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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073667 ID=TCONS_00073667|Name=TCONS_00073667|organism=Clytia hemisphaerica|type=transcript|length=4187bp
attgtttATTTCTGTCTCTAAAAAAATGCAACACACTATGTTTGTAATAT
TGTatgttaaaaaaaagattttcttaaaaaataattattacaaaaacaaa
acacaagaaaaatcaaaaaaaatatttttcaaaaacaaaacataatcgac
aaagaattttaaaaatattgagggtaaaataaaatctatataCATTGTAA
CGCCGTGGTGCATACGCTGACAACACACAAACAACGGTCAAAGGTAGCCT
ACACGAGCACAAATTGGCAGAAAATCAAGTATaatctgtgtcacagaccc
actggaaaatttaatCCCTGATGGGAAAATACGCtgcaatttcaacccca
ctgggaaatcatccctatttgaaattcaattaaaaaactgcactccaaaa
ccactcCCATTGgattattttagtttgtaaGAAAAGGATTGCTATCTTTT
GTTATCCCTGaggtgggaaaaagttccaccggggctgttaTACTCCTAAT
ACttagattgggcttttccaagCGATCCAAATTAGCCTGCGCGagctagg
ctacgtcatatcttccttcgtatcgagcgtaaaactcctactcttcgggc
tatgagcactcctcttgttttgaatattgaaattctccagataaatcgca
tgcgcactgaggttttaatgaaacaatagaaagtttCGAAACccaagcca
atcagctgtgttttaaacattcttttattttaaatctctaatgataaaca
tcttttgtgaatgttgtctattatgtttaaacctattaatgagcaattcc
cggtggggtcactagtggccgcctatagcagtgcctatagaccaagagta
aggcctaaaagcctggatctgtctattgtgtagactagcgCGAGCACAAT
TTGCAGTAAATCAAACAACgaaaatggttcaaaatttCGAGTAGGTGAGC
AAATGAGATAGGTACAGTATATCGACTAGACTTTCTTATTCACCACTTAA
CACTGGAGAAAATAATCAACCTCTCTCATTTTAGGCAGTACCCTaactac
aacaacgacaatACGATATTGGTAAAAGGAAATAGGACGAGTATAACAAA
AAAATgggctctttcagaaaaaaattcattcatggagggggggggggggg
tttattatttttttcaatgatctACTCCTGGACATTTCGACTTTACACCC
CCTGCACACGCGTTTTACCCCCTGagttttaccccctggacaagcatcaa
atcGACCCACTTGACACTAAAAGTTACCCCTGGACAAATTCATCCCATGG
GCATGGCATTTTTCAGGATCTTTTcgatacccctggacaatatatcttcC
ACCTCCTATGAACGGTCTTTTTCTAGAAGAGCCCCCAATAcagttaaaac
aaaaaatacagttAAAAAActagaagaaaaataaaaaacgttaaaaaaag
ttttattgccCGGTATTATAAAAACATGGACAAAGCACTTTTTCATAGCC
AAATTGGTGAGGAAAAAATCAAGTGTACGTTTTTCATAAGATAACGCTTG
TATCCTGGCTCAAATCTTGGAAAAACTTCAGCATTGAGTTActgaatttg
caaaaaaatgcaaaaatcatGCAAAATGAATAAATTGCACCATTACACAA
GGatggccgggtagctcagtcggtagagcattcaccttacaatctaaggg
ttgtgggttcgatctcCGGTCACtgccaactcagcggatgagtagcttag
attgggtaatctactctaggcggtaagttactgggagctgagagtaggtg
tggcgctccacctcagcattcgatctcccaggtctagcgcaaatagaaaa
ggggatagactccctcactcccggctccgccgacagccaccagatgaata
tacttactttacTATAAGGATGGCAAAAGCATATTCTAGGctcaaaaatt
ttcctttggctTACGTgtacacaaaaacaaacaaaaagaccggataaaag
tttaaaagaatagaccttatcggagtttttgatttttctaaaaaggcgAT
GCGTTGTGAGATTGTTTCGAGTTTCATACAATAAAATTTCCTCGatgaat
tcctaagagatttctatcggaacaatcccacaatgcatcgcttttaaaaa
aaaatcaaaaactccgatatgatcaattattcaaatttgacCGAGTTCCA
TTCTGAACATATACAAGTGATATTGACAGATTTTACTCATACTTAAATGT
TTGTCTGCTTAAAACAAAATATTCCCACAATGCAATTCAATAATCAGGTG
TTTCTTCTTTAATTTGGTCTATAGGTATCATTCCATCaacaaaagttgaa
attttgtcTACGGCGTCGCTAGGTGGGTCCGACGGCTGGGTCTCCGCACC
CATATCTAAAAGTGTGTTTTCAAAATCACTCATTTGTATGTAGCGAGGGT
CCCCGGACCCATCTTCACCGTCGGAAAGCGGGTCTCCGTTACTTATAGGT
GACGTGACAGGGTTCTTATGTACATTATTAACATGTTTCAAATACGCCGT
CCGTGTCGGGAATGTTAGAACACAGAAATTACATTCGAATACATCTTGAA
CGTCAAAAGTCACCGTTTCACGTTTTTCATTATCTAACATGAAACTATCT
TCTAGATCctcttcttttattttaaacATAACTTGATCTAGATCCGTAAC
CGGAATTGCTTCTTTCCGTTTAAGCGGACGCCCTTTCCGTTTCGATTTGG
TCGTGCTTGATTGTCCGGACGTCTCACCTTCCGTAGCTTGATTGGCACCG
TCTGTCCGCGTTTTCGTAGAATTACGCGGTTTCTTTTTGTTAGGTTCTTT
ACAACTAATAGGTCGATCAAAAACACCATTTTGTATGTGTCTTTTATGGT
GGGAATTCAAACCCGACTTGTGGCGGAAAGGGCGGCTGCAAAACATACAT
TTATACGGAAACTCTCCAGTATGAATCAACATGTGATCGTTCAAGTGCGC
CTGCGCTAGAAATTTCCTCGAGCACACGTTACAAGTGAATTTCTTCTCTT
TACCCGAACGAAAACTTCGCCCGTGTGTAACCAAAGAACCATTTTTATCC
TTAGCTGCTTTCTCTTCCCTTAAGCTTTTCGCCACTGATTCTTCTATACT
ATTCTCCACCTCTAACACGCCATTATGATTAATCAGCGCTTTTTCGATAA
CTTCTTTACCGTGTATGTCGTCCAAGATATTTTTCGATCCACCGCTGGAG
TCGGAGGATGGTGCCCCAGTTGCGTTATAATGTCTTGGTTTGGGTCCTCT
CCTGTTCTTATCATCATAACATTGTATCCGTTCCAACATTATCCCGTTCG
CTATGTTATCAAGCGGAAAATCGACCCAGTCCCCACCCGGATGGTCACTG
ACGAAAATCCGTGCCTCCACTTGACCGACAGGGTCTAGAATATAGGCGAA
CTCCGACTTTCTCTCACGATCCGTATCACTAGTGCTTGTCGATATTCCCG
TGGTTAGATCACCGTTATCAATGACTCTGATCATGAAAATAACACGCCCG
TCCATCGTTTTCACTTTCTTGCATTGGAACTTGGCCCCCGTAGAAAATTC
AGCTCTCAACGTCTTGGAGCCAGCAAATCCTTCATGTGATTTCGATATAG
CGACCATTATTTTTGGGTCAATAACAGGTTCTGATGTTGGTATAGGGCTG
TTCATCATCTGGACGGTTTGAGATTGATCTGAAGATTGAGCCGGGATTAA
GGAAGGTCCAGGCTGGACAAAGACGGTAGGTGTCATTTGTGCAGGTTGCA
GTATCTGGATGGTCTTAGGTGGCAGGGGTCCAGCTACCGTTCCAGGAGGG
GGTGGTGCTTGGATTAGTACTGTGCCTGCTGGCAGCGCGTTTTCAAGATT
CTTCGGGAAGCGATCCGGAGAAAGAATAGCTGGTGACAGGGGGATAGCAC
CAGCTGGGAATGAAGTCATTGGCTGCATCACGTTGATGTTGTGAGGGTAC
GGTGCAATGGGGACGAAACGTTGTGTAGCTACTGTCGGTGTAACTGCTAA
AGGTGTGGTCACCATAGTTGGTGCAGACGCTAGGTGGTTGTCTTCTAGTT
TCTGACGTTTAACTTTGGGGTTATCACTTCGTTCAGAGTGACTGTATGGA
ATAGGTCCTTCAAAGACTTCGTACTTGTGGTGAAGct Run BLAST on NCBI transcript from alignment at scaffold_97:584445..588697+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073667 ID=TCONS_00073667|Name=TCONS_00073667|organism=Clytia hemisphaerica|type=transcript|length=4253bp|location=Sequence derived from alignment at scaffold_97:584445..588697+ (Clytia hemisphaerica)
attgtttATTTCTGTCTCTAAAAAAATGCAACACACTATGTTTGTAATAT
TGTatgttaaaaaaaagattttcttaaaaaataattattacaaaaacaaa
acacaagaaaaatcaaaaaaaatatttttcaaaaacaaaacataatcgac
aaagaattttaaaaatattgagggtaaaataaaatctatataCATTGTAA
CGCCGTGGTGCATACGCTGACAACACACAAACAACGGTCAAAGGTAGCCT
ACACGAGCACAAATTGGCAGAAAATCAAGTATaatctgtgtcacagaccc
actggaaaatttaatCCCTGATGGGAAAATACGCtgcaatttcaacccca
ctgggaaatcatccctatttgaaattcaattaaaaaactgcactccaaaa
ccactcCCATTGgattattttagtttgtaaGAAAAGGATTGCTATCTTTT
GTTATCCCTGaggtgggaaaaagttccaccggggctgttaTACTCCTAAT
ACttagattgggcttttccaagCGATCCAAATTAGCCTGCGCGagctagg
ctacgtcatatcttccttcgtatcgagcgtaaaactcctactcttcgggc
tatgagcactcctcttgttttgaatattgaaattctccagataaatcgca
tgcgcactgaggttttaatgaaacaatagaaagtttCGAAACccaagcca
atcagctgtgttttaaacattcttttattttaaatctctaatgataaaca
tcttttgtgaatgttgtctattatgtttaaacctattaatgagcaattcc
cggtggggtcactagtggccgcctatagcagtgcctatagaccaagagta
aggcctaaaagcctggatctgtctattgtgtagactagcgCGAGCACAAT
TTGCAGTAAATCAAACAACgaaaatggttcaaaatttCGAGTAGGTGAGC
AAATGAGATAGGTACAGTATATCGACTAGACTTTCTTATTCACCACTTAA
CACTGGAGAAAATAATCAACCTCTCTCATTTTAGGCAGTACCCTaactac
aacaacgacaatACGATATTGGTAAAAGGAAATAGGACGAGTATAACAAA
AAAATgggctctttcagaaaaaaattcattcatggagggggggggggggg
tttattatttttttcaatgatctACTCCTGGACATTTCGACTTTACACCC
CCTGCACACGCGTTTTACCCCCTGagttttaccccctggacaagcatcaa
atcGACCCACTTGACACTAAAAGTTACCCCTGGACAAATTCATCCCATGG
GCATGGCATTTTTCAGGATCTTTTcgatacccctggacaatatatcttcC
ACCTCCTATGAACGGTCTTTTTCTAGAAGAGCCCCCAATAcagttaaaac
aaaaaatacagttAAAAAActagaagaaaaataaaaaacgttaaaaaaag
ttttattgccCGGTATTATAAAAACATGGACAAAGCACTTTTTCATAGCC
AAATTGGTGAGGAAAAAATCAAGTGTACGTTTTTCATAAGATAACGCTTG
TATCCTGGCTCAAATCTTGGAAAAACTTCAGCATTGAGTTActgaatttg
caaaaaaatgcaaaaatcatGCAAAATGAATAAATTGCACCATTACACAA
GGatggccgggtagctcagtcggtagagcattcaccttacaatctaaggg
ttgtgggttcgatctcCGGTCACtgccaactcagcggatgagtagcttag
attgggtaatctactctaggcggtaagttactgggagctgagagtaggtg
tggcgctccacctcagcattcgatctcccaggtctagcgcaaatagaaaa
ggggatagactccctcactcccggctccgccgacagccaccagatgaata
tacttactttacTATAAGGATGGCAAAAGCATATTCTAGGctcaaaaatt
ttcctttggctTACGTgtacacaaaaacaaacaaaaagaccggataaaag
tttaaaagaatagaccttatcggagtttttgatttttctaaaaaggcgAT
GCGTTGTGAGATTGTTTCGAGTTTCATACAATAAAATTTCCTCGatgaat
tcctaagagatttctatcggaacaatcccacaatgcatcgcttttaaaaa
aaaatcaaaaactccgatatgatcaattattcaaatttgacCGAGTTCCA
TTCTGAACATATACAAGTGATATTGACAGATTTTACTCATACTTAAATGT
TTGTCTGCTTAAAACAAAATATTCCCACAATGCAATTCAATAATCAGGTG
TTTCTTCTTTAATTTGGTCTATAGGTATCATTCCATCaacaaaagttgaa
attttgtcTACGGCGTCGCTAGGTGGGTCCGACGGCTGGGTCTCCGCACC
CATATCTAAAAGTGTGTTTTCAAAATCACTCATTTGTATGTAGCGAGGGT
CCCCGGACCCATCTTCACCGTCGGAAAGCGGGTCTCCGTTACTTATAGGT
GACGTGACAGGGTTCTTATGTACATTATTAACATGTTTCAAATACGCCGT
CCGTGTCGGGAATGTTAGAACACAGAAATTACATTCGAATACATCTTGAA
CGTCAAAAGTCACCGTTTCACGTTTTTCATTATCTAACATGAAACTATCT
TCTAGATCctcttcttttattttaaacatAACTTGATCTAGATCCGTAAC
CGGAATTGCTTCTTTCCGTTTAAGTGGACGNTTTATTTTAAACATAACTT
GATCTAGATCCGTAACCGGAATTGCTTCTTTCCGTTTAAGCGGACGCCCT
TTCCGTTTCGATTTGGTCGTGCTTGATTGTCCGGACGTCTCACCTTCCGT
AGCTTGATTGGCACCGTCTGTCCGCGTTTTCGTAGAATTACGCGGTTTCT
TTTTGTTAGGTTCTTTACAACTAATAGGTCGATCAAAAACACCATTTTGT
ATGTGTCTTTTATGGTGGGAATTCAAACCCGACTTGTGGCGGAAAGGGCG
GCTGCAAAACATACATTTATACGGAAACTCTCCAGTATGAATCAACATGT
GATCGTTCAAGTGCGCCTGCGCTAGAAATTTCCTCGAGCACACGTTACAA
GTGAATTTCTTCTCTTTACCCGAACGAAAACTTCGCCCGTGTGTAACCAA
AGAACCATTTTTATCCTTAGCTGCTTTCTCTTCCCTTAAGCTTTTCGCCA
CTGATTCTTCTATACTATTCTCCACCTCTAACACGCCATTATGATTAATC
AGCGCTTTTTCGATAACTTCTTTACCGTGTATGTCGTCCAAGATATTTTT
CGATCCACCGCTGGAGTCGGAGGATGGTGCCCCAGTTGCGTTATAATGTC
TTGGTTTGGGTCCTCTCCTGTTCTTATCATCATAACATTGTATCCGTTCC
AACATTATCCCGTTCGCTATGTTATCAAGCGGAAAATCGACCCAGTCCCC
ACCCGGATGGTCACTGACGAAAATCCGTGCCTCCACTTGACCGACAGGGT
CTAGAATATAGGCGAACTCCGACTTTCTCTCACGATCCGTATCACTAGTG
CTTGTCGATATTCCCGTGGTTAGATCACCGTTATCAATGACTCTGATCAT
GAAAATAACACGCCCGTCCATCGTTTTCACTTTCTTGCATTGGAACTTGG
CCCCCGTAGAAAATTCAGCTCTCAACGTCTTGGAGCCAGCAAATCCTTCA
TGTGATTTCGATATAGCGACCATTATTTTTGGGTCAATAACAGGTTCTGA
TGTTGGTATAGGGCTGTTCATCATCTGGACGGTTTGAGATTGATCTGAAG
ATTGAGCCGGGATTAAGGAAGGTCCAGGCTGGACAAAGACGGTAGGTGTC
ATTTGTGCAGGTTGCAGTATCTGGATGGTCTTAGGTGGCAGGGGTCCAGC
TACCGTTCCAGGAGGGGGTGGTGCTTGGATTAGTACTGTGCCTGCTGGCA
GCGCGTTTTCAAGATTCTTCGGGAAGCGATCCGGAGAAAGAATAGCTGGT
GACAGGGGGATAGCACCAGCTGGGAATGAAGTCATTGGCTGCATCACGTT
GATGTTGTGAGGGTACGGTGCAATGGGGACGAAACGTTGTGTAGCTACTG
TCGGTGTAACTGCTAAAGGTGTGGTCACCATAGTTGGTGCAGACGCTAGG
TGGTTGTCTTCTAGTTTCTGACGTTTAACTTTGGGGTTATCACTTCGTTC
AGAGTGACTGTATGGAATAGGTCCTTCAAAGACTTCGTACTTGTGGTGAA
Gct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073667-exon-scaffold_97-1491911889:584445..587121 | TCONS_00073667-exon-scaffold_97-1491911889:584445..587121 | Clytia hemisphaerica | exon |
| TCONS_00073667-exon-scaffold_97-1510915933:584445..587121 | TCONS_00073667-exon-scaffold_97-1510915933:584445..587121 | Clytia hemisphaerica | exon |
| TCONS_00073667-exon-scaffold_97-1575043694:584445..587121 | TCONS_00073667-exon-scaffold_97-1575043694:584445..587121 | Clytia hemisphaerica | exon |
| TCONS_00073667-exon-scaffold_97-1491911889:587188..588697 | TCONS_00073667-exon-scaffold_97-1491911889:587188..588697 | Clytia hemisphaerica | exon |
| TCONS_00073667-exon-scaffold_97-1510915933:587188..588697 | TCONS_00073667-exon-scaffold_97-1510915933:587188..588697 | Clytia hemisphaerica | exon |
| TCONS_00073667-exon-scaffold_97-1575043694:587188..588697 | TCONS_00073667-exon-scaffold_97-1575043694:587188..588697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:584445..588697 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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