TCONS_00073676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073676
Unique NameTCONS_00073676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073676 ID=TCONS_00073676|Name=TCONS_00073676|organism=Clytia hemisphaerica|type=transcript|length=1053bp
ttaaggaaaaaacaaaaaagataaaaaaaaaaaaatagaaaaccaaacaa
aagaatatttttaatgaaCCATTGAAAACCACATGGAACAAATTATTGAG
GGTTTAGATAATGAAGTTGCActtctacttttctttacaacaaccatcat
tgcattggttGTACCTTTATATGTAGCTCGAATATTTTATCCTCGCCAAT
CAAGAACAAGAAGTCAAGCTCAATCTAGTGATGCCACTGTTGATAGTAGT
AATCAGAATGAGAGACCTTCAGAGAATATCAGTACAAACCAAACTGAATC
TCCACCCTCAAGTACCAATTTAGCTTCTGAAAAGCAACCCTTGGATTTTC
CGCCAACAATATCAAGGCCTTCAGAAACAATATCATCAGATAGACCAACT
ACATCAGCAAATTCACAAGAAACAAACACAAATACTCAAAATACAAGTAG
CCCTAGGGCTGAGCAAGAAGAATTTCTATTGAAAGTCAAAGTACAGGAAT
CAAATTATGAACATTTTATAAACAAATCATACACATTACTTGAATTAAAA
AGgaaattctTCCCAAGGGAACTTGAAGAAGGAAAACAGATTCGTTTTGT
GTATGCTGGTAAAATATTAATTGGTGATCAACAAAAAATAGAGACATTTG
GTATAAATAAACCCACTGTGGTTCAATGCGTCATATCAGAACCTAACTCC
AATACCACAACTCCTGGGCAGCCGCAAGGTGGTGGTGCACCACTGCAAGA
TACAGATTTGGACTTATCAATGGTAATGTATATTATGTATGGAATTTTAT
TGTTGAGTTCGTGGAgtatgatgtttttgtttgaagatTGGTTTTCCAAT
ATGGGAATATTGCTGTTATCAATGCTATCagtttttggatattttttgcT
ACTGTGACGTAAGAAAATGTGATGGTGTTTGGTTTAAAATGTTCCTCTGT
CTCAGATGGATTTCCGTCTCAGCAAGATGTGAAGAGAGAGAGGCTTTTCC
ACCCTTAGAATTTAGAACAATctagcaaaatatttaaaatctgggCAAAT
TTG
Run BLAST on NCBI

protein sequence of TCONS_00073676-protein

>TCONS_00073676-protein ID=TCONS_00073676-protein|Name=TCONS_00073676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MEQIIEGLDNEVALLLFFTTTIIALVVPLYVARIFYPRQSRTRSQAQSSD
ATVDSSNQNERPSENISTNQTESPPSSTNLASEKQPLDFPPTISRPSETI
SSDRPTTSANSQETNTNTQNTSSPRAEQEEFLLKVKVQESNYEHFINKSY
TLLELKRKFFPRELEEGKQIRFVYAGKILIGDQQKIETFGINKPTVVQCV
ISEPNSNTTTPGQPQGGGAPLQDTDLDLSMVMYIMYGILLLSSWSMMFLF
EDWFSNMGILLLSMLSVFGYFLLL
Run BLAST on NCBI

transcript from alignment at scaffold_97:717853..719303+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073676 ID=TCONS_00073676|Name=TCONS_00073676|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_97:717853..719303+ (Clytia hemisphaerica)
ttaaggaaaaaacaaaaaagataaaaaaaaaaaaatagaaaaccaaacaa
aagaatatttttaatgaaCCATTGAAAACCACATGGAACAAATTATTGAG
GGTTTAGATAATGAAGTTGCActtctacttttctttacaacaaccatcat
tgcattggttGTACCTTTATATGTAGCTCGAATATTTTATCCTCGCCAAT
CAAGAACAAGAAGTCAAGCTCAATCTAGTGATGCCACTGTTGATAGTAGT
AATCAGAATGAGAGACCTTCAGAGAATATCAGTACAAACCAAACTGAATC
TCCACCCTCAAGTACCAATTTAGCTTCTGAAAAGCAACCCTTGGATTTTC
CGCCAACAATATCAAGGCCTTCAGAAACAATATCATCAGATAGACCAACT
ACATCAGCAAATTCACAAGAAACAAACACAAATACTCAAAATACAAGTAG
CCCTAGGGCTGAGCAAGAAGAATTTCTATTGAAAGTCAAAGTACAGGAAT
CAAATTATGAACATTTTATAAACAAATCATACACATTACTTGAATTAAAA
AGGTAAAGTATAaattaattgttttttctttgtttttattctaATAATAG
GGGATTGTAATTCAAGCCTATAAATTCTATACCATGCACTATTGTCTCTC
ATACAAACTTATCTTCCTTaggatttttggaaaattccctATTCTAAAGT
TTTTGTGCTTTGTGACTCAATTTagcaaaacttgtaaaaattaatccact
tcgAATTTCATCCAGGTAACTCTTTCCAGTTCTCACTaatccaaatcttt
ttttggaGCACATTATCACTACAGAAACTCTGCATAACTTCAAAATTCAT
AATAACACTTAAAATTCCTTTAAAAATTGATCGAAAATTAAATAATGAAA
AGAATGTTGTATGCCTTCATACTTATCTttctatttatttaatttttaag
gaaattctTCCCAAGGGAACTTGAAGAAGGAAAACAGATTCGTTTTGTGT
ATGCTGGTAAAATATTAATTGGTGATCAACAAAAAATAGAGACATTTGGT
ATAAATAAACCCACTGTGGTTCAATGCGTCATATCAGAACCTAACTCCAA
TACCACAACTCCTGGGCAGCCGCAAGGTGGTGGTGCACCACTGCAAGATA
CAGATTTGGACTTATCAATGGTAATGTATATTATGTATGGAATTTTATTG
TTGAGTTCGTGGAgtatgatgtttttgtttgaagatTGGTTTTCCAATAT
GGGAATATTGCTGTTATCAATGCTATCagtttttggatattttttgcTAC
TGTGACGTAAGAAAATGTGATGGTGTTTGGTTTAAAATGTTCCTCTGTCT
CAGATGGATTTCCGTCTCAGCAAGATGTGAAGAGAGAGAGGCTTTTCCAC
CCTTAGAATTTAGAACAATctagcaaaatatttaaaatctgggCAAATTT
G

Coding sequence (CDS) from alignment at scaffold_97:717853..719303+

>TCONS_00073676 ID=TCONS_00073676|Name=TCONS_00073676|organism=Clytia hemisphaerica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_97:717853..719303+ (Clytia hemisphaerica)
ATGGAACAAATTATTGAGGGTTTAGATAATGAAGTTGCActtctactttt
ctttacaacaaccatcattgcattggttGTACCTTTATATGTAGCTCGAA
TATTTTATCCTCGCCAATCAAGAACAAGAAGTCAAGCTCAATCTAGTGAT
GCCACTGTTGATAGTAGTAATCAGAATGAGAGACCTTCAGAGAATATCAG
TACAAACCAAACTGAATCTCCACCCTCAAGTACCAATTTAGCTTCTGAAA
AGCAACCCTTGGATTTTCCGCCAACAATATCAAGGCCTTCAGAAACAATA
TCATCAGATAGACCAACTACATCAGCAAATTCACAAGAAACAAACACAAA
TACTCAAAATACAAGTAGCCCTAGGGCTGAGCAAGAAGAATTTCTATTGA
AAGTCAAAGTACAGGAATCAAATTATGAACATTTTATAAACAAATCATAC
ACATTACTTGAATTAAAAAGgaaattctTCCCAAGGGAACTTGAAGAAGG
AAAACAGATTCGTTTTGTGTATGCTGGTAAAATATTAATTGGTGATCAAC
AAAAAATAGAGACATTTGGTATAAATAAACCCACTGTGGTTCAATGCGTC
ATATCAGAACCTAACTCCAATACCACAACTCCTGGGCAGCCGCAAGGTGG
TGGTGCACCACTGCAAGATACAGATTTGGACTTATCAATGGTAATGTATA
TTATGTATGGAATTTTATTGTTGAGTTCGTGGAgtatgatgtttttgttt
gaagatTGGTTTTCCAATATGGGAATATTGCTGTTATCAATGCTATCagt
ttttggatattttttgcTACTGTGAATGGAACAAATTATTGAGGGTTTAG
ATAATGAAGTTGCActtctacttttctttacaacaaccatcattgcattg
gttGTACCTTTATATGTAGCTCGAATATTTTATCCTCGCCAATCAAGAAC
AAGAAGTCAAGCTCAATCTAGTGATGCCACTGTTGATAGTAGTAATCAGA
ATGAGAGACCTTCAGAGAATATCAGTACAAACCAAACTGAATCTCCACCC
TCAAGTACCAATTTAGCTTCTGAAAAGCAACCCTTGGATTTTCCGCCAAC
AATATCAAGGCCTTCAGAAACAATATCATCAGATAGACCAACTACATCAG
CAAATTCACAAGAAACAAACACAAATACTCAAAATACAAGTAGCCCTAGG
GCTGAGCAAGAAGAATTTCTATTGAAAGTCAAAGTACAGGAATCAAATTA
TGAACATTTTATAAACAAATCATACACATTACTTGAATTAAAAAGgaaat
tctTCCCAAGGGAACTTGAAGAAGGAAAACAGATTCGTTTTGTGTATGCT
GGTAAAATATTAATTGGTGATCAACAAAAAATAGAGACATTTGGTATAAA
TAAACCCACTGTGGTTCAATGCGTCATATCAGAACCTAACTCCAATACCA
CAACTCCTGGGCAGCCGCAAGGTGGTGGTGCACCACTGCAAGATACAGAT
TTGGACTTATCAATGGTAATGTATATTATGTATGGAATTTTATTGTTGAG
TTCGTGGAgtatgatgtttttgtttgaagatTGGTTTTCCAATATGGGAA
TATTGCTGTTATCAATGCTATCagtttttggatattttttgcTACTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045750XLOC_045750Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073676-proteinTCONS_00073676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073676-exon-scaffold_97-1491911889:717853..718404TCONS_00073676-exon-scaffold_97-1491911889:717853..718404Clytia hemisphaericaexon
TCONS_00073676-exon-scaffold_97-1510915933:717853..718404TCONS_00073676-exon-scaffold_97-1510915933:717853..718404Clytia hemisphaericaexon
TCONS_00073676-exon-scaffold_97-1575043694:717853..718404TCONS_00073676-exon-scaffold_97-1575043694:717853..718404Clytia hemisphaericaexon
TCONS_00073676-exon-scaffold_97-1491911889:718803..719303TCONS_00073676-exon-scaffold_97-1491911889:718803..719303Clytia hemisphaericaexon
TCONS_00073676-exon-scaffold_97-1510915933:718803..719303TCONS_00073676-exon-scaffold_97-1510915933:718803..719303Clytia hemisphaericaexon
TCONS_00073676-exon-scaffold_97-1575043694:718803..719303TCONS_00073676-exon-scaffold_97-1575043694:718803..719303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:717853..719303 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
75.0329	76.1203	96.474	97.5045	40.7579	30.6396	43.2343	42.4992	23.3079	25.6237	18.3977	17.0491	10.7073	10.1615	14.6556	14.242	16.8823	18.3711	10.8136	12.812	14.6718	14.0947	26.3154	26.9042	13.4943	15.2656	14.2944	9.71914	17.0294	13.2622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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