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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=transcript|length=1947bp
GTGAACGTGGACCACCTTATTCTGAAGAAGGGGAGCCCATCGTTTCAGGG
CAAGGACAACACATAAGGCCTCCTTGTAATTGATGTGAGAACCAGAAAAG
GGTGGGTAGTCAACCAGGAGGTTGGAGTAGAACCAATCTCCTTGAAACTC
AGCTCCGATACCCGTAGAGCATGCATCAGTATGTAGGTCAACAACCGGGC
CTTACCTACAAAGTAGGTAAAGTGATCATCTCCTGTGAACTTCCACTTTA
ACCCTAGAGCATCATGGTTGGCCGGGTGTACAGGAATAGACCTGTAAGCA
CGACAAAGGTCAACTTTGGCAATAAAATAGTCCTTCCCTATCAGTTTGGT
GGCATCACTTAGGGACTGAAAGGACTGCTTTTCAACAGAAATGTAGGAGT
TAACTCCTTTGCCCGGAGGCATTGAACAGTCATGAATAATGCGAATGTCA
TCAGAATCTGGCTTTGGAACAGCTCCAAGTGCACTGACAATTGATGGCTT
AGAATTAACAGCGACATAATTACCGGCCACAATCTCCTCGAGGATAGCTT
TGTCAACTTTCTCTTTAAAGATTGGACCGGGGGCAGAAGAATAGTGTTCT
CCATCTCCGCTGGAGTGATAGAAGAATCTGAGGGCAAGAGCTGAAATCCA
TTTTCGACCCCTTCGAGAATGAAGGCCCGATCCGGATCATCTCTAAGTTC
CCTTTCCCAAACAGAAAGGACAAGCGGAGATGAAGACAAAGACAATGGAG
AAAGAGGTCATTGGCCCGGAGGACCTACCTCTAAAGATGAGTGAAGGCAC
CCTTGGTGATTCTTCCCACAGGCCTGCGAACCAACTTTCCGGTTGCAAAC
ATGGGAGTACTTACAAGGGGACCTTTGACAACCTTTTTTGCTGTTGTACA
ACCTGCATATTTCTTCCCCGTTTGGAAGATGTGCAACAATGAAGGATTTC
AAGTTGCCAGACTCGCCGGGGTTATTCGATGAGTTACACCCAGCCCCTGA
CGCAGTAGATTTCGCAGCCCAGCGCGGAATAAGAAGAGCTTCGTGTAGGT
GACTATGATCAGTACTCCATGGGTAGCCATATGTGTGCTGCAAAACTCGA
AATTCATCATCATAATGCAGCACAGACTGCCACGAGTATTTAGTCGCCAG
TTCAAGAACCTTCACAGAGTAGGCAAGGTATTCCCTAATCTCCTGCATGG
AGGGAAGcttacttgaaaacaaaagttcataaaaaattCTAAGGTTAGCT
ATGTTAAATTGTTCTACTGTAACAGACGACAGTTTCGGTTTTGTATCTTG
CAGAGAAAGTTTTAGAACACAGTTATTTTCACTTGCaaacactttttttt
cttctgaagGACGTAGCCTCGAAACAAAATCAACTATACAAAGAGGCTTA
CCACGAGTTGGATCATTCGTTCTTGTTGGACGTAGCAGGATTTCGCTTTG
GTTGATTGTTGGACGTTGAGGATGGAGAGTGGATTGTAAATCAAGATTCT
GTTGGGCCCCCACTAAAGGTGAAGGGTTTACAGCAGACGAAACGATGTGC
GGAAGGACGGATGTTGTTGTAGTTTGGGGAATCCGAAGGAATGCTTGATC
CAATCCAATAGACGTTTGGGGGATTCCCTGGCGGGCGGTTGAGATGGGCA
CTAATGGTGGAGCTGATGAAGAAGGGAGGGCGTTTGAAGATTGGGCGGTT
GAAACTCGAGAGGGTGCAGCTTGTCTACTGGCTCTCAAACAAAGAATTGC
CAGTCGTTTGCTTTCAATTTCTCCAGCCAAACTTTTTTCTTCCTCCTCGA
TATCATGCCTGAGGGTTTGTTCCTCATTTTCCAATACAGATAGTTCTTCC
CTTAGCATATCAATTTGGCTATGGGCGGCAGGAAGTCCACTTCGCTCATC
CAAACTGGCAGATCTTCGATGTAGCTGCCGTGAATCCCTTGTTTTTG Run BLAST on NCBI protein sequence of TCONS_00073569-protein >TCONS_00073569-protein ID=TCONS_00073569-protein|Name=TCONS_00073569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
KTRDSRQLHRRSASLDERSGLPAAHSQIDMLREELSVLENEEQTLRHDIE
EEEKSLAGEIESKRLAILCLRASRQAAPSRVSTAQSSNALPSSSAPPLVP
ISTARQGIPQTSIGLDQAFLRIPQTTTTSVLPHIVSSAVNPSPLVGAQQN
LDLQSTLHPQRPTINQSEILLRPTRTNDPTRGKPLCIVDFVSRLRPSEEK
KVFASENNCVLKLSLQDTKPKLSSVTVEQFNIANLRIFYELLFSSKLPSM
QEIREYLAYSVKVLELATKYSWQSVLHYDDEFRVLQHTYGYPWSTDHSHL
HEALLIPRWAAKSTASGAGCNSSNNPGESGNLKSFIVAHLPNGEEICRLY
NSKKGCQRSPCKYSHVCNRKVGSQACGKNHQGCLHSSLEVGPPGQ Run BLAST on NCBI transcript from alignment at scaffold_94:296049..297995 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at scaffold_94:296049..297995 (Clytia hemisphaerica)
CAAAAACAAGGGATTCACGGCAGCTACATCGAAGATCTGCCAGTTTGGAT
GAGCGAAGTGGACTTCCTGCCGCCCATAGCCAAATTGATATGCTAAGGGA
AGAACTATCTGTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATCG
AGGAGGAAGAAAAAAGTTTGGCTGGAGAAATTGAAAGCAAACGACTGGCA
ATTCTTTGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAAC
CGCCCAATCTTCAAACGCCCTCCCTTCTTCATCAGCTCCACCATTAGTGC
CCATCTCAACCGCCCGCCAGGGAATCCCCCAAACGTCTATTGGATTGGAT
CAAGCATTCCTTCGGATTCCCCAAACTACAACAACATCCGTCCTTCCGCA
CATCGTTTCGTCTGCTGTAAACCCTTCACCTTTAGTGGGGGCCCAACAGA
ATCTTGATTTACAATCCACTCTCCATCCTCAACGTCCAACAATCAACCAA
AGCGAAATCCTGCTACGTCCAACAAGAACGAATGATCCAACTCGTGGTAA
GCCTCTTTGTATAGTTGATTTTGTTTCGAGGCTACGTCcttcagaagaaa
aaaaagtgtttGCAAGTGAAAATAACTGTGTTCTAAAACTTTCTCTGCAA
GATACAAAACCGAAACTGTCGTCTGTTACAGTAGAACAATTTAACATAGC
TAACCTTAGaattttttatgaacttttgttttcaagtaagCTTCCCTCCA
TGCAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTTCTTGAACTG
GCGACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGATGAATTTCG
AGTTTTGCAGCACACATATGGCTACCCATGGAGTACTGATCATAGTCACC
TACACGAAGCTCTTCTTATTCCGCGCTGGGCTGCGAAATCTACTGCGTCA
GGGGCTGGGTGTAACTCATCGAATAACCCCGGCGAGTCTGGCAACTTGAA
ATCCTTCATTGTTGCACATCTTCCAAACGGGGAAGAAATATGCAGGTTGT
ACAACAGCAAAAAAGGTTGTCAAAGGTCCCCTTGTAAGTACTCCCATGTT
TGCAACCGGAAAGTTGGTTCGCAGGCCTGTGGGAAGAATCACCAAGGGTG
CCTTCACTCATCTTTAGAGGTAGGTCCTCCGGGCCAATGACCTCTTTCTC
CATTGTCTTTGTCTTCATCTCCGCTTGTCCTTTCTGTTTGGGAAAGGGAA
CTTAGAGATGATCCGGATCGGGCCTTCATTCTCGAAGGGGTCGAAAATGG
ATTTCAGCTCTTGCCCTCAGATTCTTCTATCACTCCAGCGGAGATGGAGA
ACACTATTCTTCTGCCCCCGGTCCAATCTTTAAAGAGAAAGTTGACAAAG
CTATCCTCGAGGAGATTGTGGCCGGTAATTATGTCGCTGTTAATTCTAAG
CCATCAATTGTCAGTGCACTTGGAGCTGTTCCAAAGCCAGATTCTGATGA
CATTCGCATTATTCATGACTGTTCAATGCCTCCGGGCAAAGGAGTTAACT
CCTACATTTCTGTTGAAAAGCAGTCCTTTCAGTCCCTAAGTGATGCCACC
AAACTGATAGGGAAGGACTATTTTATTGCCAAAGTTGACCTTTGTCGTGC
TTACAGGTCTATTCCTGTACACCCGGCCAACCATGATGCTCTAGGGTTAA
AGTGGAAGTTCACAGGAGATGATCACTTTACCTACTTTGTAGGTAAGGCC
CGGTTGTTGACCTACATACTGATGCATGCTCTACGGGTATCGGAGCTGAG
TTTCAAGGAGATTGGTTCTACTCCAACCTCCTGGTTGACTACCCACCCTT
TTCTGGTTCTCACATCAATTACAAGGAGGCCTTATGTGTTGTCCTTGCCC
TGAAACGATGGGCTCCCCTTCTTCAGAATAAGGTGGTCCACGTTCAC Coding sequence (CDS) from alignment at scaffold_94:296049..297995 >TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_94:296049..297995 (Clytia hemisphaerica)
AAAACAAGGGATTCACGGCAGCTACATCGAAGATCTGCCAGTTTGGATGA
GCGAAGTGGACTTCCTGCCGCCCATAGCCAAATTGATATGCTAAGGGAAG
AACTATCTGTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATCGAG
GAGGAAGAAAAAAGTTTGGCTGGAGAAATTGAAAGCAAACGACTGGCAAT
TCTTTGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAACCG
CCCAATCTTCAAACGCCCTCCCTTCTTCATCAGCTCCACCATTAGTGCCC
ATCTCAACCGCCCGCCAGGGAATCCCCCAAACGTCTATTGGATTGGATCA
AGCATTCCTTCGGATTCCCCAAACTACAACAACATCCGTCCTTCCGCACA
TCGTTTCGTCTGCTGTAAACCCTTCACCTTTAGTGGGGGCCCAACAGAAT
CTTGATTTACAATCCACTCTCCATCCTCAACGTCCAACAATCAACCAAAG
CGAAATCCTGCTACGTCCAACAAGAACGAATGATCCAACTCGTGGTAAGC
CTCTTTGTATAGTTGATTTTGTTTCGAGGCTACGTCcttcagaagaaaaa
aaagtgtttGCAAGTGAAAATAACTGTGTTCTAAAACTTTCTCTGCAAGA
TACAAAACCGAAACTGTCGTCTGTTACAGTAGAACAATTTAACATAGCTA
ACCTTAGaattttttatgaacttttgttttcaagtaagCTTCCCTCCATG
CAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTTCTTGAACTGGC
GACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGATGAATTTCGAG
TTTTGCAGCACACATATGGCTACCCATGGAGTACTGATCATAGTCACCTA
CACGAAGCTCTTCTTATTCCGCGCTGGGCTGCGAAATCTACTGCGTCAGG
GGCTGGGTGTAACTCATCGAATAACCCCGGCGAGTCTGGCAACTTGAAAT
CCTTCATTGTTGCACATCTTCCAAACGGGGAAGAAATATGCAGGTTGTAC
AACAGCAAAAAAGGTTGTCAAAGGTCCCCTTGTAAGTACTCCCATGTTTG
CAACCGGAAAGTTGGTTCGCAGGCCTGTGGGAAGAATCACCAAGGGTGCC
TTCACTCATCTTTAGAGGTAGGTCCTCCGGGCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073569-exon-scaffold_94-1491911889:296049..297995 | TCONS_00073569-exon-scaffold_94-1491911889:296049..297995 | Clytia hemisphaerica | exon |
| TCONS_00073569-exon-scaffold_94-1510915933:296049..297995 | TCONS_00073569-exon-scaffold_94-1510915933:296049..297995 | Clytia hemisphaerica | exon |
| TCONS_00073569-exon-scaffold_94-1575043694:296049..297995 | TCONS_00073569-exon-scaffold_94-1575043694:296049..297995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:296049..297995 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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