Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073711
Unique NameTCONS_00073711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073711 ID=TCONS_00073711|Name=TCONS_00073711|organism=Clytia hemisphaerica|type=transcript|length=945bp
AAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGG
AAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG
GTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGCT
CAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGAA
GCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAACA
ATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAAT
CCTTTACCTTTTTCTGCTGTCTTGAGAAACAATTTATTTAATGATGACTT
CATAGCAAATGACAATTTCATTGATAttcaaaatttcgattttcggccTA
TCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTG
AATGAGACTGGCGTTTATTGGATCCCAGGGCGTGAAGAAAAGACGCCATC
ATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACCCACGTG
ATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGAGTATTT
TTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGAAAAGCC
GAGAAATATGATCGACTTACCGAgtcaattaaaaaataatttggttTATT
ATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACGGTTGCT
AGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTGGACCAA
AACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACTGACCTA
AAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCagtaatttctt
ttcaaattttgtgagtatttttgtgctttaTCCAAAGAAACTCGc
Run BLAST on NCBI

transcript from alignment at scaffold_97:294416..299186-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073711 ID=TCONS_00073711|Name=TCONS_00073711|organism=Clytia hemisphaerica|type=transcript|length=4771bp|location=Sequence derived from alignment at scaffold_97:294416..299186- (Clytia hemisphaerica)
AAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGG AAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG GTGAGGCATTTGACTAGACTCGTAGACTCGGGGTCATTCTTTGTATTCTT TCGCGAACATTGCATAGCTGAACACTTAACCGTTCATATTTTTAAGTGTA TTTTCTCAAGCAACCTTGCTTCCCTCAAATCAAATACTTCAGACAGTGAA GGCAAAAGCCGGAATCTGTGTCACTCCAAGACTCTGGAAAAGTTGAGGTG GGCAAGAGGAGCAAGGGGAACTGGAAATGGGTCAAGAGGCAAGGAATAAT TGGAATAGAAAGATGGGGAACAGCTCAGCAGGGCAAATTGGGTATGTAAA TGGAAGGGGACGCTGTATACGTCCTAATTCAATTGTCTATCTCCTTTTTG TTATAGGTGATTACCACAATGTGACAAACAACCTTGCNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TGATGGAGAACGTTCTTATATTTTAGCTATAACACACACAAACTTTTCTA CTCAATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGTATAT ACAGTATGTTTTTTTTCTTTTCTTTTTTAAATCCCATTGGGACTTCAAAA CCAGTTTTTGCCAAACTGTCAAAGCTGGGGAAATTTCAATAGAGTATTTA AGTTGGTCAAGACAATTTGGACTAATTACCCTTAGAAAGTCAATTTTTTA AGTCCTAAGGGACCATATAATAAAAAAATAAAATAAAAGCCCATAAACCC GAACATAGCTCATAGCACATAGCTTTTTTTAAGGGCGAACCAAGACCTCG CCCGGACTTAACTGGGACGGAGTAGTTCTATTTAGTTTTTATATGTAAAA TACCTCCTTGCACGATTAGAACTTTTGTAAAACTTCTTTTCCTGAATTTA GGTACGAATTCAATTGTGACGATGAACCGCATCACCAGGCAATGTTTTGG TGTCATTCAAAATGATGGTGCAGGTATACAACTTCAACNGCATCCATGAA AGCGTCAAATAATGCCTATTAAACCTTTAAATTATAGCTTGGATGCGGTG CTATAGAGAGCGGCACTAATCGGAGGGCGGTACTAAACATACGATATTCT TGAAATGTTACCGTACTAACGGCTACTGTATCTATCAAAAAGTCTGCTCA ACAATCAATTGCTGTTCTGAACACTGATTGGTTTATTTGATTGTTGAACG AATTTTTGACAGCCCGGTTTAAGTACAGTTAATCAGTCTCGATTTTCCAT TTAAAGGTATTCAACTCCCCTAAATACGGGATTCGATTTGATGGTCAGTT ACCGAATATCGGAACAAACGGAAATATGTCTTACAATGTGGTTTGGCGGT GTAACGGAATGATGGTCAAAGGTGAGGCATTTGACTAGACTCGTAGACTC GGGGTCATTCTTTGTATTCTTTCGCGAACATTGCATAGCTGAACACTTAA CCGTTCATATTTTTAAGTGTATTTTCTCAAGCAACCTTGCTTCCCTCAAA TCAAATACTTCAGACAGTGAAGGCAAAAGCCGGAATCTGTGTCACTCCAA GACTCTGGAAAAGTTGAGGTGGGCAAGAGGAGCAAGGGGAACTGGAAATG GGTCAAGAGGCAAGGAATAATTGGAATAGAAAGATGGGGAACAGCTCANA GCAAGGGGAACTGGAAAAGGGTCAAGAGGCAAGGAATAATTGGAATAGAA AGATGGGGAACAGCTCAGCAGGGCAAATTGGGTATGTAAATGGAAGGGGA CGCTGTATACGTCCTAATTCAATTGTCTATCTCCTTTTTGTTATAGGTGA TTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGCTCAAG ATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGAAGCTC CGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAACAATGC TGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAATCCTT TACCTTTTTCTGCTGTCTTGAGTGAGTGCAAATTATTACTATTTATTAAA TCAAAAAATTTAAACTGAAAACTACAAGAAAAATGTTCTGTTCAGGGGCT TGCAATACTGTTGTACCCCAGTCATGTACTTATGTCATTATATTGTCACA TTAATTCGAACTGCAGCGGGGGTCCAATTTGTTCGAATTACAGAGTGATT TCAATTATAAAAACTATTTTAGAAGGGTTTTCTTTACCGTTCACTGCTGT CTTGAGTAACTCCCGCTAATCTCAAACTCGAACGGGAAGTCTTTTTTGGT TCAAATTATAGAAGCGATAGTCCATTTGAGACTTTACGAGGCATTTCTAA CAGAAAAAAAACAAATTAAAAAAGGGTCACTTGCCATGAAACCACTGACT TTTGTATATCCCTGGACCAAGCTATATCCGCCATCTTTGATCGCAACTGT TTTTAATTTGTACCCGTAAAGAAGCAATTGCAATGTTAAAAATTAATGTC TAACGGCGCTACATCATCAAAAGTTTTCGAGGGAAAGTAGATATAGCGCT CTCGATGCATTTACACCGCTATTGAGTAGTGCCACCATTAGGGTACCACT TTTCAAAAAACTCAAAGATTTAGTTTGGCCGAGATTGGGAAACTTGGTCC AGGGTATATAAAGGTCAGTACATAAAACACCTAGCCCAAAGCGATCAAGA ATCTTGTAGGGCGTGAAGGCCCAGCGACTCAATAAAGTAACAAGGCGCCG TTTCTTCAAAACTGAACTTGAATAGACAAAGTGCTGCTTATTCAAAAACG GACATACAGTACATGCGACATGAAAGGCCAAATGCTGGGCCAACTATTAA TCAAAGAAAATTAATTGAGTGTTTGTTTAATATTTAGGAAACAATTTATT TAATGATGACTTCATAGCAAATGACAATTTCATTGATATTCAAAATTTCG ATTTTCGGCCTATCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCT TACAATGATGTGAATGAGACTGGCGTTTATTGGATCCCAGGTGAGAAAAA GAACTTTTCTTGTACCAATAGTAAAGAGGGCACATTGAGTTGCGAACACC GAAATAACGGCGCTTTCTTTCTTTTCTTTCTTCTTCTTTACCTTCCACAC CGCTTAAAAGAATTTCTAAAAGTCTGACATTTTCACCGCGTGAGAAACCG TTACTTTTTTCCTCAAACACCAAAAAACCGACGAAAAAGGGAAATAATAC CCATAATTATATGGTTGATTATATTTAGCTTAGATTTGTAAAGGACGAGC GGGGTGATAAATCCGTAATAGCCCCGCTTTTTTGTAATCGCCCTGATGTA AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTACGAAATTTTTAA GCCAATCAAAATAAGAGTGTCAGTCGAATGTTTTTTTATAGTTTCGAATG TTTTTATAAGTTTCGAAAAGAATAGCGATTGAGTGTTCTAAACCATGTTA TTACTAGTACTAATACCGTCACACTTCAAACATGCATTCTCTGCCCTAAG GAAGCTAGCACACAAAATTAGCGTTTTTTTGCGGGAACTAAAATTTCGCG ATGGATACCCTCTTTTTTCAGTTTCTTTGTAGTTTTTACAGATTTATGAT TCGTAAAAAAATTTTGAGTAATTTTTCAACAACCAGTTGCCTATTAAACG GAGAGGGTCCCTTTGGTGATTTAATTTTATTGTTTGTGAGAAAAGAGTTT GCGAATTTCCTTGGTGGACCGTAATATACGCCTGAATATTATTTTCTTAC GAAGACCAGGAATCCATTTGTTCGAGTTAAGAAAAATTCAAGTTATGGAG TAAGGTTCATAAGGCATTGTTACCTGAAGGGACGAGAGAACTTGTTCGAG TTAAGGAGACCTTACTGTATTACAATACATATGAACATTCAAAAACGTTC TGTTTCAGCCAGGAAATCCCACATGATAAATCAGCATTACGTTTTACATT ATAGGGCGTGAAGAAAAGACGCCATCATTCCCTATCCCACCACACAAATC ATTGATCGATATTCGAAACCCACGTGATTCCCTTATATGGAAGAACGCGT ATGGTTGTCATAAACACCGAGTATTTTTCGGTGAAAGTCGGGAAACGATG ATTAAACTCGGTGATGTTGAAAAGCCGAGAAATATGATCGACTTACCGAG TCAATTAAAAAATAATTTGGTTTATTATTGGAAAGTAGAAACCTTTTGTA ATGACAATGGAGATTTGACGGTTGCTAGGAAACGAGAATCTGTTAATGGA GACAGAATTAACTACGATTGGACCAAAACCAGGACCATTGAGAGTCAGAT ATGGACATTCAAAACGAACTGACCTAAAATCCTAAAATTGATATCATTCT TCAGTAATATTCTTCAGTAATTTCTTTTCAAATTTTGTGAGTATTTTTGT GCTTTATCCAAAGAAACTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045767XLOC_045767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073711-exon-scaffold_97-1575043694:299087..299186TCONS_00073711-exon-scaffold_97-1575043694:299087..299186Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1575043694:297016..297240TCONS_00073711-exon-scaffold_97-1575043694:297016..297240Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1575043694:295997..296149TCONS_00073711-exon-scaffold_97-1575043694:295997..296149Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1575043694:294416..294882TCONS_00073711-exon-scaffold_97-1575043694:294416..294882Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1510915933:299087..299186TCONS_00073711-exon-scaffold_97-1510915933:299087..299186Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1510915933:297016..297240TCONS_00073711-exon-scaffold_97-1510915933:297016..297240Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1510915933:295997..296149TCONS_00073711-exon-scaffold_97-1510915933:295997..296149Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1510915933:294416..294882TCONS_00073711-exon-scaffold_97-1510915933:294416..294882Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1491911889:299087..299186TCONS_00073711-exon-scaffold_97-1491911889:299087..299186Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1491911889:297016..297240TCONS_00073711-exon-scaffold_97-1491911889:297016..297240Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1491911889:295997..296149TCONS_00073711-exon-scaffold_97-1491911889:295997..296149Clytia hemisphaericaexon
TCONS_00073711-exon-scaffold_97-1491911889:294416..294882TCONS_00073711-exon-scaffold_97-1491911889:294416..294882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:294416..299186 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0398525 0.0472361 0 0 0.0435955 0 0 0 0 0 0.0271895 3.51124e-08 0 1.84222 0.949492 7.34291 7.3906 5.95238 4.10647 5.54107 4.92275 4.60795 5.34123 1.19431 1.65773 2.40216 1.92314 14.3577 12.0074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top