TCONS_00073592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073592
Unique NameTCONS_00073592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1098

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073592 ID=TCONS_00073592|Name=TCONS_00073592|organism=Clytia hemisphaerica|type=transcript|length=1098bp
CTTCTATCGATGATATCTATTAATCATTTCTCCTGCATATAGCAACAAAT
GGGATGGCAAAACCATGAAAAGTGTGAAATTGAATGATGGAACTACGGTC
AGTTTTGATGatgttttgaaaattttgttggaaaagaatttcgcgaaatt
cgaagaaattttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGGTG
GTAATGGTTCGACACTTCTCATGAGGGCTGTTTATGGAGATCGTTTCGAC
GTTTTCGTTCACTTGATGAATTGTCCTCAAGATTTTTCACTCGTGAACAA
TTATGGTCTGAACGTTCTTCATTGTGTTGGTTATAAAGGAAAAGTTCGTC
ATTTGGAACAATTTGATCAACAATCAATCGAAAAGTTGATCGATGGAAGA
GACAAAGATAACGACACACCGTTGCATGATGCAGCAAGTCGCaacaatca
tgacgtcatcagatggtTGTTGGCCCATGGAGCGGATCATGAACTGAAAG
ACAGTCGTGGTCAACGCCCTGATGAACATCCTGATTGTGATGGTGTTACC
AAAGAAATCTTTCGATCGTTTCGTTCGTCTtgATTGATTGATTGTTTCCA
TTGTTTGTTTCATCGtttccaatgacgtcatcggttccTAATTATTTCTA
CattcCCAGCACGACAGCACGCATGAGAAGTTACACCCGTCGTTTTTGAC
GCCGTTTCTACAATTACGTTATTTATTCATCCCGTCTCTACAGTTCTGTT
TGCGTTCAAACCTccattttggcttgtttttaggTGTATATTTACCACTT
TACTAACTTGACTATTATTACGTCAACCGTCACTAGTTTCGGTGGCGTGT
CTACTCTTACGCACTTACGTTTCCACCTTATGGATTACCTTGGTTGAATA
TGAAAAAGAGTACAGTGCTAAAACTGATGTCGCTATTGATTTCGATTGGA
TCGTTTCCCTTGTAAATATCCGACTCTTTTCGCTGACTCGGTGAAATTTT
GTTCAGTCAGTCagggaaaaatttttaaatactatttttagTGGAAAACC
CTGTCAACAGTGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00073592-protein

>TCONS_00073592-protein ID=TCONS_00073592-protein|Name=TCONS_00073592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MKSVKLNDGTTVSFDDVLKILLEKNFAKFEEIFRQKPNIVNSLRGGNGST
LLMRAVYGDRFDVFVHLMNCPQDFSLVNNYGLNVLHCVGYKGKVRHLEQF
DQQSIEKLIDGRDKDNDTPLHDAASRNNHDVIRWLLAHGADHELKDSRGQ
RPDEHPDCDGVTKEIFRSFRSS
Run BLAST on NCBI

transcript from alignment at scaffold_95:175631..180220-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073592 ID=TCONS_00073592|Name=TCONS_00073592|organism=Clytia hemisphaerica|type=transcript|length=4590bp|location=Sequence derived from alignment at scaffold_95:175631..180220- (Clytia hemisphaerica)
CTTCTATCGATGATATCTATTAATCATTTCTCCTGCATATAGCAACAAAT GGGATGGCAAAACCATGAAAAGTGTGAAATTGAATGATGGAACTACGGTC AGTTTTGATGGTAAGTTTGATTCGAAATTTTGTTTTGATATACGGCAAAT TTTATAAATTTTCGACTATACAATCAAAAGCTCGCGAGTACCCAAAACGA AACATCCTTATTTTCTATTCTGGTGTTCTATATTCTCAGGAAAAAAAACT TGGAACATATGATAATTGAAGGCCAATCTATATCATAGGATTTGTACATC TGTTACATAATATTTTCTGTCCATGATTTGGTTTGATTTTATTTGATCAT TCATTTGATTCAATGTTCAAATCATATCAAATCATCTCATTTCTTTGACA GTAGTAAACAAACAGACGATTAGACACTGCTAGACAACAAAGGGCAACTT TCAAGTTGTCATTTTTGATTTACAGTGGGAAATTCGAATTTAGCGCTCAT TTCTCACTTACTAAAATAAAAACCAAATTTCGGAAGTTGCGTTTTTTCTA AGAAAGTGTGACCAGTGAAAAAATAACAGAATTTGATTGGCTATGTTTTT AACCGTCTTTAAAATCTTGGAAATTCAAACTCACAGCCCAAACCATGCTA TACATTTCACCATCAGTATATGAAATAAGAAATCATAGCATCGATTCCCA GGCTACAAAAATAAATGTCACTGGACTTGTCCCACAAAATTTGAGCAAAA AATAAATGAACATAATTAGACGGGGTTCTATTTTCGGTATTCTCAGAGAC TGATGACGTCACCCCCTCCCTCCAAGATGCTCAAGTAAGGTTTAACGTTT TAGAAACAATTTGAGAATATTTTAAGACTAGAAATTGAAAATTTACCATT TTACTTTTATTAAGATATTTTAATGGCCTCACTTGAAAGGGTTTTTCATT TATTACGAAATGGGAGGGACACAAAGACAATCAACTGAAATNTTTTATTA AGATATTTCAATGGCCTCACTTGAAAGGGTCTTTCTCTTATTACGAAATG GGAGGGACACAAAGACAATCAACTGAAATCATAATAAAAGAAATGTCAAT TTCATCCTCAAGGGAACGATTTATTTTTTTTCTTCTCAAAATGAAAGTTT CTTGCGTTTGTTTCACTTGCTTTTTATATGTGATGTGTGATGGTGGTGGG GTAACTGGTTTTTGTGGAAAAGTGAATGAATTAATGAATGAATGAATAAA TTTGAACGGAGAAATTTCTAGTTCCTTTAACCTTTAATTTAGTGAAAGTA CCTGTGTAAAATTAAATTTATTCAGTTTGCAGCTTTATATGACAATTTGA GAAACACATTCCATATAAGCACTTCTATTTTTTTATCGTTTTTTGAGAAT AAGGCATAATTTTCTCGGATTGCATCTCAAATAGTTCATGTGTACTTTTC TGTTTTATCTTTGCTGTTTGTGTATTAGTTCACGCAAAATTTCACTTTTG ACAAAAATTTTATTTTGAAAACTTTTTCGACTTTTTCACATTCTGAGAAA TTTTTCGTGGAATTTTTTTTTCAGAATGGTAGCGATCGAGTTTCGTTTTT CGCATTGAAAAGATTAATTTTTTTCTGAACAAAATTTTTCATCTGAACCA AAAAAAAATTAGTTCATCAATCTGGAAATGAATTTCCAATTCCGTTTTCC AATTTTTCAACTTTGAATCTTTTTTAGTTCTTGAGATCTAGATCTTCATT TTTTCTAACTTCAATTTTTTTACCGTCACAAATAAAAATGATTTCTCACT GAGCAAAAAGTTTTCATTCAAAATTCAAAATTTTTTCGCCATCAATTCGG AAATATTTTTCTCGTTCTGTTTGCAAAATTTAAGCTCCAAAGTATTTTTG GTTCCTGAGATATCGAGATTCATTTTTTGTTGAATTTTTTTTTACTCCGT GAAAAGTTTGAAATTCTTCTTTTTTTCTTCAGATGTTTTGAAAATTTTGT TGGAAAAGAATTTCGCGAAATTCGAAGAAATTTTCCGCCAAAAACCGAAC ATCGTCAACTCGTTGCGTGGTGGTAATGGTTCGACACTTCTCATGAGGGC TGTTTATGGAGATCGTTTCGACGTTTTCGTTCACTTGATGAATTGTCCTC AAGATTTTTCACTCGTGAACAATTATGGTCTGAACGTTCTTCATTGTGTT GGTTATAAAGGAAAAGTTCGTCATTTGGAACAATTTGATCAACAATCAAT CGAAAAGTTGATCGATGGAAGAGACAAAGATAACGACACACCGTTGCATG ATGCAGCAAGTCGCAACAATCATGACGTCATCAGATGGTTGTTGGCCCAT GGAGCGGATCATGAACTGAAAGACAGTCGTGGTCAACGCCCTGATGAACA TCCTGATTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGT CTTGGTAAGAAAAATATCAACTTTTTCACGTTTTTTTAGGGTTGGAATAT TTTTTAAACAATGAATTATTTTTTTTCTATTCGTACGAGAAGTGTTGAAA CTTTTTTTGTTTTTTCAATAGAAGTGAAAAGTTATTTAGAAAGTCTTTAA ATTTTTCAGTTTGATAAATTTTATCTTTTCGGAGTTCGAATGAATGAAAC AAATGAATTGATTTCGATATTTTGATTGAGATTTTTCATTGCATTGGAGC AGACATTTTTTGGAGACGGTTGAAATTTGCAAATAGATGGTTGTTTTCGA TAAGTAACTTCTGAAGATTGCCTTCTAAGCAAGAAATAATGGTTGTTTGT GAAATGTTTTCTCAAGTTGTTATGAATTTATTTTTTTGGTGNAAGCAAGA AATAATGGTTGTTTGTGAAATGTTTTCTCAAGTTGTTATGAATTTTTTTT TTTGGTGAAGAAAGAAATCGTCGTTTTATTTATTTTATCATACGTCTCTT AAGATATTGTTCATGTGTTTCAAATGTTTTTCATTTGAATATTTATTTTT CAGATTGATTGATTGTTTCCATTGTTTGTTTCATCGTTTCCAATGACGTC ATCGGTTCCAAATTATTTCTACGTAAGTATATTTAATGGGGGGGGCGTAC CAGTTTGTCGGTGTGTCGGTATTGACCTTTTTTTGCGTCGGTATTTCGGT GATTAACAAAAAAAGTGTTGGTATTTCGGTGTTTGAGATGCTTTTCGGTG ACGGAAAATGTTAAATTTTCAATCGGTGTACGGTAATTTTTCTCGAAACG TCAAAGAAACGGTGCTAAAATCAAGGGTTATTTCTCAAAAATCCCTCCTA TGTGATATGTCATATTAGAATTTTGAAAAAAACATAATAATAAGCAAAAT GTTATATAACATTTTTTATCTACTTGGAAATACTATTCATCTTTTATCGA CAGCTTGCAAAAAATGTCGGTGTCGGTATTTCGTAAAAAATGTGTCGGTA TTGCGGTAATTTTGTGAAAAACTGTCGGTATTTCGGTGTCCAGGACCCTC GTACGCCCCCNTTTCAGATTGATTGATTGTTTCCATTGTTTGTTTCATCG TTTCCAATGACGTCATCGGTTCCTAATTATTTCTACGTAAGTATATTTAA TCATGTACTTGGTTTCCAGCTGATGTGAAATTGCCTAAAGCCTAATTTTT TCTGCATACCGGAATTTTTTGAAAAAATGGATCCATTCAAAAAACTTGGA GAGGAGGGCTTGGTTAGCCTGTACCAAACTCTTCTTGGTGGACTGAAAAG ACCAAGGGGGATTCAGTATAATGTACAGTTCAGACTTTCATGTGACTGAG ACGAATCCACGCAAGTCTTGGTTGTAAAGAGTTGAACTATTTTCAGAATT AAGCTTCTTTAATTTTAATTAGTCGAATAAATACAAATGTTTCTTTCTGT AGTAAAAATAGCGTATAAAGCCTAAAATACCTCAATTTGACCTTGAAGTA AGAAAAGGGGGCTATACCTCAAAGAAGTTTACCATAAAAAGACTCCGTAT TCCGTTTTTTTCAAACTTTTCCACCACATCAGCTTTTCAGCATTCTCATT AGCCGCTTTTTACCATTTTTATAAAAAGTATTTATTTATTTTCGAGTTAG CAAGTTTTGTAGTGCAAGTAACCTCAATTTTTTTCATTTTTAGATTCCCA GCACGACAGCACGCATGAGAAGTTACACCCGTCGTTTTTGACGCCGTTTC TACAATTACGTTATTTATTCATCCCGTCTCTACAGTTCTGTTTGCGTTCA AACCTCCATTTTGGCTTGTTTTTAGGTGTATATTTACCACTTTACTAACT TGACTATTATTACGTCAACCGTCACTAGTTTCGGTGGCGTGTCTACTCTT ACGCACTTACGTTTCCACCTTATGGATTACCTTGGTTGAATATGAAAAAG AGTACAGTGCTAAAACTGATGTCGCTATTGATTTCGATTGGATCGTTTCC CTTGTAAATATCCGACTCTTTTCGCTGACTCGGTGAAATTTTGTTCAGTC AGTCAGGGAAAAATTTTTAAATACTATTTTTAGTGGAAAACCCTGTCAAC AGTGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCG

Coding sequence (CDS) from alignment at scaffold_95:175631..180220-

>TCONS_00073592 ID=TCONS_00073592|Name=TCONS_00073592|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_95:175631..180220- (Clytia hemisphaerica)
AATGTTTTGAAAATTTTGTTGGAAAAGAATTTCGCGAAATTCGAAGAAAT
TTTCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGGTGGTAATGGTT
CGACACTTCTCATGAGGGCTGTTTATGGAGATCGTTTCGACGTTTTCGTT
CACTTGATGAATTGTCCTCAAGATTTTTCACTCGTGAACAATTATGGTCT
GAACGTTCTTCATTGTGTTGGTTATAAAGGAAAAGTTCGTCATTTGGAAC
AATTTGATCAACAATCAATCGAAAAGTTGATCGATGGAAGAGACAAAGAT
AACGACACACCGTTGCATGATGCAGCAAGTCGCAACAATCATGACGTCAT
CAGATGGTTGTTGGCCCATGGAGCGGATCATGAACTGAAAGACAGTCGTG
GTCAACGCCCTGATGAACATCCTGATTGTGATGGTGTTACCAAAGAAATC
TTTCGATCGTTTCGTTCGTCTTGATGAAAAGTGTGAAATTGAATGATGGA
ACTACGGTCAGTTTTGATGAATGTTTTGAAAATTTTGTTGGAAAAGAATT
TCGCGAAATTCGAAGAAATTTTCCGCCAAAAACCGAACATCGTCAACTCG
TTGCGTGGTGGTAATGGTTCGACACTTCTCATGAGGGCTGTTTATGGAGA
TCGTTTCGACGTTTTCGTTCACTTGATGAATTGTCCTCAAGATTTTTCAC
TCGTGAACAATTATGGTCTGAACGTTCTTCATTGTGTTGGTTATAAAGGA
AAAGTTCGTCATTTGGAACAATTTGATCAACAATCAATCGAAAAGTTGAT
CGATGGAAGAGACAAAGATAACGACACACCGTTGCATGATGCAGCAAGTC
GCAACAATCATGACGTCATCAGATGGTTGTTGGCCCATGGAGCGGATCAT
GAACTGAAAGACAGTCGTGGTCAACGCCCTGATGAACATCCTGATTGTGA
TGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTCTTGATGAAAAG
TGTGAAATTGAATGATGGAACTACGGTCAGTTTTGATGAATGTTTTGAAA
ATTTTGTTGGAAAAGAATTTCGCGAAATTCGAAGAAATTTTCCGCCAAAA
ACCGAACATCGTCAACTCGTTGCGTGGTGGTAATGGTTCGACACTTCTCA
TGAGGGCTGTTTATGGAGATCGTTTCGACGTTTTCGTTCACTTGATGAAT
TGTCCTCAAGATTTTTCACTCGTGAACAATTATGGTCTGAACGTTCTTCA
TTGTGTTGGTTATAAAGGAAAAGTTCGTCATTTGGAACAATTTGATCAAC
AATCAATCGAAAAGTTGATCGATGGAAGAGACAAAGATAACGACACACCG
TTGCATGATGCAGCAAGTCGCAACAATCATGACGTCATCAGATGGTTGTT
GGCCCATGGAGCGGATCATGAACTGAAAGACAGTCGTGGTCAACGCCCTG
ATGAACATCCTGATTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTT
CGTTCGTCTTGATGAAAAGTGTGAAATTGAATGATGGAACTACGGTCAGT
TTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045693XLOC_045693Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073592-proteinTCONS_00073592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073592-exon-scaffold_95-1575043694:180111..180220TCONS_00073592-exon-scaffold_95-1575043694:180111..180220Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1575043694:177767..178238TCONS_00073592-exon-scaffold_95-1575043694:177767..178238Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1575043694:176635..176703TCONS_00073592-exon-scaffold_95-1575043694:176635..176703Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1575043694:175631..176077TCONS_00073592-exon-scaffold_95-1575043694:175631..176077Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1510915933:180111..180220TCONS_00073592-exon-scaffold_95-1510915933:180111..180220Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1510915933:177767..178238TCONS_00073592-exon-scaffold_95-1510915933:177767..178238Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1510915933:176635..176703TCONS_00073592-exon-scaffold_95-1510915933:176635..176703Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1510915933:175631..176077TCONS_00073592-exon-scaffold_95-1510915933:175631..176077Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1491911889:180111..180220TCONS_00073592-exon-scaffold_95-1491911889:180111..180220Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1491911889:177767..178238TCONS_00073592-exon-scaffold_95-1491911889:177767..178238Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1491911889:176635..176703TCONS_00073592-exon-scaffold_95-1491911889:176635..176703Clytia hemisphaericaexon
TCONS_00073592-exon-scaffold_95-1491911889:175631..176077TCONS_00073592-exon-scaffold_95-1491911889:175631..176077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_95supercontigscaffold_95:175631..180220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.883286 1.5311 0.135061 1.97872e-05 2.43096e-09 0 0.0353815 0.944079 0 2.63549 2.84499 0.773586 3.59419 7.15611 1.99414 1.7064 0.783678 2.18397 0.0122129 3.04779 2.10282 2.33625 1.3493 1.76666 6.45045 5.971 3.34692 3.6424 4.46477 3.87216
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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