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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073685 ID=TCONS_00073685|Name=TCONS_00073685|organism=Clytia hemisphaerica|type=transcript|length=4331bpRun BLAST on NCBI protein sequence of TCONS_00073685-protein >TCONS_00073685-protein ID=TCONS_00073685-protein|Name=TCONS_00073685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp MKTDNKYYEKTMAAMNITICPNGDQYVRKRLVLNRKRIPNLEVLLDNATQRun BLAST on NCBI transcript from alignment at scaffold_97:930618..946883+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073685 ID=TCONS_00073685|Name=TCONS_00073685|organism=Clytia hemisphaerica|type=transcript|length=16266bp|location=Sequence derived from alignment at scaffold_97:930618..946883+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:930618..946883+ >TCONS_00073685 ID=TCONS_00073685|Name=TCONS_00073685|organism=Clytia hemisphaerica|type=CDS|length=18630bp|location=Sequence derived from alignment at scaffold_97:930618..946883+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073685 vs. Swiss-Prot (Human)
Match: DCDC2 (Doublecortin domain-containing protein 2 OS=Homo sapiens GN=DCDC2 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 8.541e-19 Identity = 75/234 (32.05%), Postives = 120/234 (51.28%), Query Frame = 1
Query: 220 NITICPNGDQ-YVRKRLVLNRKRIPNLEVLLDNATQLIGAR-NCVRLLRTPNHGTRVRDLDSVVDGGLYVAIVGPSEKLKKLEY--NGSSKPQPKQTHDGGKRKPKI---IAQGRAFQEGLAEASRYRIIYIYPNGG--DKRTKILLDKRLLYSLEKVLQYISDKLRMRTGAVRSIYSTDGHLIKDIASIQNNSTYVAVGFGQRLIRTSYDGSNKTELL----TPRRPVQNKFS 882
++ + NGD Y +R+V++ K++ + EV L T + A VR + TP G R+R LD + GG YVA G E KKL Y G K +P + + + KP I I F++ L E I++ NG + +++L+ ++ L + VLQ +++K+ +R+GAV +Y+ +G L++ A ++N YVAVG R + +ELL T RRP K S
Sbjct: 18 SVLVYRNGDPFYAGRRVVIHEKKVSSFEVFLKEVTGGVQAPFGAVRNIYTPRTGHRIRKLDQIQSGGNYVA--GGQEAFKKLNYLDIGEIKKRPMEVVNT-EVKPVIHSRINVSARFRKPLQEPC---TIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAVG------RDKFKKLPYSELLFDKSTMRRPFGQKAS 239 The following BLAST results are available for this feature:
BLAST of TCONS_00073685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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