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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073682 ID=TCONS_00073682|Name=TCONS_00073682|organism=Clytia hemisphaerica|type=transcript|length=550bp gAAATGCCTATTGAAAACTCAAGaaCTCCAATACCGGAAAACGAATCGAC CATTGGTGATCAACGTCCTATACATATCGACCGCGTGCCTGCATCCACGG CTCTTGGCTTAGGCATTATCGGAGGTAATCATATTGGAATTTTCATCTCG GATATCCAGAAAGGAAGTTTAGCATCACAATCGAACCTACGGTGTGGTGA CCAAATTCTAAAGTACAATGATAAAGACATGGGTAACATTACCTTAGAAG AAGCCATCTTGGAATTGGGCAAACATACTGAAGTATCAGACTTACAGGTT CAATACAATCCGCCAGGATATCGCAAAGCCCAAACACAAGCCAACGATTC TTTCTACGTCCGCGCTCAATTCGATCGTTTCCCGCATGGGAAAGGAGAGC TTAGTTTCAGGAAAGGAGACATCCTTCACGTGACCGAAACTTTTTACAAA GGACAGTTGGGTGTCTGGAGAGCTAGTATTGTCAATGATAATGAAACGAC AAAACCTTCGAGCGGAAAGTTGACGAAAGGAAAAATTCCAAGCAAAAGGA Run BLAST on NCBI transcript from alignment at scaffold_97:871516..880844+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073682 ID=TCONS_00073682|Name=TCONS_00073682|organism=Clytia hemisphaerica|type=transcript|length=9329bp|location=Sequence derived from alignment at scaffold_97:871516..880844+ (Clytia hemisphaerica) gAAATGCCTATTGAAAACTCAAGGTAAATCTTTTATAGAAGGAAAATcat
atgatatttttttttcatccacACACTCACACATACACTTATTTAATGCA
TACACACCTtaaggctggtctccacttgcgcacgCTGTAATCGCAGtttt
tggcttcaatcttttttgcttggaaaaaagattacgtcataaaaatgtag
cgcgcgctcgaaagaaaagttgaacacatttcaactttttccaaccgtta
cgtcagatcgcaccaatggagttgcttcatttttcttttgaccaatagcg
tggaagctttgcttgAAAAGTGCGACttaagcgcgcgcaagtggagaccg
gcctttatacagttgactctcgctaattcgaagtCAAACGGGAAAGTcta
atttgttcaaatttcgaAAGGTTTTTCTTTGACGGggtgaaaaatacaaa
atgacaaaatgacaaaaaaaaaacagaaattttCTGGTTTGTTCGATGGa
gccattttttgagtttttacaaTAAACCATTAAAAATTCTATTATATAac
ttcaaaatatcttcaaaaaaattcaggaaattcTAGAGATTAGTTTTTTT
ATAGCAacaaaattgagtaattttatCACCATgaattttgatatcttttt
gGATTCAAATGATTATAGGGAATGAGGCAGTTAAGCGGCGgactgagaat
tagttcgaattatagaaagactcgaataatagaagttcgaattagcgaga
gtccatTGTGAGACAAAATGGCCTTTATAGTTTACTGATTCTTAGTAATC
TGTCATCACAAGCGACTttaaatgcaattaaaatggaACGTCTCCGTGTA
AAACGAACAATACGAAACGTTCTTTAACATTTAGGAAGGTTCttgtttag
acggccgactttctgccctgcctattatAATTGTTTGAGTAGGCGAAAAG
TGGGCGCAAAGTTGGTGCTGAAATCTTTGCTTCGAAAGTCTTCGAAGACT
TTGCATTggcacaattagaataggcagggtgGAAAGTgtgccgtctaaac
tagagctaagaacGGGAGAGAACGATCTTGTTCGTTCCCTTTATTTACTA
GTTTAGGCGTGTCTTAGAAAGTTCAGGGACGGTTAAGAATGTTTATTAAC
GTTCCTTAAACGTACCTGAGCGTTCTAACCAAGTTGAATATTAACCTttg
aaaacaaagttttgtcCGCAAGCGTTCTGGAACGATCAAGAAAGTTCTTA
AACATTTTCCAGGAGCGCTACGGAACCTTCAGGAGCGTCTCAAGgacatt
tcatttcatttgtatTTCAAATCGCTTGTGAATAGATCTTAtatatcgga
gttttttatttttctaaaaaagcaatgcattgtgggattgtttcgggagt
cttgcaatagaatttcttcgaggatttctattgtaatactcccgaaacaa
tcccacaatgcatcgcttttttagaaaaataaaaaaatccgataagatct
attacaCATATTAGCTGACGTACCAGTACAAATAACTTTACGCACTTTTC
TATgtacttccttcaacttttcattttctctagTACGCAATCGACACCAT
GCACTCCACGCAGATCAGTTATATCGTCTCCCGCTTTCAATAAACGAGCC
GGGCGGAATTCTGTCTCAGGGTTGACCGGAAATCTGTCCGCCCCCGGAAC
GCCCGTCACAATGCACGTACGCCTGAGTTCAAACACAAGTTCGTCTTCTG
ACCACTCTAAATTCTATTattcagaaaataaaatgtaagTTAACGAAGAT
ATAATTCCAAATAGCTCTCATCTCGATCTTTACACTTGTACTTTGAAATT
taacagaaactttcgcgggcagaaactcTCGCGAGGttgcaaaatcgcga
aatttcgcgaatttaactTTTGGAacgaattttagaattttattttGCAG
GCAAAAAGCGATAAAAATGCACAAAAGCTGAAAACTGAgtataaaataac
aaaaaagtgtacttttggtgggaaaatttctcgtgtaatttcttacttgg
cagaaagtttcggaaaaaagggcaaaaatcgCGAAAAGTTTCTACCCGCG
AAAGTTTCGGGTTAATTCAGAAAAGGATCCGTCTTGAACGTAAAGTAAAT
GCCACAAACTAGACTCATTCAAGCGCATCAAAGCTAATAGCCTAGACAAA
GAAAACTCCTAAAAGAGACACGCTAAGCACACTGGGGCTAAGATAAAATC
AATCGatttaatcaattaaaattgcgttttattatttattagaaCTCCAA
TACCGGAAAACGAATCGACCATTGGTGATCAACGTCCTATACATATCGAC
CGCGTGCCTGCATCCACGGCTCTTGGCTTAGGTAAGCaatgttaaaagtt
cttccatCTCAGGTGGATTTCTTTTCTGTCTAGGTGAAGTATGAAGTTAC
TTTTCTGTCTCCAAGTTCTGCgtaattgaccaaaatttcaaggaaTATGT
GCTAATTTTCTGTGTAACAAATTATTTCCTGTCTCAAACGAAAAACCTTT
GACTACTGGGTAAGgtgaacttcaaaaatcatttctcaGACTTTTAAAGA
ATCAGTATTAACCGTGCTAACATATAGGCCAtctcacagtcgcaaagcgt
aatgggtaatcaggactgcgCTCTAATGACggcttactattggtccaaag
ttttgaaaaattttgaagattatttCCCGTCTAGCCAACAGAAAGCCGTT
ATGGAAGTgtaatcagtcctgattacccatgatccatttcgactgtgaaa
tggcctattttgGGACAGATCAATAAGGAGCAATGGCCAAGTGGTTTAAG
GCGCTAGCGCTAAAATTGAAGAGTTCCCAGTTCGAATCCTttctccttcc
aatgttccgttcagtccATTGATAATCAAGTCGGCTGGTAGTGAACCATT
GAACTATCTAGAAATCCTCGATTACTGAGATTTCTATTTTCGAACGTTTA
TAATGAAATTACGCGTTGGAATGAGACGATATGATACTCGAGGCCTctct
tttcaaaattgaatCCCTTAAAATAGATcccaggcccggcggaacaaccg
taaaattGGGGAGTCTGAAGGctaaaaatgagctaaaattcgCTAGCAAT
TTGAgaagaaaaatctcttttgcTCAAAAAtagggaggctgaagtctccc
cgatcttcccgcttccgccgggcctggaTCCTCTGCAATAAGAATCTGAA
TCACTACCTTTTCATGACTTTCACAACAGGCATTATCGGAGGTAATCATA
TTGGAATTTTCATCTCGGATATCCAGAAAGGAAGTTTAGCATCACAATCG
AACCTACGGTGTGGTGACCAAATTCTAAAGGTAAACTTCTTATCAATGTT
CAACCGGGGTCTTGAAAATTGACAATTAGTTTTAAAAATACCGCTTCgtt
gaaatcaccaaaaaaattgACCTAATGTCAACCAAGAAAATTTGGTAGTA
CAGTGGAGTCTATTTACCTCGAACCTCTATAAGTCGaatgtctccataac
tcgaacaagctttctcgttccttcagttaacaatgccttaaagGCTACAT
acacacaatatattgtcaggcaatacaTTGATCATATACTGCTGAGTGCC
GGCagtatattgaaaaggtgtccgcaatgtATTGTCAGTttgatttgcaa
ttttccaacaatatagggggattgttacagaaagaaaattccttttttta
ataGAGGTCAGGATATATTATTTACTttgtacattacggtccgaaaatga
tattgtcaaatattgtttgtcaatatattgtgtagccCTTTACAAACCCT
ActcaataactcgaaatttccttagcTCGAACAAATTTTAATTCCCCGTG
CGTTTTCGAGctatggagactcaactgttTGATATAATGTAGTCCACGCA
AAACTTTTTTCCTCACCTTAACAGTACAATGATAAAGACATGGGTAACAT
TACCTTAGAAGAAGCCATCTTGGAATTGGGCAAACATACTGAAGTATCAG
ACTTACAGGTTCAATACAATCCGCCAGGTAAGTGTAACCATGGTAACCAT
CTCCTGTTTTATAGCtctacaatcggcgccgaaatatattgacaattttg
ggtattttaacgttttttagaatttaaagctcgggcgagaattgcagttt
cagtacttccactttgtttcattgcATTTTTCGATTCGGGAGGGCTGAGT
GGCTCCCGGAGTGGCTTCCAGACTATATTCTCAGctttttggaacatttt
tgagcttttagatcctgagatcacAATGTCTAatattaaaactcagagtt
aaaactctactttccaaccgtactttagagcacttaaaaatcacttgcgg
ttttaaagttttgaggaaatttccattttgtgccaaatatttcggcgccg
attgtagaAGTTGTATTTTGTCGttacataaggcttcgatggacaTAATA
TTAAgaacgaggggtaaatcactaaaaattaggtgtacgagattttgatt
tctttttgatttttgatttctttttgatttctttttgatttttgattttt
ttttgatttctttttgatttttgatttctttttgatttccttttgatttc
tgatttctttttgatttctttttgatttttgatctttttttttgattttt
ttttgatttttgattttttttttgatttttattttgatttctttttgaat
tctttttgatttctgatttctttttgatttctttttgatttttgatttct
ttttgatttctttttgatttttgatttctttttgatttctttttgatttt
tgatttctttttgatttctttttgatttttgatttctttttgatttcttt
ttgatttctgatttctttttgatttctttttgatttctgatttctttttg
atttctttttgatttttgattttttttttgatttttttttcgattttttt
tttatttttgatttctttttgatttctttttgatttctttttgatttctg
atttcattATGATTTctgtttgatttttgatttctttttgatttcttttt
gatttttgatttcttttttatttctttttgatttttgatttctttttgat
ttctttttgatttttcaaaaaggtgtacgtgatttttttcagtgatttac
ccctcgattaagaacaagttgagggCGTTTTAAAGGGTTTATAGATTTCA
Aaatacccgatttcttaagaaatcgcacaaaaatactcccaaaattgtga
aattaagactattttcagaacattttttaggctcaaaactcaaaatgtta
agaacattgaaaggcttcaaaaatttaactggtattataaaaaaagtcgT
GTATTTAATTTGTCTAACTATAATCAAACCAAAGGAAGTCTGTCTGTCTT
TTATACACGATGAGCCGAGGGCTGTCGCCCTCTTAAATTCACAGTTGATA
TTAGTGATTTCCTCACAAGTTTTTAAAGTTGTAccattaaaaaaacaaac
gcCTGACCAGTGAAGCACTAAAACATAATTTGATCGGCTGTATAGTTGTT
ACTATATGAACACTGTCATCCAAGGAAGATTTAAACACCCAGACCACAAA
CCATCCTAATCATTTCACTCTCAATATATAAAGAAGAAACATCCCAAGGA
TCTCCTTGACTATTTAAAATCGTAATCATTCTGCTCTCAAGGGCCATTTT
TTGTTAAATAAGAATAACCTTAAGTAAATAACGATTTTCGTGTGACCATG
TTTTCTCTGTGTCACCttttaaaaacgaaaataaaaatattttcaaaatt
ttttcataaagGAAGTTTTTTTGGAGAAGGAAAAATGAATTTGTCCTGTT
TGGGCTTTTCGCTAAACAATTTACAAAatcgaatttaagaaatattagAA
TTCacaacgtttttttaataaacaatcaaataacttcaaaaaaaaaaaag
aaggctGAAAAAAGTTTCCTGTTATTATTTCCCCGGTAATACAACCAGAA
TCCGGAGAAAATTTCCGTTCAtaagtttttccaaatttctagTCTATAGT
TTTTTTACTGTGCCATACCTAATGCTAAATTTAGTAATAACTGCgttgta
aaaacaaaaaaggaaacaGTGAGGTCACCTCGCCATAGATCACTTTCTAA
ACATtgacgaaagaaaaaaaacctcGTAGAGATGCatacttttttctaaa
atggtCTTTCTCCTTTAATGGCATATTCCCCTCGATGGAAGACTTTCTTA
AATTGTTTAACCAATTGTCAATTTTAAATACTCTCAAATATTTTAAGACC
GGCTCTTGGAGATCTACATTAATCCATTAAATGGCATCTTTATAAGATTG
TCCGATATTTACGGTCCTGTACCGGAAGGTCTAAAACAAttcgaaaaaaa
caacaaatatttCTTCGTTGGCCCTTTACGACATTTTTTAAACCCCTCTA
CATCTTTTTCGAAtacagtttttttttctataagaacaaactgtataaga
acataaggcttcgatagcaaaaatattaagttcggaacattttaaagctt
tttggactctaaaacaccaaattcCTTTAGGTAAATGGACAAAGAGGAAG
TCgctaaatggtgaaaataagaccatttaagaccatttttaggcttaaaa
caaaactcaaaaagttaagaacatccgaaagctacACAAATTCATTCTTC
GCGCCATTGAATACGTAGCATCAAAATTGTTTATAAATGTTTACATAATT
TTAACAGTGTTTTAAGCTGaggttcattttatttttttcctggtCCTCAC
TTGTATATTTCCTTATACCATTTATCATTCAGGATATCGCAAAGCCCAAA
CACAAGCCAACGATTCTTTCTACGTCCGCGCTCAATTCGATCGTTTCCCG
CATGGGAAAGGAGAGCTTAGTTTCAGGAAAGGAGACATCCTTCACGTGAC
CGAAACTTTTTACAAAGGACAGTTGGGTGTCTGGAGAGCTAGTATTGTCA
ATGATAATGAAACGACAAAACCTTCGAGCGGAAAGTTGACGAAAGGAAAA
ATTCCAAGCAAAAGGAAGTAAGGAAGAACCTCTTTTCTTTAAaccctttt
ttctttaaaaggtttaTTTGCTACATAAACATAAAACACTTTTTATTTGA
TAGTtcttaaaggccggtctccacttgcgcgcgctgtgaTTTCACTTTTG
AATGCTACATGCtattgatcaaaagaaaaatgaaacaatttcaTGGGCGC
AATCTGACGTAAcggattgaaaaaattgaaatgtattcaacttttttttt
ccaagcaaaaatgtACCAAAAGGTGAGAACGCAGCACgggcaagtggaga
ccggccttaaaaaaATTACTATGACCGTAGTGCAAAGGTAGAAATTCCGg
gaaatggtacttgatgctcaTTTGCTAAGTACTCAGTAattagatagcta
tcgaaagaggagccttttgATCGCCTGCGACCACGGTCGCGCAGACTTTC
TTACcttattggccttttttatgCTGGCCCTAATAAGCACCGTCTCTTAT
TAAGCCAAAGCTTTTAGCCGGATCCTCATTAATTCCCGATCCCTTACGCC
GACCCTTATTACGCAAACGACGAAAAAATACTGCTAATAAGGGCTGGCAT
AAAAAGGCCGGTATTAAGGTATTTATAAAAATACTACGGTGATTCTTACC
ATTTTTCACATCTCTGTAGAGCGGAACAAGAACTATTACTACGGCGATCC
TCATCTTACGGCGACGACAAATCGAAGAATCGTAAATCGCTATTCCGTCG
CTCCAAGAAAGGTTCTTCGCATCACGCTATCAATCATTCTCGCGAGAGTA
GTGATTCCAaagctgaaatcgaaagtacgGTTAGCGGTGGCACGTCCTTT
GTTTTCATATCAGGTAGGTTATCTAAACTCATTATTATCCTTTTTGAAAC
TGCATACTTTACATCGAGTTTTTCTTTAGGTTTTCATTccttgagtttaa
agcccgaaaagctagagtagaatctctaacctttacAGGCAAAAAAAGAT
GAATGCGCCGCAATTATGACGACGGGTTGTATCTAGCAGTACCTTTGTTT
TTGATGACTGCATTCTTTAAAATCTaccgatagattttactttcaatccg
gtgtttgtgtaaaaaccacgtgTGGGCGTTCTGGATTGGAATtaaatggc
ttcatttccctTCCGGAGTCTaaagtctagcccttcgggctttgaACTCT
ATGTTTTCATTATCTTTATCTGTTATTTAGCACAGTGAACTTTTTGTTTT
GTACTATTATCAAACACTCACCATAGCGACGTTAAGTTTCAATAGAGTAG
AGACGGACGGGTTTCTGCACACTATGGTATATTCCACAGGCTTACCCTCG
CACTGCGCAAATTagtttactcaaaatttatcttcCATTAGGCCCGGCGA
ATGGCGAATTTTGCCTgtccaaggcacgaaaaaattCCAATTCGCCGGTT
TAAAATTTCGGTTCGCTGCCTCAAGTACATATTCACGCCAAACAACACAC
ACTGTGCTTTCTAAGTATTCACCGGCCTCGAATCTAGAGTTCGTCGGAGT
TAATTTTCCATTCATCAGCCTATCAAGAACAAAACAAATCCTTGTAATGA
GGGGGAAAAGTGTATGTTTTTTATACATCAAACTTTATTAGAGAGTGTCT
AGTTATAgagatttttttcttaacctttttcaGANATATTAAGTTcggaa
cattttaaagctttttggactctaaaacaccaaattcCTTTAGGTAAATG
GACAAAGAGGAAGTCgctaaatggtgaaaataagaccatttaagaccatt
tttaggcttaaaacaaaactcaaaaagttaagaacatccgaaagctacAC
AAATTCATTCTTCGCGCCATTGAATACGTAGCATCAAAATTGTTTATAAA
TGTTTACATAATTTTAACAGTGTTTTAAGCTGaggttcattttatttttt
tcctggtCCTCACTTGTATATTTCCTTATACCATTTATCATTCAGGATAT
CGCAAAGCCCAAACACAAGCCAACGATTCTTTCTACGTCCGCGCTCAATT
CGATCGTTTCCCGCATGGGAAAGGAGAGCTTAGTTTCAGGAAAGGAGACA
TCCTTCACGTGACCGAAACTTTTTACAAAGGACAGTTGGGTGTCTGGAGA
GCTAGTATTGTCAATGATAATGAAACGACAAAACCTTCGAGCGGAAAGTT
GACGAAAGGAAAAATTCCAAGCAAAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073682-exon-scaffold_97-1491911889:871516..871538 | TCONS_00073682-exon-scaffold_97-1491911889:871516..871538 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1510915933:871516..871538 | TCONS_00073682-exon-scaffold_97-1510915933:871516..871538 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1575043694:871516..871538 | TCONS_00073682-exon-scaffold_97-1575043694:871516..871538 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1491911889:873808..873896 | TCONS_00073682-exon-scaffold_97-1491911889:873808..873896 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1510915933:873808..873896 | TCONS_00073682-exon-scaffold_97-1510915933:873808..873896 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1575043694:873808..873896 | TCONS_00073682-exon-scaffold_97-1575043694:873808..873896 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1491911889:874795..874895 | TCONS_00073682-exon-scaffold_97-1491911889:874795..874895 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1510915933:874795..874895 | TCONS_00073682-exon-scaffold_97-1510915933:874795..874895 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1575043694:874795..874895 | TCONS_00073682-exon-scaffold_97-1575043694:874795..874895 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1491911889:875490..875592 | TCONS_00073682-exon-scaffold_97-1491911889:875490..875592 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1510915933:875490..875592 | TCONS_00073682-exon-scaffold_97-1510915933:875490..875592 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1575043694:875490..875592 | TCONS_00073682-exon-scaffold_97-1575043694:875490..875592 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1491911889:880611..880844 | TCONS_00073682-exon-scaffold_97-1491911889:880611..880844 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1510915933:880611..880844 | TCONS_00073682-exon-scaffold_97-1510915933:880611..880844 | Clytia hemisphaerica | exon |
TCONS_00073682-exon-scaffold_97-1575043694:880611..880844 | TCONS_00073682-exon-scaffold_97-1575043694:880611..880844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_97 | supercontig | scaffold_97:871516..880844 + |
Blast
BLAST of TCONS_00073682 vs. Swiss-Prot (Human)
Match: DLG5 (Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4) HSP 1 Score: 89.7373 bits (221), Expect = 2.780e-20 Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 196 GDQILKYNDKDMGNITLEEAILELGKHTEVSDLQVQYNPPGYRKAQTQANDSFYVRAQFDRFPHGKGELSFRKGDILHVTETFYKGQLGVWRASIVNDNETTKPSSGKLTKGKIPSK 546
GD IL+Y D+ N T+EE +E+ K + L+VQY P + KA+ DSFY+RA +DR + ELSF+K DIL+V +T +G G W A +++N + K+ +G+IPSK
Sbjct: 1544 GDLILEYGSLDVRNKTVEEVYVEMLKPRDGVRLKVQYRPEEFTKAKGLPGDSFYIRALYDRLADVEQELSFKKDDILYVDDTLPQGTFGSWMAWQLDEN------AQKIQRGQIPSK 1654
The following BLAST results are available for this feature:
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