Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073569
Unique NameTCONS_00073569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=transcript|length=1947bp
GTGAACGTGGACCACCTTATTCTGAAGAAGGGGAGCCCATCGTTTCAGGG
CAAGGACAACACATAAGGCCTCCTTGTAATTGATGTGAGAACCAGAAAAG
GGTGGGTAGTCAACCAGGAGGTTGGAGTAGAACCAATCTCCTTGAAACTC
AGCTCCGATACCCGTAGAGCATGCATCAGTATGTAGGTCAACAACCGGGC
CTTACCTACAAAGTAGGTAAAGTGATCATCTCCTGTGAACTTCCACTTTA
ACCCTAGAGCATCATGGTTGGCCGGGTGTACAGGAATAGACCTGTAAGCA
CGACAAAGGTCAACTTTGGCAATAAAATAGTCCTTCCCTATCAGTTTGGT
GGCATCACTTAGGGACTGAAAGGACTGCTTTTCAACAGAAATGTAGGAGT
TAACTCCTTTGCCCGGAGGCATTGAACAGTCATGAATAATGCGAATGTCA
TCAGAATCTGGCTTTGGAACAGCTCCAAGTGCACTGACAATTGATGGCTT
AGAATTAACAGCGACATAATTACCGGCCACAATCTCCTCGAGGATAGCTT
TGTCAACTTTCTCTTTAAAGATTGGACCGGGGGCAGAAGAATAGTGTTCT
CCATCTCCGCTGGAGTGATAGAAGAATCTGAGGGCAAGAGCTGAAATCCA
TTTTCGACCCCTTCGAGAATGAAGGCCCGATCCGGATCATCTCTAAGTTC
CCTTTCCCAAACAGAAAGGACAAGCGGAGATGAAGACAAAGACAATGGAG
AAAGAGGTCATTGGCCCGGAGGACCTACCTCTAAAGATGAGTGAAGGCAC
CCTTGGTGATTCTTCCCACAGGCCTGCGAACCAACTTTCCGGTTGCAAAC
ATGGGAGTACTTACAAGGGGACCTTTGACAACCTTTTTTGCTGTTGTACA
ACCTGCATATTTCTTCCCCGTTTGGAAGATGTGCAACAATGAAGGATTTC
AAGTTGCCAGACTCGCCGGGGTTATTCGATGAGTTACACCCAGCCCCTGA
CGCAGTAGATTTCGCAGCCCAGCGCGGAATAAGAAGAGCTTCGTGTAGGT
GACTATGATCAGTACTCCATGGGTAGCCATATGTGTGCTGCAAAACTCGA
AATTCATCATCATAATGCAGCACAGACTGCCACGAGTATTTAGTCGCCAG
TTCAAGAACCTTCACAGAGTAGGCAAGGTATTCCCTAATCTCCTGCATGG
AGGGAAGcttacttgaaaacaaaagttcataaaaaattCTAAGGTTAGCT
ATGTTAAATTGTTCTACTGTAACAGACGACAGTTTCGGTTTTGTATCTTG
CAGAGAAAGTTTTAGAACACAGTTATTTTCACTTGCaaacactttttttt
cttctgaagGACGTAGCCTCGAAACAAAATCAACTATACAAAGAGGCTTA
CCACGAGTTGGATCATTCGTTCTTGTTGGACGTAGCAGGATTTCGCTTTG
GTTGATTGTTGGACGTTGAGGATGGAGAGTGGATTGTAAATCAAGATTCT
GTTGGGCCCCCACTAAAGGTGAAGGGTTTACAGCAGACGAAACGATGTGC
GGAAGGACGGATGTTGTTGTAGTTTGGGGAATCCGAAGGAATGCTTGATC
CAATCCAATAGACGTTTGGGGGATTCCCTGGCGGGCGGTTGAGATGGGCA
CTAATGGTGGAGCTGATGAAGAAGGGAGGGCGTTTGAAGATTGGGCGGTT
GAAACTCGAGAGGGTGCAGCTTGTCTACTGGCTCTCAAACAAAGAATTGC
CAGTCGTTTGCTTTCAATTTCTCCAGCCAAACTTTTTTCTTCCTCCTCGA
TATCATGCCTGAGGGTTTGTTCCTCATTTTCCAATACAGATAGTTCTTCC
CTTAGCATATCAATTTGGCTATGGGCGGCAGGAAGTCCACTTCGCTCATC
CAAACTGGCAGATCTTCGATGTAGCTGCCGTGAATCCCTTGTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00073569-protein

>TCONS_00073569-protein ID=TCONS_00073569-protein|Name=TCONS_00073569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
KTRDSRQLHRRSASLDERSGLPAAHSQIDMLREELSVLENEEQTLRHDIE
EEEKSLAGEIESKRLAILCLRASRQAAPSRVSTAQSSNALPSSSAPPLVP
ISTARQGIPQTSIGLDQAFLRIPQTTTTSVLPHIVSSAVNPSPLVGAQQN
LDLQSTLHPQRPTINQSEILLRPTRTNDPTRGKPLCIVDFVSRLRPSEEK
KVFASENNCVLKLSLQDTKPKLSSVTVEQFNIANLRIFYELLFSSKLPSM
QEIREYLAYSVKVLELATKYSWQSVLHYDDEFRVLQHTYGYPWSTDHSHL
HEALLIPRWAAKSTASGAGCNSSNNPGESGNLKSFIVAHLPNGEEICRLY
NSKKGCQRSPCKYSHVCNRKVGSQACGKNHQGCLHSSLEVGPPGQ
Run BLAST on NCBI

transcript from alignment at scaffold_94:296049..297995

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at scaffold_94:296049..297995 (Clytia hemisphaerica)
CAAAAACAAGGGATTCACGGCAGCTACATCGAAGATCTGCCAGTTTGGAT GAGCGAAGTGGACTTCCTGCCGCCCATAGCCAAATTGATATGCTAAGGGA AGAACTATCTGTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATCG AGGAGGAAGAAAAAAGTTTGGCTGGAGAAATTGAAAGCAAACGACTGGCA ATTCTTTGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAAC CGCCCAATCTTCAAACGCCCTCCCTTCTTCATCAGCTCCACCATTAGTGC CCATCTCAACCGCCCGCCAGGGAATCCCCCAAACGTCTATTGGATTGGAT CAAGCATTCCTTCGGATTCCCCAAACTACAACAACATCCGTCCTTCCGCA CATCGTTTCGTCTGCTGTAAACCCTTCACCTTTAGTGGGGGCCCAACAGA ATCTTGATTTACAATCCACTCTCCATCCTCAACGTCCAACAATCAACCAA AGCGAAATCCTGCTACGTCCAACAAGAACGAATGATCCAACTCGTGGTAA GCCTCTTTGTATAGTTGATTTTGTTTCGAGGCTACGTCcttcagaagaaa aaaaagtgtttGCAAGTGAAAATAACTGTGTTCTAAAACTTTCTCTGCAA GATACAAAACCGAAACTGTCGTCTGTTACAGTAGAACAATTTAACATAGC TAACCTTAGaattttttatgaacttttgttttcaagtaagCTTCCCTCCA TGCAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTTCTTGAACTG GCGACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGATGAATTTCG AGTTTTGCAGCACACATATGGCTACCCATGGAGTACTGATCATAGTCACC TACACGAAGCTCTTCTTATTCCGCGCTGGGCTGCGAAATCTACTGCGTCA GGGGCTGGGTGTAACTCATCGAATAACCCCGGCGAGTCTGGCAACTTGAA ATCCTTCATTGTTGCACATCTTCCAAACGGGGAAGAAATATGCAGGTTGT ACAACAGCAAAAAAGGTTGTCAAAGGTCCCCTTGTAAGTACTCCCATGTT TGCAACCGGAAAGTTGGTTCGCAGGCCTGTGGGAAGAATCACCAAGGGTG CCTTCACTCATCTTTAGAGGTAGGTCCTCCGGGCCAATGACCTCTTTCTC CATTGTCTTTGTCTTCATCTCCGCTTGTCCTTTCTGTTTGGGAAAGGGAA CTTAGAGATGATCCGGATCGGGCCTTCATTCTCGAAGGGGTCGAAAATGG ATTTCAGCTCTTGCCCTCAGATTCTTCTATCACTCCAGCGGAGATGGAGA ACACTATTCTTCTGCCCCCGGTCCAATCTTTAAAGAGAAAGTTGACAAAG CTATCCTCGAGGAGATTGTGGCCGGTAATTATGTCGCTGTTAATTCTAAG CCATCAATTGTCAGTGCACTTGGAGCTGTTCCAAAGCCAGATTCTGATGA CATTCGCATTATTCATGACTGTTCAATGCCTCCGGGCAAAGGAGTTAACT CCTACATTTCTGTTGAAAAGCAGTCCTTTCAGTCCCTAAGTGATGCCACC AAACTGATAGGGAAGGACTATTTTATTGCCAAAGTTGACCTTTGTCGTGC TTACAGGTCTATTCCTGTACACCCGGCCAACCATGATGCTCTAGGGTTAA AGTGGAAGTTCACAGGAGATGATCACTTTACCTACTTTGTAGGTAAGGCC CGGTTGTTGACCTACATACTGATGCATGCTCTACGGGTATCGGAGCTGAG TTTCAAGGAGATTGGTTCTACTCCAACCTCCTGGTTGACTACCCACCCTT TTCTGGTTCTCACATCAATTACAAGGAGGCCTTATGTGTTGTCCTTGCCC TGAAACGATGGGCTCCCCTTCTTCAGAATAAGGTGGTCCACGTTCAC

Coding sequence (CDS) from alignment at scaffold_94:296049..297995

>TCONS_00073569 ID=TCONS_00073569|Name=TCONS_00073569|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_94:296049..297995 (Clytia hemisphaerica)
AAAACAAGGGATTCACGGCAGCTACATCGAAGATCTGCCAGTTTGGATGA
GCGAAGTGGACTTCCTGCCGCCCATAGCCAAATTGATATGCTAAGGGAAG
AACTATCTGTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATCGAG
GAGGAAGAAAAAAGTTTGGCTGGAGAAATTGAAAGCAAACGACTGGCAAT
TCTTTGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAACCG
CCCAATCTTCAAACGCCCTCCCTTCTTCATCAGCTCCACCATTAGTGCCC
ATCTCAACCGCCCGCCAGGGAATCCCCCAAACGTCTATTGGATTGGATCA
AGCATTCCTTCGGATTCCCCAAACTACAACAACATCCGTCCTTCCGCACA
TCGTTTCGTCTGCTGTAAACCCTTCACCTTTAGTGGGGGCCCAACAGAAT
CTTGATTTACAATCCACTCTCCATCCTCAACGTCCAACAATCAACCAAAG
CGAAATCCTGCTACGTCCAACAAGAACGAATGATCCAACTCGTGGTAAGC
CTCTTTGTATAGTTGATTTTGTTTCGAGGCTACGTCcttcagaagaaaaa
aaagtgtttGCAAGTGAAAATAACTGTGTTCTAAAACTTTCTCTGCAAGA
TACAAAACCGAAACTGTCGTCTGTTACAGTAGAACAATTTAACATAGCTA
ACCTTAGaattttttatgaacttttgttttcaagtaagCTTCCCTCCATG
CAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTTCTTGAACTGGC
GACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGATGAATTTCGAG
TTTTGCAGCACACATATGGCTACCCATGGAGTACTGATCATAGTCACCTA
CACGAAGCTCTTCTTATTCCGCGCTGGGCTGCGAAATCTACTGCGTCAGG
GGCTGGGTGTAACTCATCGAATAACCCCGGCGAGTCTGGCAACTTGAAAT
CCTTCATTGTTGCACATCTTCCAAACGGGGAAGAAATATGCAGGTTGTAC
AACAGCAAAAAAGGTTGTCAAAGGTCCCCTTGTAAGTACTCCCATGTTTG
CAACCGGAAAGTTGGTTCGCAGGCCTGTGGGAAGAATCACCAAGGGTGCC
TTCACTCATCTTTAGAGGTAGGTCCTCCGGGCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045671XLOC_045671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073569-proteinTCONS_00073569-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073569-exon-scaffold_94-1491911889:296049..297995TCONS_00073569-exon-scaffold_94-1491911889:296049..297995Clytia hemisphaericaexon
TCONS_00073569-exon-scaffold_94-1510915933:296049..297995TCONS_00073569-exon-scaffold_94-1510915933:296049..297995Clytia hemisphaericaexon
TCONS_00073569-exon-scaffold_94-1575043694:296049..297995TCONS_00073569-exon-scaffold_94-1575043694:296049..297995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:296049..297995 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198608 0.22564 0.257179 0.259218 5.50207 5.77548 2.98552 4.38747 2.83726 2.17701 1.73058 2.83514 1.30567 1.89267 1.20277 1.13987 1.25859 0.962802 0.840684 0.975121 1.31861 0.780262 0.195136 0.308121 0.543622 1.12057 0.457159 0.340208 0.203432 0.283123
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top