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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073593 ID=TCONS_00073593|Name=TCONS_00073593|organism=Clytia hemisphaerica|type=transcript|length=1098bp
CTTCTATCGATGATATCTATTAATCATTTCTCCTGCATATAGCAACAAAT
GGGATGGCAAAACCATGAAAAGTGTGAAATTGAATGATGGAACTACGGTC
AGTTTTGATGatgttttgaaaattttgttggaaaagaatttcgcgaaatt
cgaagaaattttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGGTG
GTAATGGTTCGACACTTCTCATGAGGGCTGTTTATGGAGATCGTTTCGAC
GTTTTCGTTCACTTGATGAATTGTCCTCAAGATTTTTCACTCGTGAACAA
TTATGGTCTGAACGTTCTTCATTGTGTTGGTTATAAAGGAAAAGTTCGTC
ATTTGGAACAATTTGATCAACAATCAATCGAAAAGTTGATCGATGGAAGA
GACAAAGATAACGACACACCGTTGCATGATGCAGCAAGTCGCaacaatca
tgacgtcatcagatggtTGTTGGCCCATGGAGCGGATCATGAACTGAAAG
ACAGTCGTGGTCAACGCCCTGATGAACATCCTGATTGTGATGGTGTTACC
AAAGAAATCTTTCGATCGTTTCGTTCGTCTtgattgaTTGATTGTTTCCA
TTGTTTGTTTCATCGtttccaatgacgtcatcggttccAAATTATTTCTA
CattcCCAGCACGACAGCACGCATGAGAAGTTACACCCGTCGTTTTTGAC
GCCGTTTCTACAATTACGTTATTTATTCATCCCGTCTCTACAGTTCTGTT
TGCGTTCAAACCTccattttggcttgtttttaggTGTATATTTACCACTT
TACTAACTTGACTATTATTACGTCAACCGTCACTAGTTTCGGTGGCGTGT
CTACTCTTACGCACTTACGTTTCCACCTTATGGATTACCTTGGTTGAATA
TGAAAAAGAGTACAGTGCTAAAACTGATGTCGCTATTGATTTCGATTGGA
TCGTTTCCCTTGTAAATATCCGACTCTTTTCGCTGACTCGGTGAAATTTT
GTTCAGTCAGTCagggaaaaatttttaaatactatttttagTGGAAAACC
CTGTCAACAGTGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCG Run BLAST on NCBI transcript from alignment at scaffold_95:175631..180220- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073593 ID=TCONS_00073593|Name=TCONS_00073593|organism=Clytia hemisphaerica|type=transcript|length=4590bp|location=Sequence derived from alignment at scaffold_95:175631..180220- (Clytia hemisphaerica)
CTTCTATCGATGATATCTATTAATCATTTCTCCTGCATATAGCAACAAAT
GGGATGGCAAAACCATGAAAAGTGTGAAATTGAATGATGGAACTACGGTC
AGTTTTGATGGTAAGTTTGATTCGAAATTTTGTTTTGATATACGGCAAAT
TTTATAAATTTTCGACTATACAATCAAAAGCTCGCGAGTACCCAAAACGA
AACATCCTTATTTTCTATTCTGGTGTTCTATATTCTCAGGAAAAAAAACT
TGGAACATATGATAATTGAAGGCCAATCTATATCATAGGATTTGTACATC
TGTTACATAATATTTTCTGTCCATGATTTGGTTTGATTTTATTTGATCAT
TCATTTGATTCAATGTTCAAATCATATCAAATCATCTCATTTCTTTGACA
GTAGTAAACAAACAGACGATTAGACACTGCTAGACAACAAAGGGCAACTT
TCAAGTTGTCATTTTTGATTTACAGTGGGAAATTCGAATTTAGCGCTCAT
TTCTCACTTACTAAAATAAAAACCAAATTTCGGAAGTTGCGTTTTTTCTA
AGAAAGTGTGACCAGTGAAAAAATAACAGAATTTGATTGGCTATGTTTTT
AACCGTCTTTAAAATCTTGGAAATTCAAACTCACAGCCCAAACCATGCTA
TACATTTCACCATCAGTATATGAAATAAGAAATCATAGCATCGATTCCCA
GGCTACAAAAATAAATGTCACTGGACTTGTCCCACAAAATTTGAGCAAAA
AATAAATGAACATAATTAGACGGGGTTCTATTTTCGGTATTCTCAGAGAC
TGATGACGTCACCCCCTCCCTCCAAGATGCTCAAGTAAGGTTTAACGTTT
TAGAAACAATTTGAGAATATTTTAAGACTAGAAATTGAAAATTTACCATT
TTACTTTTATTAAGATATTTTAATGGCCTCACTTGAAAGGGTTTTTCATT
TATTACGAAATGGGAGGGACACAAAGACAATCAACTGAAATNTTTTATTA
AGATATTTCAATGGCCTCACTTGAAAGGGTCTTTCTCTTATTACGAAATG
GGAGGGACACAAAGACAATCAACTGAAATCATAATAAAAGAAATGTCAAT
TTCATCCTCAAGGGAACGATTTATTTTTTTTCTTCTCAAAATGAAAGTTT
CTTGCGTTTGTTTCACTTGCTTTTTATATGTGATGTGTGATGGTGGTGGG
GTAACTGGTTTTTGTGGAAAAGTGAATGAATTAATGAATGAATGAATAAA
TTTGAACGGAGAAATTTCTAGTTCCTTTAACCTTTAATTTAGTGAAAGTA
CCTGTGTAAAATTAAATTTATTCAGTTTGCAGCTTTATATGACAATTTGA
GAAACACATTCCATATAAGCACTTCTATTTTTTTATCGTTTTTTGAGAAT
AAGGCATAATTTTCTCGGATTGCATCTCAAATAGTTCATGTGTACTTTTC
TGTTTTATCTTTGCTGTTTGTGTATTAGTTCACGCAAAATTTCACTTTTG
ACAAAAATTTTATTTTGAAAACTTTTTCGACTTTTTCACATTCTGAGAAA
TTTTTCGTGGAATTTTTTTTTCAGAATGGTAGCGATCGAGTTTCGTTTTT
CGCATTGAAAAGATTAATTTTTTTCTGAACAAAATTTTTCATCTGAACCA
AAAAAAAATTAGTTCATCAATCTGGAAATGAATTTCCAATTCCGTTTTCC
AATTTTTCAACTTTGAATCTTTTTTAGTTCTTGAGATCTAGATCTTCATT
TTTTCTAACTTCAATTTTTTTACCGTCACAAATAAAAATGATTTCTCACT
GAGCAAAAAGTTTTCATTCAAAATTCAAAATTTTTTCGCCATCAATTCGG
AAATATTTTTCTCGTTCTGTTTGCAAAATTTAAGCTCCAAAGTATTTTTG
GTTCCTGAGATATCGAGATTCATTTTTTGTTGAATTTTTTTTTACTCCGT
GAAAAGTTTGAAATTCTTCTTTTTTTCTTCAGATGTTTTGAAAATTTTGT
TGGAAAAGAATTTCGCGAAATTCGAAGAAATTTTCCGCCAAAAACCGAAC
ATCGTCAACTCGTTGCGTGGTGGTAATGGTTCGACACTTCTCATGAGGGC
TGTTTATGGAGATCGTTTCGACGTTTTCGTTCACTTGATGAATTGTCCTC
AAGATTTTTCACTCGTGAACAATTATGGTCTGAACGTTCTTCATTGTGTT
GGTTATAAAGGAAAAGTTCGTCATTTGGAACAATTTGATCAACAATCAAT
CGAAAAGTTGATCGATGGAAGAGACAAAGATAACGACACACCGTTGCATG
ATGCAGCAAGTCGCAACAATCATGACGTCATCAGATGGTTGTTGGCCCAT
GGAGCGGATCATGAACTGAAAGACAGTCGTGGTCAACGCCCTGATGAACA
TCCTGATTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGT
CTTGGTAAGAAAAATATCAACTTTTTCACGTTTTTTTAGGGTTGGAATAT
TTTTTAAACAATGAATTATTTTTTTTCTATTCGTACGAGAAGTGTTGAAA
CTTTTTTTGTTTTTTCAATAGAAGTGAAAAGTTATTTAGAAAGTCTTTAA
ATTTTTCAGTTTGATAAATTTTATCTTTTCGGAGTTCGAATGAATGAAAC
AAATGAATTGATTTCGATATTTTGATTGAGATTTTTCATTGCATTGGAGC
AGACATTTTTTGGAGACGGTTGAAATTTGCAAATAGATGGTTGTTTTCGA
TAAGTAACTTCTGAAGATTGCCTTCTAAGCAAGAAATAATGGTTGTTTGT
GAAATGTTTTCTCAAGTTGTTATGAATTTATTTTTTTGGTGNAAGCAAGA
AATAATGGTTGTTTGTGAAATGTTTTCTCAAGTTGTTATGAATTTTTTTT
TTTGGTGAAGAAAGAAATCGTCGTTTTATTTATTTTATCATACGTCTCTT
AAGATATTGTTCATGTGTTTCAAATGTTTTTCATTTGAATATTTATTTTT
CAGATTGATTGATTGTTTCCATTGTTTGTTTCATCGTTTCCAATGACGTC
ATCGGTTCCAAATTATTTCTACGTAAGTATATTTAATGGGGGGGGCGTAC
CAGTTTGTCGGTGTGTCGGTATTGACCTTTTTTTGCGTCGGTATTTCGGT
GATTAACAAAAAAAGTGTTGGTATTTCGGTGTTTGAGATGCTTTTCGGTG
ACGGAAAATGTTAAATTTTCAATCGGTGTACGGTAATTTTTCTCGAAACG
TCAAAGAAACGGTGCTAAAATCAAGGGTTATTTCTCAAAAATCCCTCCTA
TGTGATATGTCATATTAGAATTTTGAAAAAAACATAATAATAAGCAAAAT
GTTATATAACATTTTTTATCTACTTGGAAATACTATTCATCTTTTATCGA
CAGCTTGCAAAAAATGTCGGTGTCGGTATTTCGTAAAAAATGTGTCGGTA
TTGCGGTAATTTTGTGAAAAACTGTCGGTATTTCGGTGTCCAGGACCCTC
GTACGCCCCCNTTTCAGATTGATTGATTGTTTCCATTGTTTGTTTCATCG
TTTCCAATGACGTCATCGGTTCCTAATTATTTCTACGTAAGTATATTTAA
TCATGTACTTGGTTTCCAGCTGATGTGAAATTGCCTAAAGCCTAATTTTT
TCTGCATACCGGAATTTTTTGAAAAAATGGATCCATTCAAAAAACTTGGA
GAGGAGGGCTTGGTTAGCCTGTACCAAACTCTTCTTGGTGGACTGAAAAG
ACCAAGGGGGATTCAGTATAATGTACAGTTCAGACTTTCATGTGACTGAG
ACGAATCCACGCAAGTCTTGGTTGTAAAGAGTTGAACTATTTTCAGAATT
AAGCTTCTTTAATTTTAATTAGTCGAATAAATACAAATGTTTCTTTCTGT
AGTAAAAATAGCGTATAAAGCCTAAAATACCTCAATTTGACCTTGAAGTA
AGAAAAGGGGGCTATACCTCAAAGAAGTTTACCATAAAAAGACTCCGTAT
TCCGTTTTTTTCAAACTTTTCCACCACATCAGCTTTTCAGCATTCTCATT
AGCCGCTTTTTACCATTTTTATAAAAAGTATTTATTTATTTTCGAGTTAG
CAAGTTTTGTAGTGCAAGTAACCTCAATTTTTTTCATTTTTAGATTCCCA
GCACGACAGCACGCATGAGAAGTTACACCCGTCGTTTTTGACGCCGTTTC
TACAATTACGTTATTTATTCATCCCGTCTCTACAGTTCTGTTTGCGTTCA
AACCTCCATTTTGGCTTGTTTTTAGGTGTATATTTACCACTTTACTAACT
TGACTATTATTACGTCAACCGTCACTAGTTTCGGTGGCGTGTCTACTCTT
ACGCACTTACGTTTCCACCTTATGGATTACCTTGGTTGAATATGAAAAAG
AGTACAGTGCTAAAACTGATGTCGCTATTGATTTCGATTGGATCGTTTCC
CTTGTAAATATCCGACTCTTTTCGCTGACTCGGTGAAATTTTGTTCAGTC
AGTCAGGGAAAAATTTTTAAATACTATTTTTAGTGGAAAACCCTGTCAAC
AGTGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073593-exon-scaffold_95-1575043694:180111..180220 | TCONS_00073593-exon-scaffold_95-1575043694:180111..180220 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1575043694:177767..178238 | TCONS_00073593-exon-scaffold_95-1575043694:177767..178238 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1575043694:177149..177217 | TCONS_00073593-exon-scaffold_95-1575043694:177149..177217 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1575043694:175631..176077 | TCONS_00073593-exon-scaffold_95-1575043694:175631..176077 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1510915933:180111..180220 | TCONS_00073593-exon-scaffold_95-1510915933:180111..180220 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1510915933:177767..178238 | TCONS_00073593-exon-scaffold_95-1510915933:177767..178238 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1510915933:177149..177217 | TCONS_00073593-exon-scaffold_95-1510915933:177149..177217 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1510915933:175631..176077 | TCONS_00073593-exon-scaffold_95-1510915933:175631..176077 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1491911889:180111..180220 | TCONS_00073593-exon-scaffold_95-1491911889:180111..180220 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1491911889:177767..178238 | TCONS_00073593-exon-scaffold_95-1491911889:177767..178238 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1491911889:177149..177217 | TCONS_00073593-exon-scaffold_95-1491911889:177149..177217 | Clytia hemisphaerica | exon |
| TCONS_00073593-exon-scaffold_95-1491911889:175631..176077 | TCONS_00073593-exon-scaffold_95-1491911889:175631..176077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_95 | supercontig | scaffold_95:175631..180220 - |
Blast
The following BLAST results are available for this feature:
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