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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073705 ID=TCONS_00073705|Name=TCONS_00073705|organism=Clytia hemisphaerica|type=transcript|length=1349bpRun BLAST on NCBI protein sequence of TCONS_00073705-protein >TCONS_00073705-protein ID=TCONS_00073705-protein|Name=TCONS_00073705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp MKCVCLYAQEFTNFRLAELESICDLLKIDIKIHKEIYNDQRPYLIIDVENRun BLAST on NCBI transcript from alignment at scaffold_97:219615..230456- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073705 ID=TCONS_00073705|Name=TCONS_00073705|organism=Clytia hemisphaerica|type=transcript|length=10842bp|location=Sequence derived from alignment at scaffold_97:219615..230456- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:219615..230456- >TCONS_00073705 ID=TCONS_00073705|Name=TCONS_00073705|organism=Clytia hemisphaerica|type=CDS|length=16068bp|location=Sequence derived from alignment at scaffold_97:219615..230456- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073705 vs. Swiss-Prot (Human)
Match: TRM11 (tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens GN=TRMT11 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 1.776e-107 Identity = 172/416 (41.35%), Postives = 250/416 (60.10%), Query Frame = 3
Query: 48 VCLYAQEFTNFRLAELESICDLLKIDIKIHKEIYNDQRPYLIIDVENDEDVKKILSRSVLMKSISELFVQSESFDAITTQNTEWKVRFKKLFTERKETYKFEVEVYNKRITLNDKVYYIEEIQKYIAIPGDVNLKKADLNFSLLLDF--------ENSGQLTQLFFGRLIGNSQRNIIFKYTLKTRYFIGNTSMDPQLSMVMANQAQVRKGSFCYDPFVGTGSIIVACSHFGAMCGGNDIDYNIIYGRGKSSRAGNKNYRAKDEIIRTNFENYDLLPFYWDIMAADATHAPFRTKEIFDAIVTDPPYGIREGGRKLGSKKDTTWDIP--EEVRDEHIPAKKLHTLSKIILDLLAFALQYLVVGGRLVYWLPVYKPTYSEEAIPKHPAFRLVSNCEQNLTKTVSRRLITMVKTKRLE 1265
+ L AQE FRL E++S+ L +E Y + P+ I+ + +++ + ++ R+V KSI EL+ +S + + + + V F TYK ++ +NK +T +K+ I+ ++ ++ G VNLKK FS+L D+ EN ++FGR I + QR +I Y++K R+FIGNTSMD LS +MAN +V++ +DPFVGTG +++AC+HFGA G DIDYN ++G GK++R N+ +R DE IR N Y L +Y D++ +DA+ +R FDAI+TDPPYGIRE R+ GS+K+ I E+ + H+P + LS + LDLL FA + LV+GGRLVYWLPVY P Y+EE +P HP LVSNCEQ L+ SRRLITM K K+ E
Sbjct: 11 LLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYG-KSPFWILSIPSEDIARNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLTQEEKIKRIDALE-FLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENP---HNIYFGRWIADGQRELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYVYGTDIDYNTVHGLGKATRK-NQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE 420 The following BLAST results are available for this feature:
BLAST of TCONS_00073705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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