TCONS_00073625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073625
Unique NameTCONS_00073625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073625 ID=TCONS_00073625|Name=TCONS_00073625|organism=Clytia hemisphaerica|type=transcript|length=228bp
CACGGTGGTTGGAGTTCTTGGTCTCTGTATTCTGAATGCCAAGGTGCTTG
CCAATATGAAGAtatcccgatttcccgatcttatATTCGAACTTGTGATA
ATCCCGAACCGGATTACGGTGGACGAAAATGTGCTGGAGACAAATTCAAA
TCTGAAAAATGTGACCTGAAACCCTGTCAATctGTAAAAGCAGACACAGT
GGTACAGTTTTATGGGGAAAGATTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_96:28159..28599-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073625 ID=TCONS_00073625|Name=TCONS_00073625|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at scaffold_96:28159..28599- (Clytia hemisphaerica)
CACGGTGGTTGGAGTTCTTGGTCTCTGTATTCTGAATGCCAAGGTGCTTG
CCAATATGAAGATATCCCGATTTCCCGATCTTATATTCGAACTTGTGATA
ATCCCGAACCGGATTACGGTGGACGAAAATGTGCTGGAGACAAATTCAAA
TCTGAAAAATGTGACCTGAAACCCTGTCAATGTGAGATATTTGTCTTTTT
GATTATTTCACTAATTTCGAATTTCAGGCTAAGTATCTGAGGATACATAT
ACTCATCCCCTTATCAGTAAATTCTAAATACTATTTCATTCGATCATTGA
CTGATTTATAATGACGTAACGATTATTTCCTCCTTTTCAAGGAAGAAGCT
TTCATTGATAGTTTCGTCATAAGGAATTTTAATTTCAATTTCAGCTGTAA
AAGCAGACACAGTGGTACAGTTTTATGGGGAAAGATTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045720XLOC_045720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073625-exon-scaffold_96-1575043694:28419..28599TCONS_00073625-exon-scaffold_96-1575043694:28419..28599Clytia hemisphaericaexon
TCONS_00073625-exon-scaffold_96-1575043694:28159..28205TCONS_00073625-exon-scaffold_96-1575043694:28159..28205Clytia hemisphaericaexon
TCONS_00073625-exon-scaffold_96-1510915933:28419..28599TCONS_00073625-exon-scaffold_96-1510915933:28419..28599Clytia hemisphaericaexon
TCONS_00073625-exon-scaffold_96-1510915933:28159..28205TCONS_00073625-exon-scaffold_96-1510915933:28159..28205Clytia hemisphaericaexon
TCONS_00073625-exon-scaffold_96-1491911889:28419..28599TCONS_00073625-exon-scaffold_96-1491911889:28419..28599Clytia hemisphaericaexon
TCONS_00073625-exon-scaffold_96-1491911889:28159..28205TCONS_00073625-exon-scaffold_96-1491911889:28159..28205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:28159..28599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.384142	1.62015	0.178279	0	0	0	0	0	0	0	0	0	0.621485	0.0717668	0.827156	0	3.0068	0.453139	3.2826	2.85346	3.21679	0	5.75645	0	0	0	0	3.78078	0	1.87866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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