510915933:297016..297240 | TCONS_00073711-exon-scaffold_97-1510915933:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1510915933:295997..296149 | TCONS_00073711-exon-scaffold_97-1510915933:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1510915933:294416..294882 | TCONS_00073711-exon-scaffold_97-1510915933:294416..294882 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1491911889:299087..299186 | TCONS_00073711-exon-scaffold_97-1491911889:299087..299186 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1491911889:297016..297240 | TCONS_00073711-exon-scaffold_97-1491911889:297016..297240 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1491911889:295997..296149 | TCONS_00073711-exon-scaffold_97-1491911889:295997..296149 | Clytia hemisphaerica | exon |
| TCONS_00073711-exon-scaffold_97-1491911889:294416..294882 | TCONS_00073711-exon-scaffold_97-1491911889:294416..294882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:294416..299186 - |
Blast
The following BLAST results are available for this feature:
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