|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073684 ID=TCONS_00073684|Name=TCONS_00073684|organism=Clytia hemisphaerica|type=transcript|length=1581bpRun BLAST on NCBI protein sequence of TCONS_00073684-protein >TCONS_00073684-protein ID=TCONS_00073684-protein|Name=TCONS_00073684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp MAEQLGGKRRYDFGGEIVDGPGNGQLVAAKKSRNEVELYNDQQKSLLSVPRun BLAST on NCBI transcript from alignment at scaffold_97:892076..924178+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073684 ID=TCONS_00073684|Name=TCONS_00073684|organism=Clytia hemisphaerica|type=transcript|length=32103bp|location=Sequence derived from alignment at scaffold_97:892076..924178+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:892076..924178+ >TCONS_00073684 ID=TCONS_00073684|Name=TCONS_00073684|organism=Clytia hemisphaerica|type=CDS|length=12960bp|location=Sequence derived from alignment at scaffold_97:892076..924178+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073684 vs. Swiss-Prot (Human)
Match: SNR40 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 460.685 bits (1184), Expect = 6.938e-159 Identity = 211/343 (61.52%), Postives = 269/343 (78.43%), Query Frame = 1
Query: 175 LVAAKKSRNEVEL-------YNDQQKS---LLSV--PRSSGLTAPIMLLTGQESEIFCGRFHPSGKTLASAGFDRLVYLWNVYGECENFAILKGHSGAILDMHWMYDGDTLVTSSSDKTIALWDYETGAKVKKFKGHTSFVNSCCPVRRGPELVVSGSDDGEIKLWDRRKKTAVQTFMNKFPVTAVCFNDNATQIVSGGIDNIIKVWDLRKNDVMFRMTGHTDTPTGLRLSPDGSFVLSNAMDNTVRIWDIRAFAPPERCLKVFTGVHHNFEKNLLKCAWSPDGRYISAASSDRFVYVWDTVTRKILYKLPGHNGSVNDVDFHPTEPILLSAGSDKKIFLGEL 1167
LV K+ R+E+ L QQ + LL PR S L APIMLL+G E E++C +FHP+G TLASAGFDRL+ LWNVYG+C+N+A LKGHSGA++++H+ DG L ++S+DKT+A+WD ETG +VK+ KGHTSFVNSC P RRGP+LV +GSDDG +KLWD RKK A+QTF N + V AV FND + QI+SGGIDN IKVWDLR+N + + M GH D+ TGL LS +GS++LSNAMDNTVR+WD+R FAP ERC+K+F G HNFEKNLL+C+WSPDG I+A S+DRFVYVWDT +R+ILYKLPGH GS+N+V FHP EPI++SA SDK++++GE+
Sbjct: 14 LVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEI 356 The following BLAST results are available for this feature:
BLAST of TCONS_00073684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.