TCONS_00073667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073667
Unique NameTCONS_00073667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073667 ID=TCONS_00073667|Name=TCONS_00073667|organism=Clytia hemisphaerica|type=transcript|length=4187bp
attgtttATTTCTGTCTCTAAAAAAATGCAACACACTATGTTTGTAATAT
TGTatgttaaaaaaaagattttcttaaaaaataattattacaaaaacaaa
acacaagaaaaatcaaaaaaaatatttttcaaaaacaaaacataatcgac
aaagaattttaaaaatattgagggtaaaataaaatctatataCATTGTAA
CGCCGTGGTGCATACGCTGACAACACACAAACAACGGTCAAAGGTAGCCT
ACACGAGCACAAATTGGCAGAAAATCAAGTATaatctgtgtcacagaccc
actggaaaatttaatCCCTGATGGGAAAATACGCtgcaatttcaacccca
ctgggaaatcatccctatttgaaattcaattaaaaaactgcactccaaaa
ccactcCCATTGgattattttagtttgtaaGAAAAGGATTGCTATCTTTT
GTTATCCCTGaggtgggaaaaagttccaccggggctgttaTACTCCTAAT
ACttagattgggcttttccaagCGATCCAAATTAGCCTGCGCGagctagg
ctacgtcatatcttccttcgtatcgagcgtaaaactcctactcttcgggc
tatgagcactcctcttgttttgaatattgaaattctccagataaatcgca
tgcgcactgaggttttaatgaaacaatagaaagtttCGAAACccaagcca
atcagctgtgttttaaacattcttttattttaaatctctaatgataaaca
tcttttgtgaatgttgtctattatgtttaaacctattaatgagcaattcc
cggtggggtcactagtggccgcctatagcagtgcctatagaccaagagta
aggcctaaaagcctggatctgtctattgtgtagactagcgCGAGCACAAT
TTGCAGTAAATCAAACAACgaaaatggttcaaaatttCGAGTAGGTGAGC
AAATGAGATAGGTACAGTATATCGACTAGACTTTCTTATTCACCACTTAA
CACTGGAGAAAATAATCAACCTCTCTCATTTTAGGCAGTACCCTaactac
aacaacgacaatACGATATTGGTAAAAGGAAATAGGACGAGTATAACAAA
AAAATgggctctttcagaaaaaaattcattcatggagggggggggggggg
tttattatttttttcaatgatctACTCCTGGACATTTCGACTTTACACCC
CCTGCACACGCGTTTTACCCCCTGagttttaccccctggacaagcatcaa
atcGACCCACTTGACACTAAAAGTTACCCCTGGACAAATTCATCCCATGG
GCATGGCATTTTTCAGGATCTTTTcgatacccctggacaatatatcttcC
ACCTCCTATGAACGGTCTTTTTCTAGAAGAGCCCCCAATAcagttaaaac
aaaaaatacagttAAAAAActagaagaaaaataaaaaacgttaaaaaaag
ttttattgccCGGTATTATAAAAACATGGACAAAGCACTTTTTCATAGCC
AAATTGGTGAGGAAAAAATCAAGTGTACGTTTTTCATAAGATAACGCTTG
TATCCTGGCTCAAATCTTGGAAAAACTTCAGCATTGAGTTActgaatttg
caaaaaaatgcaaaaatcatGCAAAATGAATAAATTGCACCATTACACAA
GGatggccgggtagctcagtcggtagagcattcaccttacaatctaaggg
ttgtgggttcgatctcCGGTCACtgccaactcagcggatgagtagcttag
attgggtaatctactctaggcggtaagttactgggagctgagagtaggtg
tggcgctccacctcagcattcgatctcccaggtctagcgcaaatagaaaa
ggggatagactccctcactcccggctccgccgacagccaccagatgaata
tacttactttacTATAAGGATGGCAAAAGCATATTCTAGGctcaaaaatt
ttcctttggctTACGTgtacacaaaaacaaacaaaaagaccggataaaag
tttaaaagaatagaccttatcggagtttttgatttttctaaaaaggcgAT
GCGTTGTGAGATTGTTTCGAGTTTCATACAATAAAATTTCCTCGatgaat
tcctaagagatttctatcggaacaatcccacaatgcatcgcttttaaaaa
aaaatcaaaaactccgatatgatcaattattcaaatttgacCGAGTTCCA
TTCTGAACATATACAAGTGATATTGACAGATTTTACTCATACTTAAATGT
TTGTCTGCTTAAAACAAAATATTCCCACAATGCAATTCAATAATCAGGTG
TTTCTTCTTTAATTTGGTCTATAGGTATCATTCCATCaacaaaagttgaa
attttgtcTACGGCGTCGCTAGGTGGGTCCGACGGCTGGGTCTCCGCACC
CATATCTAAAAGTGTGTTTTCAAAATCACTCATTTGTATGTAGCGAGGGT
CCCCGGACCCATCTTCACCGTCGGAAAGCGGGTCTCCGTTACTTATAGGT
GACGTGACAGGGTTCTTATGTACATTATTAACATGTTTCAAATACGCCGT
CCGTGTCGGGAATGTTAGAACACAGAAATTACATTCGAATACATCTTGAA
CGTCAAAAGTCACCGTTTCACGTTTTTCATTATCTAACATGAAACTATCT
TCTAGATCctcttcttttattttaaacATAACTTGATCTAGATCCGTAAC
CGGAATTGCTTCTTTCCGTTTAAGCGGACGCCCTTTCCGTTTCGATTTGG
TCGTGCTTGATTGTCCGGACGTCTCACCTTCCGTAGCTTGATTGGCACCG
TCTGTCCGCGTTTTCGTAGAATTACGCGGTTTCTTTTTGTTAGGTTCTTT
ACAACTAATAGGTCGATCAAAAACACCATTTTGTATGTGTCTTTTATGGT
GGGAATTCAAACCCGACTTGTGGCGGAAAGGGCGGCTGCAAAACATACAT
TTATACGGAAACTCTCCAGTATGAATCAACATGTGATCGTTCAAGTGCGC
CTGCGCTAGAAATTTCCTCGAGCACACGTTACAAGTGAATTTCTTCTCTT
TACCCGAACGAAAACTTCGCCCGTGTGTAACCAAAGAACCATTTTTATCC
TTAGCTGCTTTCTCTTCCCTTAAGCTTTTCGCCACTGATTCTTCTATACT
ATTCTCCACCTCTAACACGCCATTATGATTAATCAGCGCTTTTTCGATAA
CTTCTTTACCGTGTATGTCGTCCAAGATATTTTTCGATCCACCGCTGGAG
TCGGAGGATGGTGCCCCAGTTGCGTTATAATGTCTTGGTTTGGGTCCTCT
CCTGTTCTTATCATCATAACATTGTATCCGTTCCAACATTATCCCGTTCG
CTATGTTATCAAGCGGAAAATCGACCCAGTCCCCACCCGGATGGTCACTG
ACGAAAATCCGTGCCTCCACTTGACCGACAGGGTCTAGAATATAGGCGAA
CTCCGACTTTCTCTCACGATCCGTATCACTAGTGCTTGTCGATATTCCCG
TGGTTAGATCACCGTTATCAATGACTCTGATCATGAAAATAACACGCCCG
TCCATCGTTTTCACTTTCTTGCATTGGAACTTGGCCCCCGTAGAAAATTC
AGCTCTCAACGTCTTGGAGCCAGCAAATCCTTCATGTGATTTCGATATAG
CGACCATTATTTTTGGGTCAATAACAGGTTCTGATGTTGGTATAGGGCTG
TTCATCATCTGGACGGTTTGAGATTGATCTGAAGATTGAGCCGGGATTAA
GGAAGGTCCAGGCTGGACAAAGACGGTAGGTGTCATTTGTGCAGGTTGCA
GTATCTGGATGGTCTTAGGTGGCAGGGGTCCAGCTACCGTTCCAGGAGGG
GGTGGTGCTTGGATTAGTACTGTGCCTGCTGGCAGCGCGTTTTCAAGATT
CTTCGGGAAGCGATCCGGAGAAAGAATAGCTGGTGACAGGGGGATAGCAC
CAGCTGGGAATGAAGTCATTGGCTGCATCACGTTGATGTTGTGAGGGTAC
GGTGCAATGGGGACGAAACGTTGTGTAGCTACTGTCGGTGTAACTGCTAA
AGGTGTGGTCACCATAGTTGGTGCAGACGCTAGGTGGTTGTCTTCTAGTT
TCTGACGTTTAACTTTGGGGTTATCACTTCGTTCAGAGTGACTGTATGGA
ATAGGTCCTTCAAAGACTTCGTACTTGTGGTGAAGct
Run BLAST on NCBI

transcript from alignment at scaffold_97:584445..588697+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073667 ID=TCONS_00073667|Name=TCONS_00073667|organism=Clytia hemisphaerica|type=transcript|length=4253bp|location=Sequence derived from alignment at scaffold_97:584445..588697+ (Clytia hemisphaerica)
attgtttATTTCTGTCTCTAAAAAAATGCAACACACTATGTTTGTAATAT TGTatgttaaaaaaaagattttcttaaaaaataattattacaaaaacaaa acacaagaaaaatcaaaaaaaatatttttcaaaaacaaaacataatcgac aaagaattttaaaaatattgagggtaaaataaaatctatataCATTGTAA CGCCGTGGTGCATACGCTGACAACACACAAACAACGGTCAAAGGTAGCCT ACACGAGCACAAATTGGCAGAAAATCAAGTATaatctgtgtcacagaccc actggaaaatttaatCCCTGATGGGAAAATACGCtgcaatttcaacccca ctgggaaatcatccctatttgaaattcaattaaaaaactgcactccaaaa ccactcCCATTGgattattttagtttgtaaGAAAAGGATTGCTATCTTTT GTTATCCCTGaggtgggaaaaagttccaccggggctgttaTACTCCTAAT ACttagattgggcttttccaagCGATCCAAATTAGCCTGCGCGagctagg ctacgtcatatcttccttcgtatcgagcgtaaaactcctactcttcgggc tatgagcactcctcttgttttgaatattgaaattctccagataaatcgca tgcgcactgaggttttaatgaaacaatagaaagtttCGAAACccaagcca atcagctgtgttttaaacattcttttattttaaatctctaatgataaaca tcttttgtgaatgttgtctattatgtttaaacctattaatgagcaattcc cggtggggtcactagtggccgcctatagcagtgcctatagaccaagagta aggcctaaaagcctggatctgtctattgtgtagactagcgCGAGCACAAT TTGCAGTAAATCAAACAACgaaaatggttcaaaatttCGAGTAGGTGAGC AAATGAGATAGGTACAGTATATCGACTAGACTTTCTTATTCACCACTTAA CACTGGAGAAAATAATCAACCTCTCTCATTTTAGGCAGTACCCTaactac aacaacgacaatACGATATTGGTAAAAGGAAATAGGACGAGTATAACAAA AAAATgggctctttcagaaaaaaattcattcatggagggggggggggggg tttattatttttttcaatgatctACTCCTGGACATTTCGACTTTACACCC CCTGCACACGCGTTTTACCCCCTGagttttaccccctggacaagcatcaa atcGACCCACTTGACACTAAAAGTTACCCCTGGACAAATTCATCCCATGG GCATGGCATTTTTCAGGATCTTTTcgatacccctggacaatatatcttcC ACCTCCTATGAACGGTCTTTTTCTAGAAGAGCCCCCAATAcagttaaaac aaaaaatacagttAAAAAActagaagaaaaataaaaaacgttaaaaaaag ttttattgccCGGTATTATAAAAACATGGACAAAGCACTTTTTCATAGCC AAATTGGTGAGGAAAAAATCAAGTGTACGTTTTTCATAAGATAACGCTTG TATCCTGGCTCAAATCTTGGAAAAACTTCAGCATTGAGTTActgaatttg caaaaaaatgcaaaaatcatGCAAAATGAATAAATTGCACCATTACACAA GGatggccgggtagctcagtcggtagagcattcaccttacaatctaaggg ttgtgggttcgatctcCGGTCACtgccaactcagcggatgagtagcttag attgggtaatctactctaggcggtaagttactgggagctgagagtaggtg tggcgctccacctcagcattcgatctcccaggtctagcgcaaatagaaaa ggggatagactccctcactcccggctccgccgacagccaccagatgaata tacttactttacTATAAGGATGGCAAAAGCATATTCTAGGctcaaaaatt ttcctttggctTACGTgtacacaaaaacaaacaaaaagaccggataaaag tttaaaagaatagaccttatcggagtttttgatttttctaaaaaggcgAT GCGTTGTGAGATTGTTTCGAGTTTCATACAATAAAATTTCCTCGatgaat tcctaagagatttctatcggaacaatcccacaatgcatcgcttttaaaaa aaaatcaaaaactccgatatgatcaattattcaaatttgacCGAGTTCCA TTCTGAACATATACAAGTGATATTGACAGATTTTACTCATACTTAAATGT TTGTCTGCTTAAAACAAAATATTCCCACAATGCAATTCAATAATCAGGTG TTTCTTCTTTAATTTGGTCTATAGGTATCATTCCATCaacaaaagttgaa attttgtcTACGGCGTCGCTAGGTGGGTCCGACGGCTGGGTCTCCGCACC CATATCTAAAAGTGTGTTTTCAAAATCACTCATTTGTATGTAGCGAGGGT CCCCGGACCCATCTTCACCGTCGGAAAGCGGGTCTCCGTTACTTATAGGT GACGTGACAGGGTTCTTATGTACATTATTAACATGTTTCAAATACGCCGT CCGTGTCGGGAATGTTAGAACACAGAAATTACATTCGAATACATCTTGAA CGTCAAAAGTCACCGTTTCACGTTTTTCATTATCTAACATGAAACTATCT TCTAGATCctcttcttttattttaaacatAACTTGATCTAGATCCGTAAC CGGAATTGCTTCTTTCCGTTTAAGTGGACGNTTTATTTTAAACATAACTT GATCTAGATCCGTAACCGGAATTGCTTCTTTCCGTTTAAGCGGACGCCCT TTCCGTTTCGATTTGGTCGTGCTTGATTGTCCGGACGTCTCACCTTCCGT AGCTTGATTGGCACCGTCTGTCCGCGTTTTCGTAGAATTACGCGGTTTCT TTTTGTTAGGTTCTTTACAACTAATAGGTCGATCAAAAACACCATTTTGT ATGTGTCTTTTATGGTGGGAATTCAAACCCGACTTGTGGCGGAAAGGGCG GCTGCAAAACATACATTTATACGGAAACTCTCCAGTATGAATCAACATGT GATCGTTCAAGTGCGCCTGCGCTAGAAATTTCCTCGAGCACACGTTACAA GTGAATTTCTTCTCTTTACCCGAACGAAAACTTCGCCCGTGTGTAACCAA AGAACCATTTTTATCCTTAGCTGCTTTCTCTTCCCTTAAGCTTTTCGCCA CTGATTCTTCTATACTATTCTCCACCTCTAACACGCCATTATGATTAATC AGCGCTTTTTCGATAACTTCTTTACCGTGTATGTCGTCCAAGATATTTTT CGATCCACCGCTGGAGTCGGAGGATGGTGCCCCAGTTGCGTTATAATGTC TTGGTTTGGGTCCTCTCCTGTTCTTATCATCATAACATTGTATCCGTTCC AACATTATCCCGTTCGCTATGTTATCAAGCGGAAAATCGACCCAGTCCCC ACCCGGATGGTCACTGACGAAAATCCGTGCCTCCACTTGACCGACAGGGT CTAGAATATAGGCGAACTCCGACTTTCTCTCACGATCCGTATCACTAGTG CTTGTCGATATTCCCGTGGTTAGATCACCGTTATCAATGACTCTGATCAT GAAAATAACACGCCCGTCCATCGTTTTCACTTTCTTGCATTGGAACTTGG CCCCCGTAGAAAATTCAGCTCTCAACGTCTTGGAGCCAGCAAATCCTTCA TGTGATTTCGATATAGCGACCATTATTTTTGGGTCAATAACAGGTTCTGA TGTTGGTATAGGGCTGTTCATCATCTGGACGGTTTGAGATTGATCTGAAG ATTGAGCCGGGATTAAGGAAGGTCCAGGCTGGACAAAGACGGTAGGTGTC ATTTGTGCAGGTTGCAGTATCTGGATGGTCTTAGGTGGCAGGGGTCCAGC TACCGTTCCAGGAGGGGGTGGTGCTTGGATTAGTACTGTGCCTGCTGGCA GCGCGTTTTCAAGATTCTTCGGGAAGCGATCCGGAGAAAGAATAGCTGGT GACAGGGGGATAGCACCAGCTGGGAATGAAGTCATTGGCTGCATCACGTT GATGTTGTGAGGGTACGGTGCAATGGGGACGAAACGTTGTGTAGCTACTG TCGGTGTAACTGCTAAAGGTGTGGTCACCATAGTTGGTGCAGACGCTAGG TGGTTGTCTTCTAGTTTCTGACGTTTAACTTTGGGGTTATCACTTCGTTC AGAGTGACTGTATGGAATAGGTCCTTCAAAGACTTCGTACTTGTGGTGAA Gct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045744XLOC_045744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073667-exon-scaffold_97-1491911889:584445..587121TCONS_00073667-exon-scaffold_97-1491911889:584445..587121Clytia hemisphaericaexon
TCONS_00073667-exon-scaffold_97-1510915933:584445..587121TCONS_00073667-exon-scaffold_97-1510915933:584445..587121Clytia hemisphaericaexon
TCONS_00073667-exon-scaffold_97-1575043694:584445..587121TCONS_00073667-exon-scaffold_97-1575043694:584445..587121Clytia hemisphaericaexon
TCONS_00073667-exon-scaffold_97-1491911889:587188..588697TCONS_00073667-exon-scaffold_97-1491911889:587188..588697Clytia hemisphaericaexon
TCONS_00073667-exon-scaffold_97-1510915933:587188..588697TCONS_00073667-exon-scaffold_97-1510915933:587188..588697Clytia hemisphaericaexon
TCONS_00073667-exon-scaffold_97-1575043694:587188..588697TCONS_00073667-exon-scaffold_97-1575043694:587188..588697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:584445..588697 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.435044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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