TCONS_00073549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073549
Unique NameTCONS_00073549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073549 ID=TCONS_00073549|Name=TCONS_00073549|organism=Clytia hemisphaerica|type=transcript|length=2493bp
cagaaataaagaaacaaaaacataaacataaaatgGCTGCTCAAAAACTA
ACAAAACATTACCAGAAACCATGGCAACTGTTGGTCTCTGTTTGTCTCAC
TCGTACAAATACCGTCACTAAAGAATTAACGGACATCCAGACAAGATATG
CAGAATTAATGGAAAAAGTTGAGCTGGAGAATTCAGTGTATAATGATTAC
GAGACGAGGAAACTAGAACTAAATCACGTGATGAATAGAACAGGAgctca
acaacaaaaaaaattgagtgaaaaagaagaagagaaaaTTACTGAAGCTT
CAAGAATGCTTGCTAATATACANGCTAAATCACGTAATGAATAGAACAGG
AgctcaacaacaaaaaaaattgagtgaaaaagaagaagagaaaaTTACTG
AAGCTTCAAGAATGCTTGCTAATATACAGGACCAAGAAGATATTTGGGCT
CAAGACACAGCCAAGCTTGAAGTTGCATCAAAGACAAGTTTTCATGACAA
TAACAAACAATCACCACATCGATTGATCGATCAAACTTTACACATGAGTG
TTCGAGATGATAGTTTATTAAACGAACCCTCTACCGTGCTTCCCTATACA
CCCTTGAACGAAGGAGAAACTCTGCGACAGGCATCAGAACGTCTCCTAGG
GACATATGGTATTCCAACATCGAACACGTTATTTCTTTCCAATGCTCCCT
GTGGAGTGATCAAGATTCGTTTCAAGGAGAACGAAGAACGTGGACAGGTC
TACCAAGGTGCTAAGgtgtTCTTTACCAAGGTTCGTATGACGTCACTGGA
TAACATCGACACTCAAAATACCCAAAACGACTGGTTATCGGTCAGTGAAA
TACAAGAACAATCCCAAAGCGAATATTTTCAAAGGCTTGAACGGTTttta
tagaagaaaaaaaatatttcttttctactGCGAATCGGCATGAAGTAAGT
CATAGTTTCGAGACGTTGATATCGTAATTTGACTCATTTTGGATGAATCt
acttttgtgaaaaattttgagacaAAAAATGGCTCATGTTTTAAGTGATT
CCATATCTTGCAATTATCGGAGCTTTTAAAACTCCAATAAGATCTATTGA
GACTACGTGATAATCTTGACTAAGACCATGAATTTAatatagacactgga
taaacaacgtataaaacggtggagagcgaagtattgtctttcttttgttt
aagaaaacaatcgaggatctagctttgtccgcaaaggacaactgtcatgg
tgGCTCGAAgctctctgattttgaaaaatctcatttctaaaaaatcttta
tctttttgtacttttactcGCCAAAAATTTGGAAGtaaatgctaaaatac
ttaACGGATACATTTATTAAATCTGGtgtgacaaaaacatcatcagacaa
gaaaaatcTAACTAAAGGCCTAAAATGACACAGAATTTTAAGTTGGCGAT
ATCTTTCTAACATCTTTCTGAGAAGAGCTATGATTGACATACAatagact
tgagtgtcttggcttcaccgtgatatgaaaatatttttgaggcTCGTGGT
GGATCGTTGGTCTTATTGAGGTTAAAATTTCTGGTGTCGACATTCGATTT
TTCATACATAGGATGTTTTTCGTATCTTTCTTgcaacttgaaacgtcata
aagacacataattagcaattattttgatgtgttcacctttctaaggaaaa
attaattttcatttgggaattgaaatgacTGTGTTAAGATGAAAAATCGT
TTAATgaaggaaggagagtgaacaataatgtcattactgcggacaaggct
agaacatgagaaatcaatgaaaatataactcattgtttatccagtgtcta
taataaattcttagAGATAATTTTTATGAGAAGACACCCAATCTGTATGT
TTTATTTCCTCACTTATGGCTAGCTTTTCAGTAAGTTTACTCAACTTTCA
AATCAATCTCTGGCTTATGatcaaatcttgaaaatatgataaaattggGC
CAAATCAGTGGTCAGAAAAACGATTTGAATGTTGATTGAACTTTTTAAAA
GATCTAAGGGTATGCGTAACAGTATTTCTGAATTTTTACCTTATATGACA
AGGAACTGTGCTGAAGTGCTGAATTTCATTCAAAGAAAGACAAACTGTAT
CACATTAAGGGTTGGTACAAGAAAAGTTCCGCAGCCTCTTTTTACGTATG
TCATTTGTTATACGGTTTTCTTTTCGTCGTTCGATCATCTCTTGATAGGT
CTTGAAAATTTCATCGAAACTTACGAATCTGAGATTTCTCTCACGTGCGC
GAATGGAGTTTAATTATGGTTTTCGATTAATTTTACCCTTCCCGTAAAAA
GGTTTCGGTGCCCTTTAGTTTTTCATATTGTAAGAATCCTCATATCTTGA
GGattttcctctttctaaaagcaattgaagattataaaaatgtaaatatt
attatcttaaaattttttgtAATGAAGAAGAGTTAAGAATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_94:449851..455333-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073549 ID=TCONS_00073549|Name=TCONS_00073549|organism=Clytia hemisphaerica|type=transcript|length=5483bp|location=Sequence derived from alignment at scaffold_94:449851..455333- (Clytia hemisphaerica)
CAGAAATAAAGAAACAAAAACATAAACATAAAATGGCTGCTCAAAAACTA ACAAAACATTACCAGAAACCATGGCAACTGTTGGTCTCTGTTTGTCTCAC TCGTACAAATACCGTCACTAAAGAATTAACGGACATCCAGACAAGATATG CAGAATTAATGGAAAAAGTTGAGCTGGAGAATTCAGTGTATAATGATTAC GAGACGAGGAAACTAGAACTAAATCACGTGATGAATAGAACAGGAGCTCA ACAACAAAAAAAATTGAGTGAAAAAGAAGAAGAGAAAATTACTGAAGCTT CAAGAATGCTTGCTAATATACANGCTAAATCACGTAATGAATAGAACAGG AGCTCAACAACAAAAAAAATTGAGTGAAAAAGAAGAAGAGAAAATTACTG AAGCTTCAAGAATGCTTGCTAATATACAGGTACCACATTCTTTTTTTCGT CTTAAATAGGACGCCCCCTGTTGGAACTGCACCTTGCTTTTTGGTTACTA CAGAAAGAAAATTTGGCGGATTGACCCGAAATTTGTCAGATTAAGTTCAC GTTCAAAATTTCTCATTCTGGCCATCTGTCAAATTTACTAACGATTTTGG CAAAACATCCCTCAACCGCCAAATCAAATTCCTGCCAATTTTATCTTCTC TAGCGATCCGCCAAATCAATTTCGTCCTGCTGAAATTTCAAAGCACATGA AACTTTTATGTATAAGCCATCAAATTTTGAGTTAAAATATTAACCAGGTC GGGTTTTACGACTTTATTGCCAACACAGATTGTAAAACCCAATCAATCCA AATTACTTCAAATTTTACAGAATGAAGATTTGTTTCAGGTTACTCTTTAT TTATCAAAATCGGAGGCCCATGATGTTCTTATACCGGGTGTGTCAAAAAA AACGCGCCTATTTTTCTATTTTTGACGTACAAATTTCTATCAAACAAAGA CAAATGAAATTTTCAGGGAAGATTTGAAATTTAATTTTTTATCCTTGGTG AAAATTATACATTTCTATGTTCATTTAAAACGACTTTATGATAATTCCGC TGACTTATGTCAAATTTTCATTGTTCACAGATTTTCATAGTTAAATTTTT CCATATAAACAAGAAGCTAAAGTACGCTTCGTTTTTACTCTTTTATTTTG TTTTGCTACTATTAAAACATTAAAATGGCATCATTTTTTCATTTCATAGT TTAAGTTTTGTTCCAGGGTCAATATTTGATAAATTCTAACTAGTTCCAAC CAAGCCATTTCTTACGTCAATTGCGACAACAAAAAAAGGACNTATTAAAA TGGCATCATTTTTTCATTTCATAGGTTAAGTTTTGTTCCAGGGTCAATAT TTGATAAATTCTAACTAGTTCCAACCAAGCCATTTCTTACGTCAATTGCG ACAACAAAAAAAGGACNTTCGAAACAAAGTGAATACACAATTTGATTGTT TTTATTGAAACGATAAGCACATTGAACTTATATTGCCTTTGTTATTTTTA AGTAATTATAGAACTTTGCTACTTCCCAAAATACTATGCACAGTTTGGCA ATAAGTTCATTATCGTAAAAAGATCGTAAAATGTGTTATACTATATGACT GAAAAACTGTTTTATCATCACTACCCCCGTTTTTATTAAAAAGTTGGAGA TTTGATGTTTCATAGAAAAATGCTACCAAGGGGTATTTCGGGTCCCATAT CTTCCGAACGACTTTTCCGTTTGCCTTGAAATTTAACAATCTTCTTGAAC TAAGGTTGAACTACCACTGGTGTAAAAATGACCGTTGTAGCATAAGTATA AAAAAAGCTCAATTTTTGCAATCGCAAATTAAACCGCTAAAACTCGCGAA TTTTTCAACAAAAAATACATTCAAATATAGCGCTTTTGATTTTCTAAATG AAGCAAAAACATTTTTTGCAATTATATCGGACTATCAAAAGTTACAGGCA TTCTTGTTTCCACTGCCAATTATATCTGGACAGACTTTAGTGTGATGAAG TTAATCGTTTTAACCTCTTCCAAAACTAGTGGATTTTTAACACTTTAGCC GATTGCAAAACGTTTAATGTATATCTAACATATAGTCGAACTTTTGTGAA ATTTTCCTGTTTTTAGAAGTTTTAAATTAAAATTAAATTTCCCCGAGCTC CGAAAATTTCTATGTCGAGTGCTAGATAAACTAAGACTCTCTTTTGATGA AAGCACAACATTAAAAAAGGTCTTTATAGAATATCTTCCGTAAGCTCATT GTTTTCTTCTTAGGACCAAGAAGATATTTGGGCTCAAGACACAGCCAAGC TTGAAGTTGCATCAAAGACAAGTTTTCATGACAATAACAAACAATCACCA CATCGATTGATCGATCAAACTTTACACATGAGTGTTCGAGATGATAGTTT ATTAAACGAACCCTCTACCGTGCTTCCCTATACACCCTTGAACGAAGGAG AAACTCTGCGACAGGTAATTTAATATCTTTAACAACGTTGGTAACATTGC GATGTTAGGGACGTTAGATGAACGTTGATTCAATGACGTTTTTTGCCAGC TTTGTCCGGAGATCAGAAAATAGTAGGAGGCCAACCTTTAGAATCAATAG CATCCAATGGTATCAGTCATTCTCGTTTAATTTGAGTTTGAAAAATATGT AGTCAATCTTTTACTAATTTTTGGGGTTTTGCTTACAATGTCAGTTTTTT AGCCATAAAGACTTTTGCGAGGCCTAATTCGCGCACTCTCAAAAATGTTC CAAAATCCTATCTTTCGAACCAATCACATGCGCTTGAGTCCCAAGAAAGA GGCTACGGATCCTGAAGGTTTTTCACGTCCAAGACCAGCTGGATCGACTA TCATTGAGCTGAACGGACCATATTGGAAAGAGCAGGGATTCGAACCGTGA ACCCCTTGTTTCTGGAGCTGGAGCTTTAACCATTCGGCCATCGCTCCTAA ACTTTTTCGTCTCGTTTCCTTTCTTTGAAAGAACCTTTCAATATTAATCC TCAATCAATTAGCTCTAGAAAGGTGACGTTTTCGGTTTTCAATTTGCCAT GACATAACATACCAATCCATAAATCTTTAATAAAATAAGTCTTCTCAATA GATCTTATTGGAGTTTTTGATTTTTCCAAAAAAAGCGATGCATCGAGGGA TTGTTTCGGGGGTATTATAATGTAAATCTCTTAAGACTTCCTCGAGGGAA TTCTATTGTAATACCCCCAAAACAATCCCACAATGCATCGCTGTTTTAGA AAAATCAAAAATTTCGATAAGGTCTATTCTACCTATTTTCCTGACCAAAA CTCTCGTTGAAAAGATAAGCATAGGATAATATTATTATATTATATTATTC TTTTCTTCTTCTACCAGGCATCAGAACGTCTCCTAGGGACATATGGTATT CCAACATCGAACACGTTATTTCTTTCCAATGCTCCCTGTGGAGTGATCAA GATTCGTTTCAAGGAGAACGAAGAACGTGGACAGGTCTACCAAGGTGCTA AGGTGATGCGACGAGACAAGCAAAAAAATTCTAAAATCTACAGTGAAGTC TCCATAACTCGAACCTTTATTACTCAAAAAGAGGAAAAGAAAAACATTTT TTTGCTATATCAGCATAATGTAATACTATTATATCAGCATAATATAGCAA TAGGCATAAACTGCCCTGATATGAACTATGTGCCTGTCTTGAAACGGGAA CGCTTATGTAAAAATAAAACCTTTAAGCTGAATAAATCTACGTTTTTATT TTCAGGTGTTCTTTACCAAGGTTCGTATGACGTCACTGGATAACATCGAC ACTCAAAATACCCAAAACGACTGGTTATCGGTCAGTGAAATACAAGAACA ATCCCAAAGCGAATATTTTCAAAGGCTTGAACGGTTTTTATAGAAGAAAA AAAATATTTCTTTTCTACTGCGAATCGGCATGAAGTAAGTCATAGTTTCG AGACGTTGATATCGTAATTTGACTCATTTTGGATGAATCTACTTTTGTGA AAAATTTTGAGACAAAAAATGGCTCATGTTTTAAGTGATTCCATATCTTG CAATTATCGGAGCTTTTAAAACTCCAATAAGATCTATTGAGACTACGTGA TAATCTTGACTAAGACCATGAATTTAATATAGACACTGGATAAACAACGT ATAAAACGGTGGAGAGCGAAGTATTGTCTTTCTTTTGTTTAAGAAAACAA TCGAGGATCTAGCTTTGTCCGCAAAGGACAACTGTCATGGTGGCTCGAAG CTCTCTGATTTTGAAAAATCTCATTTCTAAAAAATCTTTATCTTTTTGTA CTTTTACTCGCCAAAAATTTGGAAGTAAATGCTAAAATACTTAACGGATA CATTTATTAAATCTGGTGTGACAAAAACATCATCAGACAAGAAAAATCTA ACTAAAGGCCTAAAATGACACAGAATTTTAAGTTGGCGATATCTTTCTAA CATCTTTCTGAGAAGAGCTATGATTGACATACAATAGACTTGAGTGTCTT GGCTTCACCGTGATATGAAAATATTTTTGAGGCTCGTGGTGGATCGTTGG TCTTATTGAGGTTAAAATTTCTGGTGTCGACATTCGATTTTTCATACATA GGATGTTTTTCGTATCTTTCTTGCAACTTGAAACGTCATAAAGACACATA ATTAGCAATTATTTTGATGTGTTCACCTTTCTAAGGAAAAATTAATTTTC ATTTGGGAATTGAAATGACTGTGTTAAGATGAAAAATCGTTTAATGAAGG AAGGAGAGTGAACAATAATGTCATTACTGCGGACAAGGCTAGAACATGAG AAATCAATGAAAATATAACTCATTGTTTATCCAGTGTCTATAATAAATTC TTAGAGATAATTTTTATGAGAAGACACCCAATCTGTATGTTTTATTTCCT CACTTATGGCTAGCTTTTCAGTAAGTTTACTCAACTTTCAAATCAATCTC TGGCTTATGATCAAATCTTGAAAATATGATAAAATTGGGCCAAATCAGTG GTCAGAAAAACGATTTGAATGTTGATTGAACTTTTTAAAAGATCTAAGGG TATGCGTAACAGTATTTCTGAATTTTTACCTTATATGACAAGGAACTGTG CTGAAGTGCTGAATTTCATTCAAAGAAAGACAAACTGTATCACATTAAGG GTTGGTACAAGAAAAGTTCCGCAGCCTCTTTTTACGTATGTCATTTGTTA TACGGTTTTCTTTTCGTCGTTCGATCATCTCTTGATAGGTCTTGAAAATT TCATCGAAACTTACGAATCTGAGATTTCTCTCACGTGCGCGAATGGAGTT TAATTATGGTTTTCGATTAATTTTACCCTTCCCGTAAAAAGGTTTCGGTG CCCTTTAGTTTTTCATATTGTAAGAATCCTCATATCTTGAGGATTTTCCT CTTTCTAAAAGCAATTGAAGATTATAAAAATGTAAATATTATTATCTTAA AATTTTTTGTAATGAAGAAGAGTTAAGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045652XLOC_045652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073549-exon-scaffold_94-1575043694:454905..455333TCONS_00073549-exon-scaffold_94-1575043694:454905..455333Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1575043694:452870..453070TCONS_00073549-exon-scaffold_94-1575043694:452870..453070Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1575043694:451832..451966TCONS_00073549-exon-scaffold_94-1575043694:451832..451966Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1575043694:449851..451578TCONS_00073549-exon-scaffold_94-1575043694:449851..451578Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1510915933:454905..455333TCONS_00073549-exon-scaffold_94-1510915933:454905..455333Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1510915933:452870..453070TCONS_00073549-exon-scaffold_94-1510915933:452870..453070Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1510915933:451832..451966TCONS_00073549-exon-scaffold_94-1510915933:451832..451966Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1510915933:449851..451578TCONS_00073549-exon-scaffold_94-1510915933:449851..451578Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1491911889:454905..455333TCONS_00073549-exon-scaffold_94-1491911889:454905..455333Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1491911889:452870..453070TCONS_00073549-exon-scaffold_94-1491911889:452870..453070Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1491911889:451832..451966TCONS_00073549-exon-scaffold_94-1491911889:451832..451966Clytia hemisphaericaexon
TCONS_00073549-exon-scaffold_94-1491911889:449851..451578TCONS_00073549-exon-scaffold_94-1491911889:449851..451578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:449851..455333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.6445 15.6092 16.092 14.0726 7.80127 4.63606 7.10342 8.03066 3.50347 3.23103 4.24413 2.56857 2.78566 2.30702 3.44456 3.29245 3.35787 3.2961 1.40042 1.66992 5.5985 5.92448 7.76326 5.80561 3.91435 6.44223 3.18957 2.41386 4.28764 4.59083
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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