TCONS_00073675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073675
Unique NameTCONS_00073675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073675 ID=TCONS_00073675|Name=TCONS_00073675|organism=Clytia hemisphaerica|type=transcript|length=781bp
TGGACGTCAAATCCTGAAAAAATTGCTTGTTCAATGTTCAATGATACCTT
CAAAATCATGATCATCTACGCTTGCCCAAAAACTTTGTATCAACAATTTA
TGAATGCCTTTGTGACATTACAAGGAGGTGGTCAGTCAAAGCAGGAATTG
GTTTTGGAAGGAAATGAACAATGGCGTGAACTTAAAAATGATAAAGACAA
AGTGGAGTCAATGATTGATAAAGCTAAGAAAGTGAAGACAAGGAATGctc
ctaaaaagaaaaaaacaaagaaacaagaACCATCCTGCCCTGACGGGGTT
TACAAGAACCCAACAACATTGTATCAAAAATTTGTCAACACATATGTCTT
AACAGAGGGTAAGGATAAATCAAAGCATGATGCCTGTTTAGAGGCTAACA
ATAGATGGAAAGAAATTAAAGACAATAAAGCTCTAGTTGAACAGCTTGTT
GATAATTCTTAATTATATTCTGTTGTGCTTTCAAATATTATGGGGAGGAT
GAACTTGATATATTTATTACATTTATTAAAAgcagattttaatttttcac
gATTTGTCACAAAACTTAggagaatttatttttttctgttttttttttgt
tttttttcttctgtttatAAATTTTAGTATtaagtgtttttataatttta
taaacttttaagattttacttTGTATGTATGAAATTGTAACTTGTAATGT
ATGTAGGATTTATTAAGATTtgcacaaaaattaaatctcCAAGTTCTCCT
TATTATCGAGTTTTATGTATCGAAGGATATC
Run BLAST on NCBI

transcript from alignment at scaffold_97:709698..717488+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073675 ID=TCONS_00073675|Name=TCONS_00073675|organism=Clytia hemisphaerica|type=transcript|length=7791bp|location=Sequence derived from alignment at scaffold_97:709698..717488+ (Clytia hemisphaerica)
TGGACGTCAAATCCTGAAAAAATTGCTTGTTCAATGTTCAATGGTATTGT TGTCAGATTTCTTTATAAAATTCTTCTTCCATTGTGTTTCCAGAGGGGGT TAATCTAAAGAATCCttcatttactaaaaatagacagaAAAACAACATAT TTTGCTGTCCACTTCCTTCCTCGTCGCGACTCAGTCGGTTTGTTGTCCAC CCCTGCACATTATTCATTCATCGCTCTTCATTTATCACAGTTTTTAAATA CATATGGTTAAAAGCCAGTTTGAAGAGGGTGGCACGTTTGCTCGAGATCT TGAAGTGCACAACAACTCTGAAaaaggccaggcccaattgatagtttggt tcgtgtcctccgaccgactctaaatttttgagaaaaagtggtTCACTTTG AGTCAGAAAAATTCTACCTTCTTTTCACATGATAACAACTATCTCTGCGG TTCTTTTTTAACTGActgctttgatttttttataaacaacatCCACTTCG CACACAGAAAATGTCCCGGTGTAACCCGTACTTAAAAACGAGAGTCACAG CTGTATTACTTTAAGCACACGCCGCGAACGCCTTAATCTCCAACTAGAAG TTATCTTGCGATCGCGGCGCGTGCCTTTGTGGATCCGGGCTTTAGGCTAG CAGGGAGTCACAGCAGTATTCCTTTAAGCACACGCAGCGAACGCCTggag gaatttcaaaaattgaggtttttggtgggaaaatgaaaaaaaggttccaa ttttagctaccgaccgaccgaccgacccatttttcaaagcttctaNTgcg ttcgactggttcgatcgtcgattccgttcgattgagatcgtctggttaag ttcgatcaatgggtttcggttcgatcagttcgataaaccaattttgttcg acaagtttgtgctgctccgccaccgtatattagcttgNAAGTGAGTGcag gtgcaaaattttaggttttaagccagacccgatcaatcgaacttgtcgaa ccaatcgaacaatcggaCTAATCGAACTctatcgaacgattaaagttcga ttaaaaaaattattcgaactctaaaagatttctttaaagattgagtgttc gattaagtccagacgatctcaatcgaacggaatcgacgatcgaaccaatc gaaccaaatcgaacgcaatcgaccgattgaaattcgattgtcgaacgcNg ttttcaaagccaaattcggaatgtaaatcgggaaattacctacaataacg gattacacacatttcctgtatccttttagcgccagaggcggtttgttgaG GCGTAGTATTCCACCACTCGGCCGCGCacgaaatcgcaacagaggggcta cggactttattcTGGATAGAAAAATGTCCGGGTACAATAAatgtcaagct gttaagtccgggaactgtcgaaatggcaatcgcgtgccaggacaaagttt ttgctaTGAGGATTTactatcatcgaactaatcgaactttttactgaccg aattaatcgaactgctattgcttcaaaaattgtgagtgttcgattaggtt cgactaatttttttaatcgaactttaattgttcgatagagagttcgatta gttcaattgttcgattggttcgacaagttcgattgatcaggTCTGGTTTA AGTAGGGTGgtcagtcgaaatttcaaactgATTTCTGAGGCTTGTAACAT GGTTTTTCTGAAAgtactcaaaaaatgcaaaaaaaatgaggggtcataga gCTCCTGGAAAAAAACGGTTCCCGAGATATTGCAATTTTTGTACCTGAGA AATTAGCGTTTTTGCACAAAATTTTCAGGACAGATAAAAATAtggaaaag ctttcaaaaaagttaaatattgaAGTTTTGTTAAGTTGCGAAGGTTtgag tattttacagaccagtcagGTGCAAGTGCAGATGGTTTTCTAACCTCAAG TGCAGAGTTCTGCTATTTTCCCCTCAAGTTCAGCTAATTTTAGCAGcttt ttgcctttttgggccaatttccgAGGTATATAGGTGCACCTATTCCAGAC CAAAATTTACCAGGTGCGCTCATCCACGATCCAGTGCAGAACTATATATA CttgatatttccaaatttttcctaGAGTGCGTGCAGCCTcgccatactct gcaaactgtGTTAACGAGAAATTACACATGCGTGTtataatgggccattc caggaaaaaatattatcccctaaacagtgcgtcacaaacagcgatatttc gatcgcacagaaacgcttcaaaacaccagcttttttggagttttgtcccG TTTACCCAAACGTTTCAATCTtgcgtaggcttaggggtcaagactagaac ccccaatacgaaacatttgcctgaccgaaaaaaaatcatcatcatcaatt ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTGACGTCACcactaaaattaaaaattgaaatt aggaatttattgaatatttccctaatgaagtatcaaactttttgttgttt tttgtaattattataaattcataatttttaaatactattttttgaaagtc aaaggacaatgaaagcgaatttaagctgattgggtggatattgggtggac gggcgttttgcacgtttcGAGATCGGAGATTAAAcaagagtaaaagacgg gggcatcttagtatgtaatattaattcattggttttttttgttttttttt cgcgaatgaaaaatgaatttttgatttttgaattaaggaaacaTAATATA ATATACTATATtagattgtcaatgccaaaagatatttctttactttacga ataatctgctgtgttgctttgccacttacccccggattgttttagtaggc acttcggtcacgtaaataaaaacatgtgtatatgttgaagccgactgtgg actgaacaaaattgcaattacataaattattgtggaagtgaacgctttag acgaatgtttgggaaatcaaaaagacaacttttgtgagaatgttgagttt tgcttatatggctgtttgtgacgcactgctAGATGGACAACATCAAtcct aaaaataaattttggcatgGAATTCCAGTCAAACTTTAGAGAGAAAGTAT CAGAATTCCATGAATATTActtaatacaccgtttaggagtctcgctatct ccACCGTGTTCCACGGAAAGGGGTAGGTAAAAATGCACACTTTaatactg tggaaggttagaggaatgtaaacattgtcaatttttttctttcctttaaa gaaaatgatttagatatttgaacatgatatcaatgataactTTATGGATC TTTCCTGAAAAtctcacaaaaattcatctagaggaaaagaagttatgatt agaAGGAGTTCTTTatctaccatttctctgctagGTTTCCTTACAAGAAC CAAAATTTTACCTAtcgttttttttaagggaaagagcagtcgctaaaatc aaaacaatggaaaattgtttgaacACTTGCGCAGTTGACACTACTAAACA GTGTATTTTACATATcaaagtattggaattccatgatttttttaggttac agtatgtagattgcattcaaaaatagaaccccaaaaagtgaggttttcaa tcaCAGCCACTTTTTAGCCCACAGCCTGATATTCTTGTGGCTGCTGTGTA GTACAAAATTCtataaaataaggaaattgatgagctttccaaaaatgtgg ctacctttgaagttgagtgattcagtcttgaaatataagatgGCAAAGTG AGGGCAGGTTTTGTGGCTGTATGTGAGCCACATACTCAAcgggttggctt atatgtgctgtcctgctttaagacttcaatattttttaaccgtttttctt ggaattggtagtttgaggtctgataaagatactNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TCTGACACAATacagtgttattttaagaaaaagtgtacattttgtggctg caaataccattttttgtacataaaaCCTTCTGAGCTGTTACATATAAGTA TCAGTTGGTATTTTTAGGGTTGGCTCctgtgctgtcctgctttaagactt caatattttttaaccatttttcttgaatttggtAGTTTAATGTcttataa agatacttatgggtttaatttgtggctgcaggattttcaatgggcttaaa atgtggcttcaatcaaagcatatatgaaaaaaatcgtcaactttGAGCTG CAATTCTAGCCCAGTGGCCCAATGattttggttccatttttgatattttg tggataaacccttttgctacgagtttcatctgaaaaaaatgNCTAGATAT CAGGGCTAGAAAATAGGCTAGTCctatcgaaatctgcaacagaaacaaaa gtggtctcttctactgactTTTTCTACTAAAatctcaaatattttcattt tgaagaattagtgcaaaattttttattgctttATGAAGTgggggattttg aaaattttctatgtttaattttttgcacaaacttTTGTAACTATGGGCCA GCACCCTGTTGCTACGatattggcttgaaatcgaaagtgaaaccactgaa aacaaaaaatcagcCCCCACTCTAAAttccgtaatcttgatataggagtt ttgGACTATACTGCTTGACTTGCAACCAAAAAATGCGCtccaaaaccttt ttttttatcttagagttaagatttttttttaattgaactttaatcgttcg attagtttgattgtttGTTTGGTTCGATTGATCAGGTCTGTTGTATTTGA ATGTATTCGATTTGTTCTGTATTGTCTGGAAAGGTTTGGGTTATGGAATT CTGTCTCGCAATGCATCTTGCCTTTGAATCCAAGCTCAAGATTttagtaa aaacaaaaattacctcaacatactgtcaactgctctaacttgggacgatt ggtcaaaacatgggactgttgatatctggcctgtattttcacttactgtt aaatcactttgacaacaaatttgttttgataactccacaaAGTTTATCgt tcatactttctgtcataacatgtcacaataacctTCAATGATAGCGCTTT TTAacccttttaaatttttttgttttcattcaaaatgactggacgccaat tggagaattagagaacgcctgccGCCGCCTgtgaaagtttatgcttgctt aattttgctatttttttaccttgcaaaagtttctgcttgcaaaaagtttg tacgtctaaagtaatcaacttaccataagaagtttttctgaaaagtttaa aaactactaaaaaccacattaAAACATAAGCCACAAAAACGTCCAGCCAT TTTGTCAATAATGAATCTGTTTTAGAATTTTGTGTTTGTTCCATTAGTGA GGGtcaatgttcattttttttgaaattttaaaacttcATTTTCACCATAT GTTTACTTTTACTATTTGAACTAAACTAATTTTTTAGACTCTTTAATATA CAGATACCTTCAAAATCATGATCATCTACGCTTGCCCAAAAACTTTGTAT CAACAATTTATGAATGCCTTTGTGACATTACAAGGAGGTGGTCAGTCAAA GCAGGAATTGGTTTTGGAAGGAAATGAACAATGGCGTGAACTTAAAAATG ATAAAGACAAAGTGGAGTCAATGATTGATAAAGCTAAGAAAGTGAAGACA AGGAATGctcctaaaaagaaaaaaacaaagaaacaagaACCATCCTGCCC TGACGGGGTTTACAAGAACCCAACAACATTGTATCAAAAATTTGTCAACA CATATGTCTTAACAGAGGGTAAGGATAAATCAAAGCATGATGCCTGTTTA GAGGCTAACAATAGATGGAAAGAAATTAAAGACAATAAAGCTCTAGTTGA ACAGCTTGTTGATAATTCTTAATTATATTCTGTTGTGCTTTCAAATATTA TGGGGAGGATGAACTTGATATATTTATTACATTTATTAAAAgcagatttt aatttttcacgATTTGTCACAAAACTTAggagaatttatttttttctgtt ttttttttgttttttttcttctgtttatAAATTTTAGTATtaagtgtttt tataattttataaacttttaagattttacttTGTATGTATGAAATTGTAA CTTGTAATGTATGTAGGATTTATTAAGATTtgcacaaaaattaaatctcC AAGTTCTCCTTATTATCGAGTTTTATGTATCGAAGGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045749XLOC_045749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073675-exon-scaffold_97-1491911889:709698..709740TCONS_00073675-exon-scaffold_97-1491911889:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1510915933:709698..709740TCONS_00073675-exon-scaffold_97-1510915933:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1575043694:709698..709740TCONS_00073675-exon-scaffold_97-1575043694:709698..709740Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1491911889:716751..717488TCONS_00073675-exon-scaffold_97-1491911889:716751..717488Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1510915933:716751..717488TCONS_00073675-exon-scaffold_97-1510915933:716751..717488Clytia hemisphaericaexon
TCONS_00073675-exon-scaffold_97-1575043694:716751..717488TCONS_00073675-exon-scaffold_97-1575043694:716751..717488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:709698..717488 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202706 0 0.740533 0.454824 137.619 101.396 98.1732 98.0412 57.5506 52.3791 38.4487 30.104 22.2693 16.8372 20.8442 14.384 40.225 36.9452 13.9261 21.6271 32.9392 29.7283 10.7318 13.4246 16.3837 23.5574 33.7689 23.7068 12.1146 8.24728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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