TCONS_00073675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073675
Unique NameTCONS_00073675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073675 ID=TCONS_00073675|Name=TCONS_00073675|organism=Clytia hemisphaerica|type=transcript|length=781bp
TGGACGTCAAATCCTGAAAAAATTGCTTGTTCAATGTTCAATGATACCTT
CAAAATCATGATCATCTACGCTTGCCCAAAAACTTTGTATCAACAATTTA
TGAATGCCTTTGTGACATTACAAGGAGGTGGTCAGTCAAAGCAGGAATTG
GTTTTGGAAGGAAATGAACAATGGCGTGAACTTAAAAATGATAAAGACAA
AGTGGAGTCAATGATTGATAAAGCTAAGAAAGTGAAGACAAGGAATGctc
ctaaaaagaaaaaaacaaagaaacaagaACCATCCTGCCCTGACGGGGTT
TACAAGAACCCAACAACATTGTATCAAAAATTTGTCAACACATATGTCTT
AACAGAGGGTAAGGATAAATCAAAGCATGATGCCTGTTTAGAGGCTAACA
ATAGATGGAAAGAAATTAAAGACAATAAAGCTCTAGTTGAACAGCTTGTT
GATAATTCTTAATTATATTCTGTTGTGCTTTCAAATATTATGGGGAGGAT
GAACTTGATATATTTATTACATTTATTAAAAgcagattttaatttttcac
gATTTGTCACAAAACTTAggagaatttatttttttctgttttttttttgt
tttttttcttctgtttatAAATTTTAGTATtaagtgtttttataatttta
taaacttttaagattttacttTGTATGTATGAAATTGTAACTTGTAATGT
ATGTAGGATTTATTAAGATTtgcacaaaaattaaatctcCAAGTTCTCCT
TATTATCGAGTTTTATGTATCGAAGGATATC
Run BLAST on NCBI

transcript from alignment at scaffold_97:709698..717488+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073675 ID=TCONS_00073675|Name=TCONS_00073675|organism=Clytia hemisphaerica|type=transcript|length=7791bp|location=Sequence derived from alignment at scaffold_97:709698..717488+ (Clytia hemisphaerica)
TGGACGTCAAATCCTGAAAAAATTGCTTGTTCAATGTTCAATGGTATTGT
TGTCAGATTTCTTTATAAAATTCTTCTTCCATTGTGTTTCCAGAGGGGGT
TAATCTAAAGAATCCttcatttactaaaaatagacagaAAAACAACATAT
TTTGCTGTCCACTTCCTTCCTCGTCGCGACTCAGTCGGTTTGTTGTCCAC
CCCTGCACATTATTCATTCATCGCTCTTCATTTATCACAGTTTTTAAATA
CATATGGTTAAAAGCCAGTTTGAAGAGGGTGGCACGTTTGCTCGAGATCT
TGAAGTGCACAACAACTCTGAAaaaggccaggcccaattgatagtttggt
tcgtgtcctccgaccgactctaaatttttgagaaaaagtggtTCACTTTG
AGTCAGAAAAATTCTACCTTCTTTTCACATGATAACAACTATCTCTGCGG
TTCTTTTTTAACTGActgctttgatttttttataaacaacatCCACTTCG
CACACAGAAAATGTCCCGGTGTAACCCGTACTTAAAAACGAGAGTCACAG
CTGTATTACTTTAAGCACACGCCGCGAACGCCTTAATCTCCAACTAGAAG
TTATCTTGCGATCGCGGCGCGTGCCTTTGTGGATCCGGGCTTTAGGCTAG
CAGGGAGTCACAGCAGTATTCCTTTAAGCACACGCAGCGAACGCCTggag
gaatttcaaaaattgaggtttttggtgggaaaatgaaaaaaaggttccaa
ttttagctaccgaccgaccgaccgacccatttttcaaagcttctaNTgcg
ttcgactggttcgatcgtcgattccgttcgattgagatcgtctggttaag
ttcgatcaatgggtttcggttcgatcagttcgataaaccaattttgttcg
acaagtttgtgctgctccgccaccgtatattagcttgNAAGTGAGTGcag
gtgcaaaattttaggttttaagccagacccgatcaatcgaacttgtcgaa
ccaatcgaacaatcggaCTAATCGAACTctatcgaacgattaaagttcga
ttaaaaaaattattcgaactctaaaagatttctttaaagattgagtgttc
gattaagtccagacgatctcaatcgaacggaatcgacgatcgaaccaatc
gaaccaaatcgaacgcaatcgaccgattgaaattcgattgtcgaacgcNg
ttttcaaagccaaattcggaatgtaaatcgggaaattacctacaataacg
gattacacacatttcctgtatccttttagcgccagaggcggtttgttgaG
GCGTAGTATTCCACCACTCGGCCGCGCacgaaatcgcaacagaggggcta
cggactttattcTGGATAGAAAAATGTCCGGGTACAATAAatgtcaagct
gttaagtccgggaactgtcgaaatggcaatcgcgtgccaggacaaagttt
ttgctaTGAGGATTTactatcatcgaactaatcgaactttttactgaccg
aattaatcgaactgctattgcttcaaaaattgtgagtgttcgattaggtt
cgactaatttttttaatcgaactttaattgttcgatagagagttcgatta
gttcaattgttcgattggttcgacaagttcgattgatcaggTCTGGTTTA
AGTAGGGTGgtcagtcgaaatttcaaactgATTTCTGAGGCTTGTAACAT
GGTTTTTCTGAAAgtactcaaaaaatgcaaaaaaaatgaggggtcataga
gCTCCTGGAAAAAAACGGTTCCCGAGATATTGCAATTTTTGTACCTGAGA
AATTAGCGTTTTTGCACAAAATTTTCAGGACAGATAAAAATAtggaaaag
ctttcaaaaaagttaaatattgaAGTTTTGTTAAGTTGCGAAGGTTtgag
tattttacagaccagtcagGTGCAAGTGCAGATGGTTTTCTAACCTCAAG
TGCAGAGTTCTGCTATTTTCCCCTCAAGTTCAGCTAATTTTAGCAGcttt
ttgcctttttgggccaatttccgAGGTATATAGGTGCACCTATTCCAGAC
CAAAATTTACCAGGTGCGCTCATCCACGATCCAGTGCAGAACTATATATA
CttgatatttccaaatttttcctaGAGTGCGTGCAGCCTcgccatactct
gcaaactgtGTTAACGAGAAATTACACATGCGTGTtataatgggccattc
caggaaaaaatattatcccctaaacagtgcgtcacaaacagcgatatttc
gatcgcacagaaacgcttcaaaacaccagcttttttggagttttgtcccG
TTTACCCAAACGTTTCAATCTtgcgtaggcttaggggtcaagactagaac
ccccaatacgaaacatttgcctgaccgaaaaaaaatcatcatcatcaatt
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNTGACGTCACcactaaaattaaaaattgaaatt
aggaatttattgaatatttccctaatgaagtatcaaactttttgttgttt
tttgtaattattataaattcataatttttaaatactattttttgaaagtc
aaaggacaatgaaagcgaatttaagctgattgggtggatattgggtggac
gggcgttttgcacgtttcGAGATCGGAGATTAAAcaagagtaaaagacgg
gggcatcttagtatgtaatattaattcattggttttttttgttttttttt
cgcgaatgaaaaatgaatttttgatttttgaattaaggaaacaTAATATA
ATATACTATATtagattgtcaatgccaaaagatatttctttactttacga
ataatctgctgtgttgctttgccacttacccccggattgttttagtaggc
acttcggtcacgtaaataaaaacatgtgtatatgttgaagccgactgtgg
actgaacaaaattgcaattacataaattattgtggaagtgaacgctttag
acgaatgtttgggaaatcaaaaagacaacttttgtgagaatgttgagttt
tgcttatatggctgtttgtgacgcactgctAGATGGACAACATCAAtcct
aaaaataaattttggcatgGAATTCCAGTCAAACTTTAGAGAGAAAGTAT
CAGAATTCCATGAATATTActtaatacaccgtttaggagtctcgctatct
ccACCGTGTTCCACGGAAAGGGGTAGGTAAAAATGCACACTTTaatactg
tggaaggttagaggaatgtaaacattgtcaatttttttctttcctttaaa
gaaaatgatttagatatttgaacatgatatcaatgataactTTATGGATC
TTTCCTGAAAAtctcacaaaaattcatctagaggaaaagaagttatgatt
agaAGGAGTTCTTTatctaccatttctctgctagGTTTCCTTACAAGAAC
CAAAATTTTACCTAtcgttttttttaagggaaagagcagtcgctaaaatc
aaaacaatggaaaattgtttgaacACTTGCGCAGTTGACACTACTAAACA
GTGTATTTTACATATcaaagtattggaattccatgatttttttaggttac
agtatgtagattgcattcaaaaatagaaccccaaaaagtgaggttttcaa
tcaCAGCCACTTTTTAGCCCACAGCCTGATATTCTTGTGGCTGCTGTGTA
GTACAAAATTCtataaaataaggaaattgatgagctttccaaaaatgtgg
ctacctttgaagttgagtgattcagtcttgaaatataagatgGCAAAGTG
AGGGCAGGTTTTGTGGCTGTATGTGAGCCACATACTCAAcgggttggctt
atatgtgctgtcctgctttaagacttcaatattttttaaccgtttttctt
ggaattggtagtttgaggtctgataaagatactNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCTGACACAATacagtgttattttaagaaaaagtgtacattttgtggctg
caaataccattttttgtacataaaaCCTTCTGAGCTGTTACATATAAGTA
TCAGTTGGTATTTTTAGGGTTGGCTCctgtgctgtcctgctttaagactt
caatattttttaaccatttttcttgaatttggtAGTTTAATGTcttataa
agatacttatgggtttaatttgtggctgcaggattttcaatgggcttaaa
atgtggcttcaatcaaagcatatatgaaaaaaatcgtcaactttGAGCTG
CAATTCTAGCCCAGTGGCCCAATGattttggttccatttttgatattttg
tggataaacccttttgctacgagtttcatctgaaaaaaatgNCTAGATAT
CAGGGCTAGAAAATAGGCTAGTCctatcgaaatctgcaacagaaacaaaa
gtggtctcttctactgactTTTTCTACTAAAatctcaaatattttcattt
tgaagaattagtgcaaaattttttattgctttATGAAGTgggggattttg
aaaattttctatgtttaattttttgcacaaacttTTGTAACTATGGGCCA
GCACCCTGTTGCTACGatattggcttgaaatcgaaagtgaaaccactgaa
aacaaaaaatcagcCCCCACTCTAAAttccgtaatcttgatataggagtt
ttgGACTATACTGCTTGACTTGCAACCAAAAAATGCGCtccaaaaccttt
ttttttatcttagagttaagatttttttttaattgaactttaatcgttcg
attagtttgattgtttGTTTGGTTCGATTGATCAGGTCTGTTGTATTTGA
ATGTATTCGATTTGTTCTGTATTGTCTGGAAAGGTTTGGGTTATGGAATT
CTGTCTCGCAATGCATCTTGCCTTTGAATCCAAGCTCAAGATTttagtaa
aaacaaaaattacctcaacatactgtcaactgctctaacttgggacgatt
ggtcaaaacatgggactgttgatatctggcctgtattttcacttactgtt
aaatcactttgacaacaaatttgttttgataactccacaaAGTTTATCgt
tcatactttctgtcataacatgtcacaataacctTCAATGATAGCGCTTT
TTAacccttttaaatttttttgttttcattcaaaatgactggacgccaat
tggagaattagagaacgcctgccGCCGCCTgtgaaagtttatgcttgctt
aattttgctatttttttaccttgcaaaagtttctgcttgcaaaaagtttg
tacgtctaaagtaatcaacttaccataagaagtttttctgaaaagtttaa
aaactactaaaaaccacattaAAACATAAGCCACAAAAACGTCCAGCCAT
TTTGTCAATAATGAATCTGTTTTAGAATTTTGTGTTTGTTCCATTAGTGA
GGGtcaatgttcattttttttgaaattttaaaacttcATTTTCACCATAT
GTTTACTTTTACTATTTGAACTAAACTAATTTTTTAGACTCTTTAATATA
CAGATACCTTCAAAATCATGATCATCTACGCTTGCCCAAAAACTTTGTAT
CAACAATTTATGAATGCCTTTGTGACATTACAAGGAGGTGGTCAGTCAAA
GCAGGAATTGGTTTTGGAAGGAAATGAACAATGGCGTGAACTTAAAAATG
ATAAAGACAAAGTGGAGTCAATGATTGATAAAGCTAAGAAAGTGAAGACA
AGGAATGctcctaaaaagaaaaaaacaaagaaacaagaACCATCCTGCCC
TGACGGGGTTTACAAGAACCCAACAACATTGTATCAAAAATTTGTCAACA
CATATGTCTTAACAGAGGGTAAGGATAAATCAAAGCATGATGCCTGTTTA
GAGGCTAACAATAGATGGAAAGAAATTAAAGACAATAAAGCTCTAGTTGA
ACAGCTTGTTGATAATTCTTAATTATATTCTGTTGTGCTTTCAAATATTA
TGGGGAGGATGAACTTGATATATTTATTACATTTATTAAAAgcagatttt
aatttttcacgATTTGTCACAAAACTTAggagaatttatttttttctgtt
ttttttttgttttttttcttctgtttatAAATTTTAGTATtaagtgtttt
tataattttataaacttttaagattttacttTGTATGTATGAAATTGTAA
CTTGTAATGTATGTAGGATTTATTAAGATTtgcacaaaaattaaatctcC
AAGTTCTCCTTATTATCGAGTTTTATGTATCGAAGGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045749XLOC_045749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073675-exon-scaffold_97-1491911889:709698..709740TCONS_00073675-exon-scaffold_97-1491911889:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1510915933:709698..709740TCONS_00073675-exon-scaffold_97-1510915933:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1575043694:709698..709740TCONS_00073675-exon-scaffold_97-1575043694:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1491911889:716751..717488TCONS_00073675-exon-scaffold_97-1491911889:716751..717488Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1510915933:716751..717488TCONS_00073675-exon-scaffold_97-1510915933:716751..717488Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1575043694:716751..717488TCONS_00073675-exon-scaffold_97-1575043694:716751..717488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:709698..717488 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202706	0	0.740533	0.454824	137.619	101.396	98.1732	98.0412	57.5506	52.3791	38.4487	30.104	22.2693	16.8372	20.8442	14.384	40.225	36.9452	13.9261	21.6271	32.9392	29.7283	10.7318	13.4246	16.3837	23.5574	33.7689	23.7068	12.1146	8.24728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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