TCONS_00073707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073707
Unique NameTCONS_00073707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073707 ID=TCONS_00073707|Name=TCONS_00073707|organism=Clytia hemisphaerica|type=transcript|length=1774bp
TGGAGATTTGATTTGGATTGAGATTGTCAGGAGAAAATGAAGGCTGAGTC
ATACCTTTgcatcagtgcctttttcacattttggggTGACCGTATGTGGC
AATTTGCTACTGGCATCTTCCTAATTCAACTCACACCAGAATCGTTACGC
TTGGCAGCTACTTATGGGTTATGTTTATCTCTGATTGCCATAATTTTCTC
ACCCATGATTGGAGACTGGGTTGATAGAACAGCAAGATTAGAAGTCATTC
AGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTGTATGTGCAATAACA
ATTTATCTTTGTATGAGATATAAAACGGGTAATCTGCAACTTTTTCTTCA
AGCACTTATAATCTTGTTAGGATCTGCAGCAAATTTAGCCTCTCAGGGAC
AAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGGTTTGTAAACAAGAT
AAAGATTTACTTGCTCATACCAATGCCTTGCTAAGAAGAATAGATCTTAC
TGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCTAATGAGTGGCATCT
CAACATTGGCTGGTATCATATTTATTTGCGTTTGGAATGTTGTAtccttg
ttttttgaatatggATTCTTATTAAAAGTCTATAATTTGACTCCAGATCT
ATCAGTGAAGAATAAcacaaaaaagccaaaaaataacCCAGATGATGACA
ACCACGCTGCCAAAACAGAAGATGCTAAATCAAATCAAGTTGAAGAGATC
CAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGCAGCTGGAACCTTAT
CAAACGTGTTCAACTTGTTATCTCAGGCTGGCATATTTATTATCGTCAAA
CTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGTATCTTACTGTCATT
GGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAACTTGGCTTAAGTGA
GCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTTGTTTGGTGTCTTTG
GCACCCTACTGTTTCCTAAAATACGCAACCGGCTTGGATTAGTGAAATCT
GGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTTGTGTTTTGTGTTGC
ATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTACAATGGTAAACAAT
TTATAATATCTGCATTACCAGCAACCAATATGACTGCCCTCAATACTACA
AGTGGTAACCATACAGGCCCAACTTTGCAGCCAACAGTTACACCGAAACC
ACAACGCATCCTAACATCGATTATCTTTCTCATGACTGGTATTATATTAT
CGCGTACTGGTTTATGGTTATCAGACCTCACCATCACTCAACTTCAACAA
GAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGTGGTGTACAATACGC
TTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCTCACCATCTCCTTAC
CAAAACCAGATCAATTtggtattttgattttgatatcatTTTGTGCAATT
GGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCCAGATTTCATTCTTC
TGTCAAGCAGGATGCAAATAAATACAAAACAATGGAGGATTGAggtacta
ctttaggcgtacaagcttttgcgagcagaaacaTACACAAGGtcgaaatt
tacgacatttactttcgcgaatttgaggaaaaaatgtttttcgcaaGCAT
GAATATTCGCAAATGATTGgataaaatgagaattttcaaatgaaaattgt
cTTAAAGTGAAAAGTATACCTTAA
Run BLAST on NCBI

protein sequence of TCONS_00073707-protein

>TCONS_00073707-protein ID=TCONS_00073707-protein|Name=TCONS_00073707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MKAESYLCISAFFTFWGDRMWQFATGIFLIQLTPESLRLAATYGLCLSLI
AIIFSPMIGDWVDRTARLEVIQLLLLIQNSLVVVCAITIYLCMRYKTGNL
QLFLQALIILLGSAANLASQGQKIAIGKDWIVVVCKQDKDLLAHTNALLR
RIDLTVAILAPLVVGFLMSGISTLAGIIFICVWNVVSLFFEYGFLLKVYN
LTPDLSVKNNTKKPKNNPDDDNHAAKTEDAKSNQVEEIQVAVTNANKETS
SWNLIKRVQLVISGWHIYYRQTVFLAGCSLSMLYLTVIGFSAITTGFAYE
LGLSELYVSICMGLGSLFGVFGTLLFPKIRNRLGLVKSGIVGFLLQLSML
VFCVASIWMPGSPSNLYNGKQFIISALPATNMTALNTTSGNHTGPTLQPT
VTPKPQRILTSIIFLMTGIILSRTGLWLSDLTITQLQQEYVSESERGIVG
GVQYASNCLLDLVHFLLTISLPKPDQFGILILISFCAIGCAGFIYLVFVS
RFHSSVKQDANKYKTMED
Run BLAST on NCBI

transcript from alignment at scaffold_97:233690..246141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073707 ID=TCONS_00073707|Name=TCONS_00073707|organism=Clytia hemisphaerica|type=transcript|length=12452bp|location=Sequence derived from alignment at scaffold_97:233690..246141- (Clytia hemisphaerica)
TGGAGATTTGATTTGGATTGAGATTGTCAGGGTAGGTATTATTTACAGTC
GCGTTTTATCGTAGCATACTAGGACATAACATCATTATGATATCTTTTTA
ACATTCAATTCACGTACAAAAGTTTCCAGAGGCTCCTCAACAATGGAAAA
TGTCTCCTCAACAAATTTGTTTTCTTTTACTCTCGGGTACCTAATAGCCG
TCCCCCCCGCTAATTAATTTTTCGAAGAAAAACAGAAAAACAATGATAAA
ACCATGCATAATTATTACAATATGCATGATACAGTAATTATACATGGCTC
TATCATTGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGTCCTC
TTTGAAAAAAGGTCTATATCGACACCCCTCTTCTTATTTATTTTCGACAC
CCTTCTCCCGCCCCGGTCGAAATTGCTTAGGGATTTCAAGGGGCTCAGAA
TTCTCTAATTCGGGCAAAGGCATGGTTTAACGGGCAATCCATTTTAACGG
AATCTTCTTCTACGATAAATTTTGAGTAAAACTGCCCTAGGCTTTTGAAA
TTCAACAGAGCTTTCGAAAGGAATTGCGTGTCAAAAATATAAAAAATTTT
AAAGCGTGCAATTGCACGCTTATCGCGAAAGCTATCACCTGTCAATCTTG
CTTAACGCTTACCGCCCATTTCAGAACAATTTCGATATACACGCTTAAAA
ATTCTGCCATCTTGATAACCGTGCAATTGAAAGCTTTATGACGACAGAAT
AATATGACCAAGTGGTGTTTAAATATGTTATTCTTTATATTTTATTAATT
GACCCTGACTCTAAAGATAAGAAATATACGAAATATATTATGACAACCAT
TATACAAAATTAATGTAAATATAACTTAGGAAAATTTAAAATTATTATTA
ATACGATGCAATGATAAATTTTATAAACTCTAGCATAACAAAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCTCTGCGGAATGGTTCCTTCTTCCGGGTGAGTGGGTTCATCAT
TTGGGGGAAGGGGTTGTGGGGCTGTTTGAGGGAAAACTAGTGGGGGAGTT
TGCACTGGGGGTGCTTCAGGAAAGGTAGTCTCCCCATGATGCTCCTCCTC
TATTAACTGCTTTGCTGCTTCTTCTAATTCCTGATTGCTCTGAGTGGTTT
TGCGTCCTTCCTGTTGTGGTGTGGTGTCAATGAAGTATTGGCATTTTTTG
ACATCATCTAGGTGCCTTAGTAGGGTTTTCGTTGAGAATAAATCTCTTAT
GAGAACACTTTTCATTTCTGCATTTATTTCCTGCATCTGATAAGGAGAAG
GTAAGAATATTGGACCGAATTTAGATCTCCTTGTATAATTTCGAACTAAT
ACCAAGTCCCCTTGCGTGATATCAGAGGATTTTCGGTATTTTGAGGCATT
GATAACCTCTTCATGTTGAATTTTCTTTTCTTTGTCTAGTGCCCGTGCTT
TTTTGATGTCATTTTCAGTCAAGGCCTTTCTTGGAAATTTGTCTTTCAGC
CCATCCCTGAAAATCATGCTTGCAGGCGGCACACCCATTGCTGGGTGAGG
GGTCTGTCGGTATGTTTTGAGCGTTTCTTGTAAGATTTCTGCTTCATTCG
TTTTTAAGTGCTGATTTATCTTCATTGCTTTTCCCACTGTTTTCATGAAT
GTCTCGGCTGGGTTTTGACTAGGAAAATGAGGGGATGAGAACCTTGTGGC
AACACCATGGATTTTACAAGAAAAAGTATTTGATGATGATTCTAACCCTA
AAAAGTTTTACTCATACATAAAAAGCAAACGTCAAGACAGCATTTCAATA
TCAGCACTAAAGGACAACAAGGGGGTCTTTATTATTGAAGATTCAGGAAA
AGCTAATGTCCTCAATCAGCAATACTGTAGTGTATTCTCAGTACCCAACA
ATAACAACCCAAAAATTGAAACACCAGAGATCAAAGATACAATGCGCGAC
ATAACGATTTCTTCTAATGGCATCAAATCCCTTCTAAATAAACTTCAACC
AAATAAAGCCCCTGGTCCAGACAACATTTCTTCACGATTCATGAAAGAGT
TTGCTGAGGAACTTACACCTGCTTTAGAACTCAAAAACGAAACGAAAAAG
GAGAACTTCCAAAAGACTGGCTTCATGCCCACGTATCACCAATCTACAAA
GGTGGAAACAAAGACCGCTGCTCGCCAGAGAACTACCGACCAGTCTCACT
AACGAGCATTTCATGTAAAACATTAGAACACATTATATATAGCATCATTA
AACATCTTAACAAACACAATGCCATCACTGAGGTCCAACACGGTTTTAGA
GAGAAAAAGTCATGCGAATCGCAACTGCTTATCGCTGTCAATGATTTTGC
CAAAGCTCTCAACAACGGGGATCAGATGGACACCATATTGCTAGATTTCA
GCAAAGCTTTTGACAAAGTTGATCATCGAAAACTTTGCCTCAAACTCGCC
CACTACGGTATCAAGGGTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGTGCCAAGTCTTAGCACCTTCTCCTAGAACAATCTTTGT
GCCATTAATTCATTCATTCCTGCTTAGCATCTACTAATCTCTTGCATTAT
TTCTGAGGTTTAGTCAATACTAGGAAGGAGTTTCATTTTATTTTATTTTG
TATATCAATAGAAATTTTTCTTATTAAGTACTATAGCCTTAGTCTTAGCC
TTAGTTAACTTTGTTTAACTCTTGCTCTAGTATTTATATTCTTTCCCTTA
ATTTTAATAAAACTTGTACATTATAACACATAGTTCGCANTGGAGCAAGT
CCAACGAAAAGCTGCGCGTTTCGTCTACTCCAACTGGTCCTGGAAATCCA
GCCCCACAACTATGATCAACGATCTTGGCTGGAAATCCCTTGAATTCGGT
CGTAAGAAAAACAATTTACTCATGCTTCACAAAATTGTTAATGAAAAGAT
TTCCCTACCAAAAGACTTCTTGCANATTCGATTCAAAATGATTCTATTTT
TTTCGCAATGCAGTGTGTTCTATTTTCTTTTGTAGGATTTTAAAATTTTG
AGGGGGGTAGCATCAAAGTTTAAAAGGGGGAAGAACCTAGGGTAGGGGGA
GTAGCTCTAGGGTAGGGGGGGTAGTGACCCCCTTCCGAACTATGTAAAAC
AATAATATTTTTTTTAAACTTTAAATTTTATATGTGGCGAATATGGGCTC
ACGCCTAATGCTACTTAATTAAATAGATAGATAGATAGTAAACTCCTCCA
TTTTTCTGCTGTTGAAAGGAGGACCATTGTCAGATATTTGATTTTCAGGA
TATCCATATTCATCATAGATCTCCGTTAGTGCAGGGATAACTTTATCAGC
TTTAGTTGAGGCTACGAGCTTTGCTGCTGGGTATCTTGATCCCAGATCTT
GAACAACAACAATATGCTTGGATGATGGCATGGGACCAAAGAGGTCTACG
GCCACTGTGTCCCAAGAGTTTTCAGGTACCCTGTGACTGGTTATAGGTTC
CTTTGTCTTTTTATCAACAAACAATGCGCAATCACTGCAAGAACTGACAA
AACTTTTCACCTTATCGTACATTCCATGGAAGAAAAAATGGAACCTAAGT
CTCCTTTCAATTCCACTTTTTCCTGGGGTGAGATCCCCTGTGTGCTAGTT
CAATAGCTAGTTTGTGTAGTGATTCTGGAAGAACAATTCTATCATCCTTG
AGTATTATTCCGTTCGCCATAGCGGTTAGTTCCGACATAACAGGTCCAAA
TCTTTTAACCTCTTTGGAGACATTCTTAGGGATTGATTGATAGCCCTTCC
AGAGATATTTTTGAATGTGACTGAGTGTTTTATCATCAGCGGTTTCCTGA
GCGATTCTCGCTAGTGAAATGTGATCAACGACTTGTGTCATATGAAGTGC
GTATAGAAGATTATTGAGGTCATTGCATTCTTCTCTCTGGCCAATTGGAA
GACTGGAAAGTTTTCTCCCATGACGACTCATGTAGTCTACTTGATTAAGA
GACCCTTTCTGGTATTCAACAATGAACGGTATGTCTTGATGATTCAATTT
GATTCGCTTTGTTCTAATGGAACCAGAACACTTTCCATTGAATATGTGTA
CCAAGGGCTTGTGATCAGTGATCACCTTGATAAGGGCAGGCAAACCTACA
ACATATTCACGGAATCGTCTGAGTCCAAAGTCAAGGCTAGCAGCTTCTAA
ATCCAATTGAGGACAGTGTTTCTCAGAATCATTGGTTGTCCTTGAGGCTA
GAGCAACTGGTTTTGCTTCTTCTAAAGACGGACCTTGTGCTAAAATTGCG
CCTAGCCCCGTCTTGTGACCATCAACAACAATAAACGTTCTAGCATTTGG
GTCAAAATAACGCAGGAGTACGTCCTTACGGAATGCTTCTATAAGGGAGT
AGAATGCATCATTGTGTTTCTTTTGCCATTTAAATCTTACCCCTTTCTTT
ATAAGCTCCCTCAAGGTAGAAGCTTTTTGAGAGAACCCCTCAATGAAATC
AGCATTGCTCTGCATCATGCAGATGAAACTGATTAACTCCTCTTTGTTCT
TAGGAGTGGTGAGGTGGTTCAAAGCTTCAACCTTTTCAGGATCTGGTCTT
ATACCAGCTGCTGAAATGACCATTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTAAATGATCT
GTGAGATGGATCATTCTGACAGGTGTAAGTACTTCAGGTTGGTTGTTGAA
GCTTACAATATTCAATTGGGTTGCCATCGCACCGGAAAGTATGGATTCAC
ATGGCTCTTTTATGATGTACCATTGAACTGGAACCGTCCTGTCACCGAAT
GAAACACTACATCGACTAACTCCAATTGCTGGTATCGGTTTGCTTTTGTA
TGGCTTTATTCTGAGATTGTTTTACTCATTCTGTCTAGTATATTCCATTT
TTTAGCTGTTTCCATGCTACACACTGAGATTCCTGCCCCTGTATCGGCTA
ATACAGTGTCTAGATGGTTGTTAATGAGGATATTTGTTCTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TTTTTAGCTGGGATCTGGGAGTCTGGGCTGAAGGTGGGAATTTTAGGATA
AGGTGGGACCTGAATTTTCAGGTGGGACCTGGAACCCCCTTGAACACTAT
GATTATACACTTGAGATTCCTCATCAGTTGAAGTCGATTCTTCTACCTCA
TTGATTTCCATTTCCTTCCTTGCTGGTCTACTTTTACATACTTTTGCATA
GTGGCCAGTTTTGTTGCATTTGCTACAAACAGATGCTCTTGCTGGGCATT
GTTTAGCATGTACGACGATATCTTGTTTCTTGCCTGTTATTCCACAGAAA
AAGCAGGATGTTGATTGGTCTTTATTTGGCACTTTTGTCCCATTTCTTCG
GTCCTTCTCCACCAATTTCACATGCACTTTCGAGACGATTGCCTTCCTTT
CGTAGTGTATTGAGTTCCCAGGAATTTTTTAGTGCTTCTTCTCGAATCTC
CTCATTGGACAAACCAATTACTATTTGGTCCCTGACAGCAGTTGATAGTG
CAGTACAGTCATCATTCGAGCATTGAAACTGGCAGTGTTTTGCTTCCTTC
TCAACTCTGTTGGAAAATGCGATAAAGGTTTCCCCTTTTCCTTGAGAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAATGGAACCTA
AGTCTCCTTTCAATTCCACTTTGTCCTGGGTGAGATCCCCTGTGTGCTAG
TTAAATAGCTAGTTTGTGTAGTGATTCTGGAATAACAATTCTTTCTCCAC
CAATTTCACGTGCACTTTTCGATGCACTTTCGAGACGCATGCCTTCCTTT
CGTAGTGTATTGAGTTTCCAGGAATTTTTTAGTGCTTCTTCTCAAATCTC
CTCATTGGACTAACCAATTAGTACTATTTGGTCCCTGACAGCAGTTGATA
GTGCAGTACAGTCATCATTCGAGCATTGAAACTGGCAGTGTTTTGCTTCC
TTCTCAACTCTGTTAGAAAATGCGATAAAGGTAAAGCTGAGAGGGATCTG
AATTGGAAATGTTTCAATGTGAGGTTCTCGGTAGGCTTGTAGTAACTGTC
CATTGTGTCCTTAAATTGGTTCCACGTTGCATCCTTTCTTGATTTTTCAG
GCCATTGTCCAGTCACTAACCAAGCGCCTTGATGAATAGATGCCCAAGAA
TTTTGCAACCATGTCTTTGGCTTTCCATTGGTCGACTATATCATCAAATT
CTGCCATTGTAGGGTTTTTATCGTCGTTTCCAAGTTTCCACCTTTGAAAA
GCGGAGTCCAAGGATTTGGAGGATCTGGATACATTGCTGCGTAACGTAAT
TCATAGTCTTGGGTGAATTCAAGAAAAGCCTTCAGTGTATTGTCTGGGTG
GCAGTCAGGGTCAAAGAATAATGAGGCTATGGCATTAGTAATCATATTAC
CAACAGACCAACCTTTGTAAGGATGGAGGTTCACCAATTGGATTGGTGAA
AGGCTGAGGCAAGTGTTTATCAGACCNNNNNNNNNCTATGGCATTAGTAC
TCATATTACCAACAGACCAACCTTTGTAAGGATGGAGGTTCACCAATTGG
ATTGGTGAAAGGCTGAGGCAAGTGTTTATCAGACCAAACAAATTGTCTGG
TGGTTCACCGTACTTGGTGAAAGCCTGAATAACTTAGAGTAATGCACACA
CCTTGAAAGAACCAAACAAATTGTCTGGTAATTCACCTATTAGGTGAAAG
ACTTATAGTTTTGGATAGATATAATATAAAGAGAAAAACAGAACCAAACG
TTGTTTGGTGGCCACCTGTGTTACAGGTAAAAGATTGTAATTGTCGGTTA
ACTTACCTTGTAGTCAATCAGTTGTCTACGATGAAGGAGTGTTACCTTTG
TGTTTGTAGTCTTTCTTTTTTCTTGTAAAGCTTTATCTTCGTCGCCAAGA
ATAATATGACCAAGTGGTGTTTATTTATGTTATTCTTTGTATTTTATTAA
TTGACCCTGACTCTAAAGATAAGAAATATACGAAATATATTATGACGGTA
TGAAGCTGAAAATTTTTTGTCTGTGGGGCAATGTTTTTTTTTGTAAAATG
AGCAAAATATTTTGTCTTACTTACCGTAAGTTGGTCTAATGTCGACATCC
CTCTTCTAATTTCGACACCCTTCTTTAGAGATAGGAACAATAGAAACTGG
GGAAGGTCGGAATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTAGAGGAAAAATCTTTAGTCTATCAGTGATTTCGACCTTCT
TATTATTCCTATCTATAAAGAAGGATGTCGAAATTAGAAGACGGATGTCG
ACATTAGACCAACTTTCGGTAATATCCTTCGAACAACAACTGCAACACAA
TTTAAATTGAGTAACCCTTTTTTTGTGGATCAAACTTTTAAAAGTGTTGA
GGGTTGAAAGCAACCCCAGGCTGACGCTATGGTTGATTAGATGCTACTCA
TTAAAACGCTGGAGCGGTACCATTAATTAATGGTATTATAAATAATATAT
ATGGTATTATATTGTGCAGGGATCAGAGTGTAAAGAACGGGTCTACCAGA
ACAAACTCTCAGCTCTTGGCAGCTTGGTCTATCTGTTACAGTAATTGAAA
TATTTCTATCCTAAATATCTTAGACTGTAGTAAAATCATTTAGGAAAAGG
ACTTGTACGATTGATTAGAAGTAATTCTAAATAAAAAAGACTTGAATTAA
CTCCTAACAAAATCGTCACGCTCTTAGCATTCTAGGACCTCTTAGTATAT
ACAACCTAATACCATATATCTTAGTATATTTAAGAGATTGTAGTCTTAGT
ATGCTATGGTTAAACCTGACTGTTTGGATTGGTTGCACAGTTACATTCCT
AATCTTCTTACAGTAAGATAAAGTCTTTTGAATTAAACATGTTTGGGCAT
TCTTTGATACTTTTCTTTTTTGTGGGTAAAATCTCTCCTGCCCCTTGAAT
TTAACCAACGGTTTTTTAAGCCTCTGAATTTGGACTTAGGAAAATGAAAA
TTGCCTCAACATACAAAGTTATAAAATTTTAGAGTCAGTGCATCTAGAAC
AGTCTGAAACAGTTTGTTTACTGTTTGCAATGAAATGAACTATTTTTGTT
GAAACAGACATTTGTTTATTTGTTTACAGAACTCAAAAACCTCTAAAAAC
TTTTTGAGAATCTCCCAAAAAATCTTAAATATATGTAGATAATATTATTA
GTTTTATAGTTTTGCTTGTAAACAACAATACTAAAAAGTTAAATTTTGAT
GTGAAATATTTTTCCTATTTTAGATTTAGAGCAGAAAAAGGGGCTGAGCT
AATAATTTAAGTAATTTTCAATCAATTATTTCAATGATTTTGATAGATCA
ATTTCATTGCTTTTTATATACCCAAAACACTGTGAATGTTTTGTCTTTAA
GTAAACTGTTATACCCTGTTATAACCTTTTTTGTTTCGCGGAAATGGGGA
CTCTGTTCTTAAAATTTTCATTAGCCCTCCTCCCTGAAAATTTGAAAATG
GAACTTGTTGGTACTATCTGGCTCTCTAATCCATGGAAAAGGCTTAGAGC
AAAATTTTGGCTATAATATTTGCTGGGCCTGTAGCCATTGAAAGTGGAAA
AATGGATAATTATTATATGTGACCCCCCAAGCGATTTGGAGTACATTAAA
AATGAGACCGGTCTTGGTGCGGACAGATCGATAATATGTGCGGCAAAAAA
GCGGCGAAAAGATTTACCGTGCGGCCAGAAATCATCCAAAACTCTTTTCT
AAAATCCATTCAAACGCACTCGATCGGTCACTAAAGAGCACCATTTGAAT
AAGTGCGGTATTCAGTGCGGTCATGGTGCGGACATGTTGCCGTTCGAAAC
GTTTGCCGGCAAACAAGAAATCATAACAAACAGCATACAGCATACATACA
AACGGCGGGGACCGCACCATCGTCCGCTTTAGTCGGCGTTTTGTACGCAC
GGACCATACGGTACTGTGCGGTCTTCTGGCCGCTTTTTTCAACTTTTACT
CGCACAATTAACCAGTCGGAAAGCGGCACGATCACGACCGCACCAAGACC
GGTCTCGTTTTTAATGTACTCCAAATCGTTTGGAGGGTCACATATTTCCC
TNATTTGCTGGGCCTGTAGCCATTGAAAGTGGAAAAATGAATAATTATTA
TATTTCCCTCTAGAGATATTCTATAAATTTCATTTTGACAATATTTATTT
TACCTTTAGAGAAAATGAAGGCTGAGTCATACCTTTGCATCAGTGCCTTT
TTCACATTTTGGGGTGACCGTATGTGGCAATTTGCTACTGGCATCTTCCT
AATTCAACTCACACCAGAATCGTTACGCTTGGCAGCTACTTATGGGTTAT
GTTTATCTCTGATTGCCATAATTTTCTCACCCATGATTGGAGACTGGGTT
GATAGAACAGCAAGATTAGAAGTCATTCAGTTATTATTGTTGATTCAAAA
CTCTCTAGTTGTTGTATGTGCAATAACAATTTATCTTTGTATGAGATATA
AAACGGGTAATCTGCAACTTTTTCTTCAAGCACTTATAATCTTGTTAGGA
TCTGCAGCAAATTTAGCCTCTCAGGGACAAAAGATTGCAATTGGTAAGGA
CTGGATTGTTGTGGTTTGTAAACAAGATAAAGATTTACTTGCTCATACCA
ATGCCTTGCTAAGAAGAATAGATCTTACTGTTGCAATCCTTGCTCCATTA
GTTGTCGGCTTTCTAATGAGTGGCATCTCAACATTGGCTGGTATCATATT
TATTTGCGTTTGGAATGTTGTATCCTTGTTTTTTGAATATGGATTCTTAT
TAAAAGTCTATAATTTGACTCCAGATCTATCAGTGAAGAATAACACAAAA
AAGCCAAAAAATAACCCAGATGATGACAACCACGCTGCCAAAACAGAAGA
TGCTAAATCAAATCAAGTTGAAGAGATCCAGGTTGCTGTTACAAATGCTA
ATAAAGAAACAAGCAGCTGGAACCTTATCAAACGTGTTCAACTTGTTATC
TCAGGCTGGCATATTTATTATCGTCAAACTGTCTTCTTAGCTGGTTGTTC
CCTATCAATGTTGTATCTTACTGTCATTGGGTTTAGTGCAATCACCACTG
GTTTTGCCTATGAACTTGGCTTAAGTGAGCTTTATGTCAGTATCTGTATG
GGTCTGGGGTCTTTGTTTGGTGTCTTTGGCACCCTACTGTTTCCTAAAAT
ACGCAACCGGCTTGGATTAGTGAAATCTGGTATTGTTGGATTTTTGTTGC
AGTTATCAATGCTTGTGTTTTGTGTTGCATCCATATGGATGCCAGGTAGT
CCTAGTAATCTTTACAATGGTAAACAATTTATAATATCTGCATTACCAGC
AACCAATATGACTGCCCTCAATACTACAAGTGGTAACCATACAGGCCCAA
CTTTGCAGCCAACAGTTACACCGAAACCACAACGCATCCTAACATCGATT
ATCTTTCTCATGACTGGTATTATATTATCGCGTACTGGTTTATGGTTATC
AGACCTCACCATCACTCAACTTCAACAAGAATATGTTTCAGAAAGTGAAC
GGGGTATTGTCGGTGGTGTACAATACGCTTCCAATTGTCTTTTAGACCTG
GTCCATTTTCTTCTCACCATCTCCTTACCAAAACCAGATCAATTTGGTAT
TTTGATTTTGATATCATTTTGTGCAATTGGCTGTGCTGGTTTCATCTACT
TGGTTTTTGTTTCCAGATTTCATTCTTCTGTCAAGCAGGATGCAAATAAA
TACAAAACAATGGAGGATTGAGGTACTACTTTAGGCGTACAAGCTTTTGC
GAGCAGAAACATACACAAGGTCGAAATTTACGACATTTACTTTCGCGAAT
TTGAGGAAAAAATGTTTTTCGCAAGCATGAATATTCGCAAATGATTGGAT
AAAATGAGAATTTTCAAATGAAAATTGTCTTAAAGTGAAAAGTATACCTT
AA

Coding sequence (CDS) from alignment at scaffold_97:233690..246141-

>TCONS_00073707 ID=TCONS_00073707|Name=TCONS_00073707|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_97:233690..246141- (Clytia hemisphaerica)
ATGAAGGCTGAGTCATACCTTTGCATCAGTGCCTTTTTCACATTTTGGGG
TGACCGTATGTGGCAATTTGCTACTGGCATCTTCCTAATTCAACTCACAC
CAGAATCGTTACGCTTGGCAGCTACTTATGGGTTATGTTTATCTCTGATT
GCCATAATTTTCTCACCCATGATTGGAGACTGGGTTGATAGAACAGCAAG
ATTAGAAGTCATTCAGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTG
TATGTGCAATAACAATTTATCTTTGTATGAGATATAAAACGGGTAATCTG
CAACTTTTTCTTCAAGCACTTATAATCTTGTTAGGATCTGCAGCAAATTT
AGCCTCTCAGGGACAAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGG
TTTGTAAACAAGATAAAGATTTACTTGCTCATACCAATGCCTTGCTAAGA
AGAATAGATCTTACTGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCT
AATGAGTGGCATCTCAACATTGGCTGGTATCATATTTATTTGCGTTTGGA
ATGTTGTATCCTTGTTTTTTGAATATGGATTCTTATTAAAAGTCTATAAT
TTGACTCCAGATCTATCAGTGAAGAATAACACAAAAAAGCCAAAAAATAA
CCCAGATGATGACAACCACGCTGCCAAAACAGAAGATGCTAAATCAAATC
AAGTTGAAGAGATCCAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGC
AGCTGGAACCTTATCAAACGTGTTCAACTTGTTATCTCAGGCTGGCATAT
TTATTATCGTCAAACTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGT
ATCTTACTGTCATTGGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAA
CTTGGCTTAAGTGAGCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTT
GTTTGGTGTCTTTGGCACCCTACTGTTTCCTAAAATACGCAACCGGCTTG
GATTAGTGAAATCTGGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTT
GTGTTTTGTGTTGCATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTA
CAATGGTAAACAATTTATAATATCTGCATTACCAGCAACCAATATGACTG
CCCTCAATACTACAAGTGGTAACCATACAGGCCCAACTTTGCAGCCAACA
GTTACACCGAAACCACAACGCATCCTAACATCGATTATCTTTCTCATGAC
TGGTATTATATTATCGCGTACTGGTTTATGGTTATCAGACCTCACCATCA
CTCAACTTCAACAAGAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGT
GGTGTACAATACGCTTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCT
CACCATCTCCTTACCAAAACCAGATCAATTTGGTATTTTGATTTTGATAT
CATTTTGTGCAATTGGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCC
AGATTTCATTCTTCTGTCAAGCAGGATGCAAATAAATACAAAACAATGGA
GGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045765XLOC_045765Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073707-proteinTCONS_00073707-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073707-exon-scaffold_97-1575043694:246111..246141TCONS_00073707-exon-scaffold_97-1575043694:246111..246141Clytia hemisphaericaexon
TCONS_00073707-exon-scaffold_97-1575043694:233690..235432TCONS_00073707-exon-scaffold_97-1575043694:233690..235432Clytia hemisphaericaexon
TCONS_00073707-exon-scaffold_97-1510915933:246111..246141TCONS_00073707-exon-scaffold_97-1510915933:246111..246141Clytia hemisphaericaexon
TCONS_00073707-exon-scaffold_97-1510915933:233690..235432TCONS_00073707-exon-scaffold_97-1510915933:233690..235432Clytia hemisphaericaexon
TCONS_00073707-exon-scaffold_97-1491911889:246111..246141TCONS_00073707-exon-scaffold_97-1491911889:246111..246141Clytia hemisphaericaexon
TCONS_00073707-exon-scaffold_97-1491911889:233690..235432TCONS_00073707-exon-scaffold_97-1491911889:233690..235432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:233690..246141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252808	0.901391	1.05872e-07	0.885924	2.80216	1.60616	2.81615	3.14343	2.12152	2.11961	2.2895	0.948603	3.56564	3.18076	4.25534	4.44518	3.53065	2.37695	1.67963	2.38022	2.06088	1.68552	4.28873	4.84634	2.99416	4.23313	0.596265	0.101107	2.1808	1.77191
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009716Ferroportin-1
IPR020846MFS_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0034755iron ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005381iron ion transmembrane transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034755 iron ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005381 iron ion transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00073707 vs. Swiss-Prot (Human)
Match: S40A1 (Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.340e-101
Identity = 199/512 (38.87%), Postives = 288/512 (56.25%), Query Frame = 1 
Query:   82 WGDRMWQFATGIFLIQLTPESLRLAATYGLCLSLIAIIFSPMIGDWVDRTARLEVIQLLLLIQNSLVVVCAITIYLCMRYKT-------GNXXXXXXXXXXXXGSAANLASQGQKIAIGKDWIVVVCKQDKDLLAHTNALLRRIDLTVAILAPLVVGFLMSGISTLAGIIFICVWNVVSLFFEYGFLLKVYNLTPDLSVXXXXXXXXXXXXXXXHAAKTEDA----------KSNQVEEIQVAVTNANKETSSWNLIKRVQLVISGWHIYYRQTVFLAGCSLSMLYLTVIGFSAITTGFAYELGLSELYVSICMGLGSLFGVFGTLLFPKIRNRLGLVKSGIVGFLLQLSMLVFCVASIWMPGSP------------SNLYNGKQFIISALPATNMTALNTTSGNHTGPTLQPTVTPKPQRILTSIIFLMTGIILSRTGLWLSDLTITQLQQEYVSESERGIVGGVQYASNCLLDLVHFLLTISLPKPDQFGILILISFCAIGCAGFIYLVF 1530
            WGDRMW FA  +FL++L   SL L A YGL ++   ++   +IGDWVD+ ARL+V Q  L++QN  V++C I + +   +K        G +      LII + + ANLAS    I I +DWIVVV  +D+  LA+ NA +RRID    ILAP+ VG +M+  S + G  FI  WN+VS+  EY  L KVY  TP L+VK   K+ +      N    TE            K + + E++    +  + T +  + +  +    GW  YY Q VFLAG  L+ LY+TV+GF  ITTG+AY  GLS   +SI MG  ++ G+ GT+ F  +R + GLV++G++  L QLS L+ CV S++MPGSP            S    G+    + +P    T +  ++G+++   + P  +P+   I+ S+  L  G+I +R GLW  DLT+TQL QE V ESERGI+ GVQ + N LLDL+HF++ I  P P+ FG+L+LIS   +     +Y  F
Sbjct:   37 WGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELE----HEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEIT-TEIYMSNGSNSA-NIVPETSPESVPII-SVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRF 541
The following BLAST results are available for this feature:
BLAST of TCONS_00073707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S40A12.340e-10138.87Solute carrier family 40 member 1 OS=Homo sapiens ... [more]
back to top