Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=transcript|length=858bp
TCGCCACAATTTGACTATACTCCTTCAGGATGACAAGTTCTGATATGATG
TTTCAGTTCTCCTCTTCTACCCATCGCTAATTTACAGTAACGACATCTGT
AAGGTTTCTGGTCAGTATGAATGTGTGCGTGGAACTTCAAATTGGACAGT
TTATTGAAAGCTTTTCCACACACTTTACAAGCGTACGGTTTCTCACCTGT
ATGTATCAAGATATGATTCCGTAAATTACCTTTTTGATGGAATCCTTTGC
CACATGTTCGGCAGACAAATTCCTTAGTTTGGTTGTGTGTTCGGAGATGT
GTTTTCAGTGTTGAAGATCTATTAAAGGATTTGGAACAGACGAAACACTT
GTGAGGACGTTCTGAAGTGTGGATGATTTTGTGTCGGCATAAAGTGCTGG
AGAGTCGAAACGACTTACCGCATATTGTACAAACAAACGGCTTCTGTGAT
GACGGAATGTATTCTTCGCCTTCAACGCCCATCTTTTTGGCATAAGAGGG
CGCTCTTTGAAATTGTAACGGACCATTGTTCTGTCTCTCATATTCATAGA
TTCGCTTATGTGTTTCAGTGTAGCGTTCTTGGTAATAGATATCCTCATCA
TCATCAAAACTGTCAGAAACACTGATTTTTCTATAATCTACATTATCGTG
GTCATCATTTGCCACCCTATACCGCCCTCTGAGATATTCTTCTTCAGGGG
GTTCGCCCTCCTCGCTTGAATTTTCTTCCGTCTTTCGCCCATATTGATAG
TGTGGTCTAAGTATATCCACTATGTTATTGTTGGCATCATAAATGATTCT
GTTTTCTTGAGTTTGCTCCTCTGCCAGACGTTGGTCATCTttggctttca
aaattttg Run BLAST on NCBI protein sequence of TCONS_00073634-protein >TCONS_00073634-protein ID=TCONS_00073634-protein|Name=TCONS_00073634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
KILKAKDDQRLAEEQTQENRIIYDANNNIVDILRPHYQYGRKTEENSSEE
GEPPEEEYLRGRYRVANDDHDNVDYRKISVSDSFDDDEDIYYQERYTETH
KRIYEYERQNNGPLQFQRAPSYAKKMGVEGEEYIPSSQKPFVCTICGKSF
RLSSTLCRHKIIHTSERPHKCFVCSKSFNRSSTLKTHLRTHNQTKEFVCR
TCGKGFHQKGNLRNHILIHTGEKPYACKVCGKAFNKLSNLKFHAHIHTDQ
KPYRCRYCKLAMGRRGELKHHIRTCHPEGV Run BLAST on NCBI transcript from alignment at scaffold_96:55905..56762 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_96:55905..56762 (Clytia hemisphaerica)
caaaattttgaaagccaaAGATGACCAACGTCTGGCAGAGGAGCAAACTC
AAGAAAACAGAATCATTTATGATGCCAACAATAACATAGTGGATATACTT
AGACCACACTATCAATATGGGCGAAAGACGGAAGAAAATTCAAGCGAGGA
GGGCGAACCCCCTGAAGAAGAATATCTCAGAGGGCGGTATAGGGTGGCAA
ATGATGACCACGATAATGTAGATTATAGAAAAATCAGTGTTTCTGACAGT
TTTGATGATGATGAGGATATCTATTACCAAGAACGCTACACTGAAACACA
TAAGCGAATCTATGAATATGAGAGACAGAACAATGGTCCGTTACAATTTC
AAAGAGCGCCCTCTTATGCCAAAAAGATGGGCGTTGAAGGCGAAGAATAC
ATTCCGTCATCACAGAAGCCGTTTGTTTGTACAATATGCGGTAAGTCGTT
TCGACTCTCCAGCACTTTATGCCGACACAAAATCATCCACACTTCAGAAC
GTCCTCACAAGTGTTTCGTCTGTTCCAAATCCTTTAATAGATCTTCAACA
CTGAAAACACATCTCCGAACACACAACCAAACTAAGGAATTTGTCTGCCG
AACATGTGGCAAAGGATTCCATCAAAAAGGTAATTTACGGAATCATATCT
TGATACATACAGGTGAGAAACCGTACGCTTGTAAAGTGTGTGGAAAAGCT
TTCAATAAACTGTCCAATTTGAAGTTCCACGCACACATTCATACTGACCA
GAAACCTTACAGATGTCGTTACTGTAAATTAGCGATGGGTAGAAGAGGAG
AACTGAAACATCATATCAGAACTTGTCATCCTGAAGGAGTATAGTCAAAT
TGTGGCGA Coding sequence (CDS) from alignment at scaffold_96:55905..56762 >TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_96:55905..56762 (Clytia hemisphaerica)
aaaattttgaaagccaaAGATGACCAACGTCTGGCAGAGGAGCAAACTCA
AGAAAACAGAATCATTTATGATGCCAACAATAACATAGTGGATATACTTA
GACCACACTATCAATATGGGCGAAAGACGGAAGAAAATTCAAGCGAGGAG
GGCGAACCCCCTGAAGAAGAATATCTCAGAGGGCGGTATAGGGTGGCAAA
TGATGACCACGATAATGTAGATTATAGAAAAATCAGTGTTTCTGACAGTT
TTGATGATGATGAGGATATCTATTACCAAGAACGCTACACTGAAACACAT
AAGCGAATCTATGAATATGAGAGACAGAACAATGGTCCGTTACAATTTCA
AAGAGCGCCCTCTTATGCCAAAAAGATGGGCGTTGAAGGCGAAGAATACA
TTCCGTCATCACAGAAGCCGTTTGTTTGTACAATATGCGGTAAGTCGTTT
CGACTCTCCAGCACTTTATGCCGACACAAAATCATCCACACTTCAGAACG
TCCTCACAAGTGTTTCGTCTGTTCCAAATCCTTTAATAGATCTTCAACAC
TGAAAACACATCTCCGAACACACAACCAAACTAAGGAATTTGTCTGCCGA
ACATGTGGCAAAGGATTCCATCAAAAAGGTAATTTACGGAATCATATCTT
GATACATACAGGTGAGAAACCGTACGCTTGTAAAGTGTGTGGAAAAGCTT
TCAATAAACTGTCCAATTTGAAGTTCCACGCACACATTCATACTGACCAG
AAACCTTACAGATGTCGTTACTGTAAATTAGCGATGGGTAGAAGAGGAGA
ACTGAAACATCATATCAGAACTTGTCATCCTGAAGGAGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073634-exon-scaffold_96-1491911889:55905..56762 | TCONS_00073634-exon-scaffold_96-1491911889:55905..56762 | Clytia hemisphaerica | exon |
| TCONS_00073634-exon-scaffold_96-1510915933:55905..56762 | TCONS_00073634-exon-scaffold_96-1510915933:55905..56762 | Clytia hemisphaerica | exon |
| TCONS_00073634-exon-scaffold_96-1575043694:55905..56762 | TCONS_00073634-exon-scaffold_96-1575043694:55905..56762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_96 | supercontig | scaffold_96:55905..56762 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00073634 vs. Swiss-Prot (Human)
Match: FEZF2 (Fez family zinc finger protein 2 OS=Homo sapiens GN=FEZF2 PE=2 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 7.056e-52 Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = -2 Query: 30 SSQKPFVCTICGKSFRLSSTLCRHKIIHTSERPHKCFVCSKSFNRSSTLKTHLRTHNQTKEFVCRTCGKGFHQKGNLRNHILIHTGEKPYACKVCGKAFNKLSNLKFHAHIHTDQKPYRCRYCKLAMGRRGELKHHIRTCH 452
+ +PFVC +CGK FR +STLCRHKIIHT E+PHKC C K+FNRSSTL TH+R H K FVC CGKGFHQKGN +NH L H+GEK Y C +C KAF+++ NL FH H H D+KP+ C C R +LK H+R H
Sbjct: 300 TGARPFVCKVCGKGFRQASTLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSGEKQYKCTICNKAFHQVYNLTFHMHTHNDKKPFTCATCGKGFCRNFDLKKHVRKLH 440
The following BLAST results are available for this feature:
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