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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073706 ID=TCONS_00073706|Name=TCONS_00073706|organism=Clytia hemisphaerica|type=transcript|length=2182bp
CGATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTATTCAGTGCGG
TCATGGTGCGGACATGTTGCCGTTCGAAACGTTTGCCGGCAAACAAGAAA
TCATAACAAACAGCATACAGCATACATACAAACGGcggggaccgcaccat
cgtccgcTTTAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCG
GTCTTCTGGccgcttttttcaacttttactcGCACAATTAACCAGTCGGA
AAGCGGCACGATCACGaccgcaccaagaccggtctcgtttttaatgtact
ccaaatcgtttGGAGGGTCACATATTTCCCTNATTTGCTGGGCCTGTAGC
CATTGAAAGTGGAAAAATGAATAATTATTATATTTCCCTCTAGAGATATT
ctataaatttcattttgacaatatttattTTACCTTTAGAGAAAATGAAG
GCTGAGTCATACCTTTgcatcagtgcctttttcacattttggggTGACCG
TATGTGGCAATTTGCTACTGGCATCTTCCTAATTCAACTCACACCAGAAT
CGTTACGCTTGGCAGCTACTTATGGGTTATGTTTATCTCTGATTGCCATA
ATTTTCTCACCCATGATTGGAGACTGGGTTGATAGAACAGCAAGATTAGA
AGTCATTCAGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTGTATGTG
CAATAACAATTTATCTTTGTATGAGATATAAAACGGGTAATCTGCAACTT
TTTCTTCAAGCACTTATAATCTTGTTAGGATCTGCAGCAAATTTAGCCTC
TCAGGGACAAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGGTTTGTA
AACAAGATAAAGATTTACTTGCTCATACCAATGCCTTGCTAAGAAGAATA
GATCTTACTGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCTAATGAG
TGGCATCTCAACATTGGCTGGTATCATATTTATTTGCGTTTGGAATGTTG
TAtccttgttttttgaatatggATTCTTATTAAAAGTCTATAATTTGACT
CCAGATCTATCAGTGAAGAATAAcacaaaaaagccaaaaaataacCCAGA
TGATGACAACCACGCTGCCAAAACAGAAGATGCTAAATCAAATCAAGTTG
AAGAGATCCAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGCAGCTGG
AACCTTATCAAACGTGTTCAACTTGTTATCTCAGGCTGGCATATTTATTA
TCGTCAAACTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGTATCTTA
CTGTCATTGGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAACTTGGC
TTAAGTGAGCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTTGTTTGG
TGTCTTTGGCACCCTACTGTTTCCTAAAATACGCAACCGGCTTGGATTAG
TGAAATCTGGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTTGTGTTT
TGTGTTGCATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTACAATGG
TAAACAATTTATAATATCTGCATTACCAGCAACCAATATGACTGCCCTCA
ATACTACAAGTGGTAACCATACAGGCCCAACTTTGCAGCCAACAGTTACA
CCGAAACCACAACGCATCCTAACATCGATTATCTTTCTCATGACTGGTAT
TATATTATCGCGTACTGGTTTATGGTTATCAGACCTCACCATCACTCAAC
TTCAACAAGAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGTGGTGTA
CAATACGCTTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCTCACCAT
CTCCTTACCAAAACCAGATCAATTtggtattttgattttgatatcatTTT
GTGCAATTGGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCCAGATTT
CATTCTTCTGTCAAGCAGGATGCAAATAAATACAAAACAATGGAGGATTG
AggtactactttaggcgtacaagcttttgcgagcagaaacaTACACAAGG
tcgaaatttacgacatttactttcgcgaatttgaggaaaaaatgtttttc
gcaaGCATGAATATTCGCAAATGATTGgataaaatgagaattttcaaatg
aaaattgtcTTAAAGTGAAAAGTATACCTTAA Run BLAST on NCBI transcript from alignment at scaffold_97:233690..235871- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073706 ID=TCONS_00073706|Name=TCONS_00073706|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at scaffold_97:233690..235871- (Clytia hemisphaerica)
CGATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTATTCAGTGCGG
TCATGGTGCGGACATGTTGCCGTTCGAAACGTTTGCCGGCAAACAAGAAA
TCATAACAAACAGCATACAGCATACATACAAACGGCGGGGACCGCACCAT
CGTCCGCTTTAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCG
GTCTTCTGGCCGCTTTTTTCAACTTTTACTCGCACAATTAACCAGTCGGA
AAGCGGCACGATCACGACCGCACCAAGACCGGTCTCGTTTTTAATGTACT
CCAAATCGTTTGGAGGGTCACATATTTCCCTNATTTGCTGGGCCTGTAGC
CATTGAAAGTGGAAAAATGAATAATTATTATATTTCCCTCTAGAGATATT
CTATAAATTTCATTTTGACAATATTTATTTTACCTTTAGAGAAAATGAAG
GCTGAGTCATACCTTTGCATCAGTGCCTTTTTCACATTTTGGGGTGACCG
TATGTGGCAATTTGCTACTGGCATCTTCCTAATTCAACTCACACCAGAAT
CGTTACGCTTGGCAGCTACTTATGGGTTATGTTTATCTCTGATTGCCATA
ATTTTCTCACCCATGATTGGAGACTGGGTTGATAGAACAGCAAGATTAGA
AGTCATTCAGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTGTATGTG
CAATAACAATTTATCTTTGTATGAGATATAAAACGGGTAATCTGCAACTT
TTTCTTCAAGCACTTATAATCTTGTTAGGATCTGCAGCAAATTTAGCCTC
TCAGGGACAAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGGTTTGTA
AACAAGATAAAGATTTACTTGCTCATACCAATGCCTTGCTAAGAAGAATA
GATCTTACTGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCTAATGAG
TGGCATCTCAACATTGGCTGGTATCATATTTATTTGCGTTTGGAATGTTG
TATCCTTGTTTTTTGAATATGGATTCTTATTAAAAGTCTATAATTTGACT
CCAGATCTATCAGTGAAGAATAACACAAAAAAGCCAAAAAATAACCCAGA
TGATGACAACCACGCTGCCAAAACAGAAGATGCTAAATCAAATCAAGTTG
AAGAGATCCAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGCAGCTGG
AACCTTATCAAACGTGTTCAACTTGTTATCTCAGGCTGGCATATTTATTA
TCGTCAAACTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGTATCTTA
CTGTCATTGGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAACTTGGC
TTAAGTGAGCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTTGTTTGG
TGTCTTTGGCACCCTACTGTTTCCTAAAATACGCAACCGGCTTGGATTAG
TGAAATCTGGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTTGTGTTT
TGTGTTGCATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTACAATGG
TAAACAATTTATAATATCTGCATTACCAGCAACCAATATGACTGCCCTCA
ATACTACAAGTGGTAACCATACAGGCCCAACTTTGCAGCCAACAGTTACA
CCGAAACCACAACGCATCCTAACATCGATTATCTTTCTCATGACTGGTAT
TATATTATCGCGTACTGGTTTATGGTTATCAGACCTCACCATCACTCAAC
TTCAACAAGAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGTGGTGTA
CAATACGCTTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCTCACCAT
CTCCTTACCAAAACCAGATCAATTTGGTATTTTGATTTTGATATCATTTT
GTGCAATTGGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCCAGATTT
CATTCTTCTGTCAAGCAGGATGCAAATAAATACAAAACAATGGAGGATTG
AGGTACTACTTTAGGCGTACAAGCTTTTGCGAGCAGAAACATACACAAGG
TCGAAATTTACGACATTTACTTTCGCGAATTTGAGGAAAAAATGTTTTTC
GCAAGCATGAATATTCGCAAATGATTGGATAAAATGAGAATTTTCAAATG
AAAATTGTCTTAAAGTGAAAAGTATACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073706-exon-scaffold_97-1575043694:233690..235871 | TCONS_00073706-exon-scaffold_97-1575043694:233690..235871 | Clytia hemisphaerica | exon |
| TCONS_00073706-exon-scaffold_97-1510915933:233690..235871 | TCONS_00073706-exon-scaffold_97-1510915933:233690..235871 | Clytia hemisphaerica | exon |
| TCONS_00073706-exon-scaffold_97-1491911889:233690..235871 | TCONS_00073706-exon-scaffold_97-1491911889:233690..235871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:233690..235871 - |
Blast
BLAST of TCONS_00073706 vs. Swiss-Prot (Human)
Match: S40A1 (Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 7.764e-100 Identity = 199/512 (38.87%), Postives = 288/512 (56.25%), Query Frame = 1
Query: 490 WGDRMWQFATGIFLIQLTPESLRLAATYGLCLSLIAIIFSPMIGDWVDRTARLEVIQLLLLIQNSLVVVCAITIYLCMRYKT-------GNXXXXXXXXXXXXGSAANLASQGQKIAIGKDWIVVVCKQDKDLLAHTNALLRRIDLTVAILAPLVVGFLMSGISTLAGIIFICVWNVVSLFFEYGFLLKVYNLTPDLSVXXXXXXXXXXXXXXXHAAKTEDA----------KSNQVEEIQVAVTNANKETSSWNLIKRVQLVISGWHIYYRQTVFLAGCSLSMLYLTVIGFSAITTGFAYELGLSELYVSICMGLGSLFGVFGTLLFPKIRNRLGLVKSGIVGFLLQLSMLVFCVASIWMPGSP------------SNLYNGKQFIISALPATNMTALNTTSGNHTGPTLQPTVTPKPQRILTSIIFLMTGIILSRTGLWLSDLTITQLQQEYVSESERGIVGGVQYASNCLLDLVHFLLTISLPKPDQFGILILISFCAIGCAGFIYLVF 1938
WGDRMW FA +FL++L SL L A YGL ++ ++ +IGDWVD+ ARL+V Q L++QN V++C I + + +K G + LII + + ANLAS I I +DWIVVV +D+ LA+ NA +RRID ILAP+ VG +M+ S + G FI WN+VS+ EY L KVY TP L+VK K+ + N TE K + + E++ + + T + + + + GW YY Q VFLAG L+ LY+TV+GF ITTG+AY GLS +SI MG ++ G+ GT+ F +R + GLV++G++ L QLS L+ CV S++MPGSP S G+ + +P T + ++G+++ + P +P+ I+ S+ L G+I +R GLW DLT+TQL QE V ESERGI+ GVQ + N LLDL+HF++ I P P+ FG+L+LIS + +Y F
Sbjct: 37 WGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELE----HEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEIT-TEIYMSNGSNSA-NIVPETSPESVPII-SVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRF 541
The following BLAST results are available for this feature:
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