TCONS_00073634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073634
Unique NameTCONS_00073634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=transcript|length=858bp
TCGCCACAATTTGACTATACTCCTTCAGGATGACAAGTTCTGATATGATG
TTTCAGTTCTCCTCTTCTACCCATCGCTAATTTACAGTAACGACATCTGT
AAGGTTTCTGGTCAGTATGAATGTGTGCGTGGAACTTCAAATTGGACAGT
TTATTGAAAGCTTTTCCACACACTTTACAAGCGTACGGTTTCTCACCTGT
ATGTATCAAGATATGATTCCGTAAATTACCTTTTTGATGGAATCCTTTGC
CACATGTTCGGCAGACAAATTCCTTAGTTTGGTTGTGTGTTCGGAGATGT
GTTTTCAGTGTTGAAGATCTATTAAAGGATTTGGAACAGACGAAACACTT
GTGAGGACGTTCTGAAGTGTGGATGATTTTGTGTCGGCATAAAGTGCTGG
AGAGTCGAAACGACTTACCGCATATTGTACAAACAAACGGCTTCTGTGAT
GACGGAATGTATTCTTCGCCTTCAACGCCCATCTTTTTGGCATAAGAGGG
CGCTCTTTGAAATTGTAACGGACCATTGTTCTGTCTCTCATATTCATAGA
TTCGCTTATGTGTTTCAGTGTAGCGTTCTTGGTAATAGATATCCTCATCA
TCATCAAAACTGTCAGAAACACTGATTTTTCTATAATCTACATTATCGTG
GTCATCATTTGCCACCCTATACCGCCCTCTGAGATATTCTTCTTCAGGGG
GTTCGCCCTCCTCGCTTGAATTTTCTTCCGTCTTTCGCCCATATTGATAG
TGTGGTCTAAGTATATCCACTATGTTATTGTTGGCATCATAAATGATTCT
GTTTTCTTGAGTTTGCTCCTCTGCCAGACGTTGGTCATCTttggctttca
aaattttg
Run BLAST on NCBI

protein sequence of TCONS_00073634-protein

>TCONS_00073634-protein ID=TCONS_00073634-protein|Name=TCONS_00073634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
KILKAKDDQRLAEEQTQENRIIYDANNNIVDILRPHYQYGRKTEENSSEE
GEPPEEEYLRGRYRVANDDHDNVDYRKISVSDSFDDDEDIYYQERYTETH
KRIYEYERQNNGPLQFQRAPSYAKKMGVEGEEYIPSSQKPFVCTICGKSF
RLSSTLCRHKIIHTSERPHKCFVCSKSFNRSSTLKTHLRTHNQTKEFVCR
TCGKGFHQKGNLRNHILIHTGEKPYACKVCGKAFNKLSNLKFHAHIHTDQ
KPYRCRYCKLAMGRRGELKHHIRTCHPEGV
Run BLAST on NCBI

transcript from alignment at scaffold_96:55905..56762

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_96:55905..56762 (Clytia hemisphaerica)
caaaattttgaaagccaaAGATGACCAACGTCTGGCAGAGGAGCAAACTC
AAGAAAACAGAATCATTTATGATGCCAACAATAACATAGTGGATATACTT
AGACCACACTATCAATATGGGCGAAAGACGGAAGAAAATTCAAGCGAGGA
GGGCGAACCCCCTGAAGAAGAATATCTCAGAGGGCGGTATAGGGTGGCAA
ATGATGACCACGATAATGTAGATTATAGAAAAATCAGTGTTTCTGACAGT
TTTGATGATGATGAGGATATCTATTACCAAGAACGCTACACTGAAACACA
TAAGCGAATCTATGAATATGAGAGACAGAACAATGGTCCGTTACAATTTC
AAAGAGCGCCCTCTTATGCCAAAAAGATGGGCGTTGAAGGCGAAGAATAC
ATTCCGTCATCACAGAAGCCGTTTGTTTGTACAATATGCGGTAAGTCGTT
TCGACTCTCCAGCACTTTATGCCGACACAAAATCATCCACACTTCAGAAC
GTCCTCACAAGTGTTTCGTCTGTTCCAAATCCTTTAATAGATCTTCAACA
CTGAAAACACATCTCCGAACACACAACCAAACTAAGGAATTTGTCTGCCG
AACATGTGGCAAAGGATTCCATCAAAAAGGTAATTTACGGAATCATATCT
TGATACATACAGGTGAGAAACCGTACGCTTGTAAAGTGTGTGGAAAAGCT
TTCAATAAACTGTCCAATTTGAAGTTCCACGCACACATTCATACTGACCA
GAAACCTTACAGATGTCGTTACTGTAAATTAGCGATGGGTAGAAGAGGAG
AACTGAAACATCATATCAGAACTTGTCATCCTGAAGGAGTATAGTCAAAT
TGTGGCGA

Coding sequence (CDS) from alignment at scaffold_96:55905..56762

>TCONS_00073634 ID=TCONS_00073634|Name=TCONS_00073634|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_96:55905..56762 (Clytia hemisphaerica)
aaaattttgaaagccaaAGATGACCAACGTCTGGCAGAGGAGCAAACTCA
AGAAAACAGAATCATTTATGATGCCAACAATAACATAGTGGATATACTTA
GACCACACTATCAATATGGGCGAAAGACGGAAGAAAATTCAAGCGAGGAG
GGCGAACCCCCTGAAGAAGAATATCTCAGAGGGCGGTATAGGGTGGCAAA
TGATGACCACGATAATGTAGATTATAGAAAAATCAGTGTTTCTGACAGTT
TTGATGATGATGAGGATATCTATTACCAAGAACGCTACACTGAAACACAT
AAGCGAATCTATGAATATGAGAGACAGAACAATGGTCCGTTACAATTTCA
AAGAGCGCCCTCTTATGCCAAAAAGATGGGCGTTGAAGGCGAAGAATACA
TTCCGTCATCACAGAAGCCGTTTGTTTGTACAATATGCGGTAAGTCGTTT
CGACTCTCCAGCACTTTATGCCGACACAAAATCATCCACACTTCAGAACG
TCCTCACAAGTGTTTCGTCTGTTCCAAATCCTTTAATAGATCTTCAACAC
TGAAAACACATCTCCGAACACACAACCAAACTAAGGAATTTGTCTGCCGA
ACATGTGGCAAAGGATTCCATCAAAAAGGTAATTTACGGAATCATATCTT
GATACATACAGGTGAGAAACCGTACGCTTGTAAAGTGTGTGGAAAAGCTT
TCAATAAACTGTCCAATTTGAAGTTCCACGCACACATTCATACTGACCAG
AAACCTTACAGATGTCGTTACTGTAAATTAGCGATGGGTAGAAGAGGAGA
ACTGAAACATCATATCAGAACTTGTCATCCTGAAGGAGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045724XLOC_045724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073634-proteinTCONS_00073634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073634-exon-scaffold_96-1491911889:55905..56762TCONS_00073634-exon-scaffold_96-1491911889:55905..56762Clytia hemisphaericaexon
TCONS_00073634-exon-scaffold_96-1510915933:55905..56762TCONS_00073634-exon-scaffold_96-1510915933:55905..56762Clytia hemisphaericaexon
TCONS_00073634-exon-scaffold_96-1575043694:55905..56762TCONS_00073634-exon-scaffold_96-1575043694:55905..56762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:55905..56762 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.581698	0.528587	0.620815	0.366426	1.35422	1.00948	0.290552	0.304042	1.42704	1.00542	0.626781	1.13967	1.05645	1.41428	0.224871	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00073634 vs. Swiss-Prot (Human)
Match: FEZF2 (Fez family zinc finger protein 2 OS=Homo sapiens GN=FEZF2 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.056e-52
Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = -2 
Query:   30 SSQKPFVCTICGKSFRLSSTLCRHKIIHTSERPHKCFVCSKSFNRSSTLKTHLRTHNQTKEFVCRTCGKGFHQKGNLRNHILIHTGEKPYACKVCGKAFNKLSNLKFHAHIHTDQKPYRCRYCKLAMGRRGELKHHIRTCH 452
            +  +PFVC +CGK FR +STLCRHKIIHT E+PHKC  C K+FNRSSTL TH+R H   K FVC  CGKGFHQKGN +NH L H+GEK Y C +C KAF+++ NL FH H H D+KP+ C  C     R  +LK H+R  H
Sbjct:  300 TGARPFVCKVCGKGFRQASTLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSGEKQYKCTICNKAFHQVYNLTFHMHTHNDKKPFTCATCGKGFCRNFDLKKHVRKLH 440
The following BLAST results are available for this feature:
BLAST of TCONS_00073634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FEZF27.056e-5258.16Fez family zinc finger protein 2 OS=Homo sapiens G... [more]
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