TCONS_00073706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073706
Unique NameTCONS_00073706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073706 ID=TCONS_00073706|Name=TCONS_00073706|organism=Clytia hemisphaerica|type=transcript|length=2182bp
CGATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTATTCAGTGCGG
TCATGGTGCGGACATGTTGCCGTTCGAAACGTTTGCCGGCAAACAAGAAA
TCATAACAAACAGCATACAGCATACATACAAACGGcggggaccgcaccat
cgtccgcTTTAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCG
GTCTTCTGGccgcttttttcaacttttactcGCACAATTAACCAGTCGGA
AAGCGGCACGATCACGaccgcaccaagaccggtctcgtttttaatgtact
ccaaatcgtttGGAGGGTCACATATTTCCCTNATTTGCTGGGCCTGTAGC
CATTGAAAGTGGAAAAATGAATAATTATTATATTTCCCTCTAGAGATATT
ctataaatttcattttgacaatatttattTTACCTTTAGAGAAAATGAAG
GCTGAGTCATACCTTTgcatcagtgcctttttcacattttggggTGACCG
TATGTGGCAATTTGCTACTGGCATCTTCCTAATTCAACTCACACCAGAAT
CGTTACGCTTGGCAGCTACTTATGGGTTATGTTTATCTCTGATTGCCATA
ATTTTCTCACCCATGATTGGAGACTGGGTTGATAGAACAGCAAGATTAGA
AGTCATTCAGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTGTATGTG
CAATAACAATTTATCTTTGTATGAGATATAAAACGGGTAATCTGCAACTT
TTTCTTCAAGCACTTATAATCTTGTTAGGATCTGCAGCAAATTTAGCCTC
TCAGGGACAAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGGTTTGTA
AACAAGATAAAGATTTACTTGCTCATACCAATGCCTTGCTAAGAAGAATA
GATCTTACTGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCTAATGAG
TGGCATCTCAACATTGGCTGGTATCATATTTATTTGCGTTTGGAATGTTG
TAtccttgttttttgaatatggATTCTTATTAAAAGTCTATAATTTGACT
CCAGATCTATCAGTGAAGAATAAcacaaaaaagccaaaaaataacCCAGA
TGATGACAACCACGCTGCCAAAACAGAAGATGCTAAATCAAATCAAGTTG
AAGAGATCCAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGCAGCTGG
AACCTTATCAAACGTGTTCAACTTGTTATCTCAGGCTGGCATATTTATTA
TCGTCAAACTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGTATCTTA
CTGTCATTGGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAACTTGGC
TTAAGTGAGCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTTGTTTGG
TGTCTTTGGCACCCTACTGTTTCCTAAAATACGCAACCGGCTTGGATTAG
TGAAATCTGGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTTGTGTTT
TGTGTTGCATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTACAATGG
TAAACAATTTATAATATCTGCATTACCAGCAACCAATATGACTGCCCTCA
ATACTACAAGTGGTAACCATACAGGCCCAACTTTGCAGCCAACAGTTACA
CCGAAACCACAACGCATCCTAACATCGATTATCTTTCTCATGACTGGTAT
TATATTATCGCGTACTGGTTTATGGTTATCAGACCTCACCATCACTCAAC
TTCAACAAGAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGTGGTGTA
CAATACGCTTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCTCACCAT
CTCCTTACCAAAACCAGATCAATTtggtattttgattttgatatcatTTT
GTGCAATTGGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCCAGATTT
CATTCTTCTGTCAAGCAGGATGCAAATAAATACAAAACAATGGAGGATTG
AggtactactttaggcgtacaagcttttgcgagcagaaacaTACACAAGG
tcgaaatttacgacatttactttcgcgaatttgaggaaaaaatgtttttc
gcaaGCATGAATATTCGCAAATGATTGgataaaatgagaattttcaaatg
aaaattgtcTTAAAGTGAAAAGTATACCTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_97:233690..235871-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073706 ID=TCONS_00073706|Name=TCONS_00073706|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at scaffold_97:233690..235871- (Clytia hemisphaerica)
CGATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTATTCAGTGCGG TCATGGTGCGGACATGTTGCCGTTCGAAACGTTTGCCGGCAAACAAGAAA TCATAACAAACAGCATACAGCATACATACAAACGGCGGGGACCGCACCAT CGTCCGCTTTAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCG GTCTTCTGGCCGCTTTTTTCAACTTTTACTCGCACAATTAACCAGTCGGA AAGCGGCACGATCACGACCGCACCAAGACCGGTCTCGTTTTTAATGTACT CCAAATCGTTTGGAGGGTCACATATTTCCCTNATTTGCTGGGCCTGTAGC CATTGAAAGTGGAAAAATGAATAATTATTATATTTCCCTCTAGAGATATT CTATAAATTTCATTTTGACAATATTTATTTTACCTTTAGAGAAAATGAAG GCTGAGTCATACCTTTGCATCAGTGCCTTTTTCACATTTTGGGGTGACCG TATGTGGCAATTTGCTACTGGCATCTTCCTAATTCAACTCACACCAGAAT CGTTACGCTTGGCAGCTACTTATGGGTTATGTTTATCTCTGATTGCCATA ATTTTCTCACCCATGATTGGAGACTGGGTTGATAGAACAGCAAGATTAGA AGTCATTCAGTTATTATTGTTGATTCAAAACTCTCTAGTTGTTGTATGTG CAATAACAATTTATCTTTGTATGAGATATAAAACGGGTAATCTGCAACTT TTTCTTCAAGCACTTATAATCTTGTTAGGATCTGCAGCAAATTTAGCCTC TCAGGGACAAAAGATTGCAATTGGTAAGGACTGGATTGTTGTGGTTTGTA AACAAGATAAAGATTTACTTGCTCATACCAATGCCTTGCTAAGAAGAATA GATCTTACTGTTGCAATCCTTGCTCCATTAGTTGTCGGCTTTCTAATGAG TGGCATCTCAACATTGGCTGGTATCATATTTATTTGCGTTTGGAATGTTG TATCCTTGTTTTTTGAATATGGATTCTTATTAAAAGTCTATAATTTGACT CCAGATCTATCAGTGAAGAATAACACAAAAAAGCCAAAAAATAACCCAGA TGATGACAACCACGCTGCCAAAACAGAAGATGCTAAATCAAATCAAGTTG AAGAGATCCAGGTTGCTGTTACAAATGCTAATAAAGAAACAAGCAGCTGG AACCTTATCAAACGTGTTCAACTTGTTATCTCAGGCTGGCATATTTATTA TCGTCAAACTGTCTTCTTAGCTGGTTGTTCCCTATCAATGTTGTATCTTA CTGTCATTGGGTTTAGTGCAATCACCACTGGTTTTGCCTATGAACTTGGC TTAAGTGAGCTTTATGTCAGTATCTGTATGGGTCTGGGGTCTTTGTTTGG TGTCTTTGGCACCCTACTGTTTCCTAAAATACGCAACCGGCTTGGATTAG TGAAATCTGGTATTGTTGGATTTTTGTTGCAGTTATCAATGCTTGTGTTT TGTGTTGCATCCATATGGATGCCAGGTAGTCCTAGTAATCTTTACAATGG TAAACAATTTATAATATCTGCATTACCAGCAACCAATATGACTGCCCTCA ATACTACAAGTGGTAACCATACAGGCCCAACTTTGCAGCCAACAGTTACA CCGAAACCACAACGCATCCTAACATCGATTATCTTTCTCATGACTGGTAT TATATTATCGCGTACTGGTTTATGGTTATCAGACCTCACCATCACTCAAC TTCAACAAGAATATGTTTCAGAAAGTGAACGGGGTATTGTCGGTGGTGTA CAATACGCTTCCAATTGTCTTTTAGACCTGGTCCATTTTCTTCTCACCAT CTCCTTACCAAAACCAGATCAATTTGGTATTTTGATTTTGATATCATTTT GTGCAATTGGCTGTGCTGGTTTCATCTACTTGGTTTTTGTTTCCAGATTT CATTCTTCTGTCAAGCAGGATGCAAATAAATACAAAACAATGGAGGATTG AGGTACTACTTTAGGCGTACAAGCTTTTGCGAGCAGAAACATACACAAGG TCGAAATTTACGACATTTACTTTCGCGAATTTGAGGAAAAAATGTTTTTC GCAAGCATGAATATTCGCAAATGATTGGATAAAATGAGAATTTTCAAATG AAAATTGTCTTAAAGTGAAAAGTATACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045765XLOC_045765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073706-exon-scaffold_97-1575043694:233690..235871TCONS_00073706-exon-scaffold_97-1575043694:233690..235871Clytia hemisphaericaexon
TCONS_00073706-exon-scaffold_97-1510915933:233690..235871TCONS_00073706-exon-scaffold_97-1510915933:233690..235871Clytia hemisphaericaexon
TCONS_00073706-exon-scaffold_97-1491911889:233690..235871TCONS_00073706-exon-scaffold_97-1491911889:233690..235871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:233690..235871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49274 1.33135 2.32214 0.997453 1.69179 1.65513 1.67221 1.54965 1.37499 1.77066 2.2808 0.973005 1.77841 1.53789 1.27466 1.71276 1.40745 1.54155 1.79212 1.40233 1.39683 2.13114 1.22165 1.12827 2.66602 2.83888 0.957953 1.22586 1.41728 1.32997
Blast
BLAST of TCONS_00073706 vs. Swiss-Prot (Human)
Match: S40A1 (Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 7.764e-100
Identity = 199/512 (38.87%), Postives = 288/512 (56.25%), Query Frame = 1
Query:  490 WGDRMWQFATGIFLIQLTPESLRLAATYGLCLSLIAIIFSPMIGDWVDRTARLEVIQLLLLIQNSLVVVCAITIYLCMRYKT-------GNXXXXXXXXXXXXGSAANLASQGQKIAIGKDWIVVVCKQDKDLLAHTNALLRRIDLTVAILAPLVVGFLMSGISTLAGIIFICVWNVVSLFFEYGFLLKVYNLTPDLSVXXXXXXXXXXXXXXXHAAKTEDA----------KSNQVEEIQVAVTNANKETSSWNLIKRVQLVISGWHIYYRQTVFLAGCSLSMLYLTVIGFSAITTGFAYELGLSELYVSICMGLGSLFGVFGTLLFPKIRNRLGLVKSGIVGFLLQLSMLVFCVASIWMPGSP------------SNLYNGKQFIISALPATNMTALNTTSGNHTGPTLQPTVTPKPQRILTSIIFLMTGIILSRTGLWLSDLTITQLQQEYVSESERGIVGGVQYASNCLLDLVHFLLTISLPKPDQFGILILISFCAIGCAGFIYLVF 1938
            WGDRMW FA  +FL++L   SL L A YGL ++   ++   +IGDWVD+ ARL+V Q  L++QN  V++C I + +   +K        G +      LII + + ANLAS    I I +DWIVVV  +D+  LA+ NA +RRID    ILAP+ VG +M+  S + G  FI  WN+VS+  EY  L KVY  TP L+VK   K+ +      N    TE            K + + E++    +  + T +  + +  +    GW  YY Q VFLAG  L+ LY+TV+GF  ITTG+AY  GLS   +SI MG  ++ G+ GT+ F  +R + GLV++G++  L QLS L+ CV S++MPGSP            S    G+    + +P    T +  ++G+++   + P  +P+   I+ S+  L  G+I +R GLW  DLT+TQL QE V ESERGI+ GVQ + N LLDL+HF++ I  P P+ FG+L+LIS   +     +Y  F
Sbjct:   37 WGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELE----HEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEIT-TEIYMSNGSNSA-NIVPETSPESVPII-SVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRF 541          
The following BLAST results are available for this feature:
BLAST of TCONS_00073706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S40A17.764e-10038.87Solute carrier family 40 member 1 OS=Homo sapiens ... [more]
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