TCONS_00073562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073562
Unique NameTCONS_00073562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073562 ID=TCONS_00073562|Name=TCONS_00073562|organism=Clytia hemisphaerica|type=transcript|length=492bp
ATTTTCCcttatattttagcgaataTCACGAACATTCAGTAAATCTTCAC
GTCCTGTCTCTGCCTGCGGTAACAGTAAACACGTCCCGAAAATGTCCACC
AGAGAAGGTTTGAGGAATAACCCAGTACCCACTCCTGTAGGAAGAGAATA
CCAGTTACACAATGTTAGAAAGAATCGCGAGTCCCTGGTCAAAACCATGG
AAGAAAGAATTGGAATCCTTGACGAATTAATGGAAAACATCACGAACTAC
CACACTGTCAAGTCAGAGCTATCGAGTCTAGATCACGATTTACAAGAGTT
CCACAATTATTGTGCGAGAATCAAAACCCTAAACGAAAGCGAAAACGTCC
ATGATGATGAACTATTCGTTGATACATTTGACGGAAAGGTGTTCGACACA
AAGACAAACGTGTTGAAGTGGATCAGACGATACGAAGAAAGCGTTCAGCC
AAAGAAAAGGACAAGTCAAGAAGGGAGCCATCGTTCTAGCCG
Run BLAST on NCBI

protein sequence of TCONS_00073562-protein

>TCONS_00073562-protein ID=TCONS_00073562-protein|Name=TCONS_00073562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSTREGLRNNPVPTPVGREYQLHNVRKNRESLVKTMEERIGILDELMENI
TNYHTVKSELSSLDHDLQEFHNYCARIKTLNESENVHDDELFVDTFDGKV
FDTKTNVLKWIRRYEESVQPKKRTSQEGSHRSS
Run BLAST on NCBI

transcript from alignment at scaffold_94:173131..173622

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073562 ID=TCONS_00073562|Name=TCONS_00073562|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_94:173131..173622 (Clytia hemisphaerica)
CGGCTAGAACGATGGCTCCCTTCTTGACTTGTCCTTTTCTTTGGCTGAAC GCTTTCTTCGTATCGTCTGATCCACTTCAACACGTTTGTCTTTGTGTCGA ACACCTTTCCGTCAAATGTATCAACGAATAGTTCATCATCATGGACGTTT TCGCTTTCGTTTAGGGTTTTGATTCTCGCACAATAATTGTGGAACTCTTG TAAATCGTGATCTAGACTCGATAGCTCTGACTTGACAGTGTGGTAGTTCG TGATGTTTTCCATTAATTCGTCAAGGATTCCAATTCTTTCTTCCATGGTT TTGACCAGGGACTCGCGATTCTTTCTAACATTGTGTAACTGGTATTCTCT TCCTACAGGAGTGGGTACTGGGTTATTCCTCAAACCTTCTCTGGTGGACA TTTTCGGGACGTGTTTACTGTTACCGCAGGCAGAGACAGGACGTGAAGAT TTACTGAATGTTCGTGAtattcgctaaaatataagGGAAAAT

Coding sequence (CDS) from alignment at scaffold_94:173131..173622

>TCONS_00073562 ID=TCONS_00073562|Name=TCONS_00073562|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_94:173131..173622 (Clytia hemisphaerica)
GCTAGAACGATGGCTCCCTTCTTGACTTGTCCTTTTCTTTGGCTGAACGC
TTTCTTCGTATCGTCTGATCCACTTCAACACGTTTGTCTTTGTGTCGAAC
ACCTTTCCGTCAAATGTATCAACGAATAGTTCATCATCATGGACGTTTTC
GCTTTCGTTTAGGGTTTTGATTCTCGCACAATAATTGTGGAACTCTTGTA
AATCGTGATCTAGACTCGATAGCTCTGACTTGACAGTGTGGTAGTTCGTG
ATGTTTTCCATTAATTCGTCAAGGATTCCAATTCTTTCTTCCATGGTTTT
GACCAGGGACTCGCGATTCTTTCTAACATTGTGTAACTGGTATTCTCTTC
CTACAGGAGTGGGTACTGGGTTATTCCTCAAACCTTCTCTGGTGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045664XLOC_045664Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073562-proteinTCONS_00073562-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073562-exon-scaffold_94-1491911889:173131..173622TCONS_00073562-exon-scaffold_94-1491911889:173131..173622Clytia hemisphaericaexon
TCONS_00073562-exon-scaffold_94-1510915933:173131..173622TCONS_00073562-exon-scaffold_94-1510915933:173131..173622Clytia hemisphaericaexon
TCONS_00073562-exon-scaffold_94-1575043694:173131..173622TCONS_00073562-exon-scaffold_94-1575043694:173131..173622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:173131..173622 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250726 0.244497 0.283885 0.138869 1.01435 0.801557 0.322348 1.65978 0 1.43939 0 0.333964 0.083375 0.519515 0 0.763927 0.188219 0.482296 0 0.139451 0.121208 0.177363 0.431216 0 0.942177 0.360373 0.171898 0 0 0.141765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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