TCONS_00073543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073543
Unique NameTCONS_00073543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1055

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=transcript|length=1055bp
AGAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAA
ATAAACACTAATAGGAAATATGGACTTATCACTGACGAGAAATACCCACC
GCAGATGatcaaagaaatgaaaaggaaaaacaacaagcgtgtttttcaaa
atgttgaccGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATA
CCATACAAGTTCAATAAAGACTtCACAATCGCTGAAcaacaacaaattaa
aaacGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACG
CATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTC
GGAAAACGAGTAGGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAACACTA
TCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGATGGAT
GTTTTCTTGAAGgAATCATTGCACACGAGATGATGCATGCCATGGGTTTC
CATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAAG
AGAAAACATTCTCGGTGGAtgcgaaaataattttgatatcGCCACTAACA
CTGTCCCTGATTACGCTATCTCGCCTTATGATTATGGAAGTGTGATGCAT
TATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATCCCTAA
GAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCTCTCCA
ATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGGGATGGAA
CTGgagcggaaaaattaatgcaatttgaggacatgcattaagttacccga
gtatcaagttttcaaaagtttggCGCCAAGGCTTTGCAACGGACTCAATG
GAACAAGCAACCAAACATTACAACAAATATGGAAGTTTGTCTGGGTTCAA
AATGTCATTTGTAAAATACAATCATTATACCTACAAAGGATATTATCATT
AGgcttttattttaagttttccttgttttttcttttttttttttggcgtt
TTGAG
Run BLAST on NCBI

protein sequence of TCONS_00073543-protein

>TCONS_00073543-protein ID=TCONS_00073543-protein|Name=TCONS_00073543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
KNGGKNPRIGHKGTSEINTNRKYGLITDEKYPPQMIKEMKRKNNKRVFQN
VDRYYWKPNRNGVLEIPYKFNKDFTIAEQQQIKNVIKKVNGYLSGCHNNA
WVPAAARHYGKTVLEFGKRVGCWSYVGKVGEHYLESFPNAIQPLSIDDGC
FLEGIIAHEMMHAMGFHHEHSRPDRDQFVQIRRENILGGCENNFDIATNT
VPDYAISPYDYGSVMHYGLFDFTSNGKQVIIPKKTIPPGVQVGQRNGLSN
GDIAELRRLFKC
Run BLAST on NCBI

transcript from alignment at scaffold_94:364450..376201-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=transcript|length=11752bp|location=Sequence derived from alignment at scaffold_94:364450..376201- (Clytia hemisphaerica)
AGAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAA ATAAACACTAATAGGAAATATGGTGAGAACTTTTTTATTCGAACCTCTGG AAGGCTTGGATTGAGGTTTTGAATACTAGGGTCATAGGATCACTAACGAC CCGAAATAGATATTTTCATGAAATGCATCACTAGCATTGCTTACACCGTT TTCGAAAAGTTGCTATGGTAATTAATTCCCAAAAGTGTTGATAAGAAGTT CAATCTTTTTCTGAGGAATAGATTAGATAAAACTATTTTCCGGAAACTTT ACGTCGATTCCAGGACTTATCACTGACGAGAAATACCCACCGCAGATGAT CAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGACC GTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAAG TTCAATAAAGACTGTGAGTAAAGTTATTAATATTTTTCAAGATTCTTTTG AATGATTTAATTTAAAAAAGTTATAATTTAAAGCATAAAACACCAACCTT GAACCCAGAGCACAGCTTATGATGGTAGCACCCAAGATTTCACTTGGTAT GATTCTGTATAGCCGACAATTTATCAAGTCCGTCAATAAGATAAAAAATG TGGTGCAAGCAGCTCTGGGTACGAGATTAGGTTCAAACTGTAAAAAACTC CCATATAAAAGTCTAAAACCTAGGCTACACTCATCTGGGAAATGAATGCA CCGTAAATGAAAACATGGAATTGTAAACAGTGTTCATATAGTGCCCTAGA AAGAGAAATTATAATATGATAAGTAAGTACCTCGTTACAATTTTCTGAAA CTTTAAACTTCGCTGATTTTAAATATGTATTTATCCTTTCTTCTCCAAAG CGCAATTTATCAAAGTGTATGGACTGCCAATTTTGTTTGGCAAAGACTTT AAAAAGCTTACGATGCTTATGAATTGGATAGTGTCGCCTTTCGTACTAAC TAACTTTAATTTTCCTTTTAGTCACAATCGCTGAACAACAACAAATTAAA AACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACGC ATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTCG GAAAACGAGTAGGGTAGGAATTTCACATCATTCAAATACAGTGTGGCCAG AAAGAAAGTAAACAAAAATTATAGGAATGAGAAATTTTCTTATGATGACA TAATTGACTTAATTGTTTTTTTTTTAAACTAAACTTCAAAAATCCATTTA ACCCTATTTGTATTAGGGGGGGTGCTTTTTTTGTTCGGAGGTCAAATTAT AAGAACAAAGGAAATTTTCGGTTTTTGCTCACTTTGGACATGATGAGTGA AGTCATCAAAAAAAATTTTTGTCAAAAGTTACCTTATGTGACAAGGATAT TGTGTGCCAAATTTCATTTAAAAAGACCCACTAGATCAAAAGTTAAGGGG TGGTACAGGAAAAGCCTCCCCCCCTAGTTTTGAACCGTCCCTAAAAGCCT AGTATGAATAGGGTTAATAATAATACAACTTATGGTACTATATGAGATCG TTCAATTCTTTTGGTCATGTACTATTACCGAGTTTATGTTTGTGTGTTTT TCAGCGACGGAGACAGTAAGGTTATAATTTGACTAGATCATGACCAACTG AGGACGACGGTAAATCAGCACTTTTACCGTTCTCGATTTTGCCAGACAGC AGTGAGGCTTTTTCCAGATCGCTTCAGTCACTTTACCGTCCTCAAAAGTG CAAATACCATAAACTTGCTAGTAGGTCTAAACCAAAAGCGCACCGCAGCC AACCTGTTTTTTGACTCTGCCCAAATAAAAAAAGTTGAGCTTGGAATTTT TTTTAAGTTGAAGCTTAGAATTGTATTGTTTACGTTTACAGGTATTTGAA TTTAAACAATATCAAAAAAATTAAAATTGTGGAGACACGATACATGAAAA ATATTGCAGGACCGAACCTTTACTATTGGTAAAACTGCTCTAACCACCAA ATTTTACTATACTTGGTGTAAGCAAGAACAATGAAACTTTTTTACTACAC GTTTTTTAGCCTTTTAAGCCTTTTGAGCCTTAAATGTTAAACTTTGTCAA GCTTAAAGGGGAACTAAACATTTTTTTGAAAATACCTAAATCACATCAAA TACTTCCAAGGAATGACCCCTGAAAATATTTTTCTCTAAAAACTTCTCTA TCAAAAGATATAGCTCTTTATGTTTACAGAAAATCTAATCTTTTTAAAGC AATGCGTATTTTGTTAGGGGAATAGGTCGAGCCATCTGTTTGACGTAAAC ACGTTCAGAAAGTAATTGGAAAGCTCTTACTTTTAATTGATAGAGAACCT TTAACTTTTTTAGTGTAGCCATAACTTTTTATCCACAAATAGTTTAACCA AGAGATAGAATTCATTAAAAAGCCATTTTTGAGTGGAGTAAAACTATGTT TGAACTTTCGAAAACAAGTGAGTGAAAATGATTTTAGAGTCGATTGAAAA AATTGAACTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTGAGAGTGAAAATTATA TTTTTTCGAAGTTATACTGTGTTGTGTAGTTCTTGGAGACAAAAAAAGCA TGACCTCAAAAAATGTTTAGTTCCCCTTTAAAGGACGCCTGTCAATAATA CAATAGTCTAATAGACTAATCTACGGTACAATCCTATCTTCTATATTAAC TTTCTAACTTTCTCGAGTACTTCTAACTGTTTCGTAAGTATTTTTCTGAA ACTTTGCCTTGATTGGAAGGTTCTTAAAAAAAAGCGAATTAAAAAACGTT ATTTTCTCATTCTCAGCCTCAGCATGTTGCTTAGATGTTTCTTAGTTTTT AAGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTAAAAAAACG TGTACTACCACTAAGGTTCCAAATAAATTTCTCCCCCCGTTTATTAATTT TTGGAAGCCCCCGTTCTTATTAGAGCCCCCCCCCGTTTATTTATTTTCAA AAAAGGTGAATTTTTCGGGTTTTAGTTAATAATTATCTTATTTTGGGAGG CTTTTAGAGGTACGATTTCCAACCCCCTTTTCCCCTTTTATTCGGACACC CCTACTGTTCGGTGTTTTGAAAATCATCAAAGGATCAGTCTTTCAAAACA TTTGGTATTTCTTTGCAGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAAC ACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGAT GGATGTTTTCTTGAAGGTAAGAAAGATTAGAAATTAGTATAATCAGTATA CGAAAATTCTAGCCTCACTCATATAACCCATCTTTCAACATAGAAATAAT ATCAATATGAAGCATTGAGCACGAGATGATGCATGCTATGGGCTTCCATC TTAATTTTAGCTATTCTTATATGTTGATTTTTAACCAATAGGAATCATTG AACATGAGATGATGCATCTTAATTTTAGCTTAAATCCAATCAAATTCTTA TATGTTGATTTTTTAATCAATTAGGAATCATTGCACACGAGATGATGCAT GCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGT TCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATA TCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGAGTGAGTGAATC CAAATTGGTTCATTGCGTATTATCAGTTTCGTGATATGCTTATTGATAGT GCGAGATAATACGCTTGCATACATCATATCAGTAACCTCAATAAAGCCTG GTGCACATGGGAACAGAATTGGAATTAATTAAAATCAACATTTTCTTTCA AAGCGAAATGGTAGAGATTGCAGGTTTATTTTCAATTTGAACGCGTTGAT TAGCATAGGGCCAAAACAACATTGCATAAATAAATCGAATCTGCTATGCT AATTCTCCGCTATGGTTTATCCATAGTCATTATAAAAAACCCCGGTCTGG AAATGTATGATTTTAGCTTTTTGTTAAATTTTCTTTTTGTTACAAACAAT CACGTTACCAAAATCTCCTCTTGGGATTGGTCTTATTTGCTAATCACACG ATCAAAAAGTTTGCAAAATAAATCGATTTTGGTACGTAAGCTCCAGCCTT TAACAATAAAAAGAGACAAAAGCCTTCCAGACCAGTGTTTTTATAATGAC TATGGTTTATCAAACGACGTTGCTACCAAGGATTTATTATACACTGGATA TACAAGTAACAGATTTTTGCCGATTTCTCGTGTACTAGCTATGTCCGCAG TAATGATATTATTGTTCACTCTCCTTCCNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGAGCCGCCATGACAGTTGTCCTTTGCGGACAAAGCTAGAACAT CAATTGTTTTCTGAAACAATGAAAATACAATGATCGCTCTCCATCGTTTT ATGAGTTGTTTATCGTGTATAATAAATCTTTGTTGCTACTACATACCTGT ATTTTTCTATGAGAAATTATTTCTCTAATTTTATCATGGATGTTCTTAAC TTTAAAAAAGTTAAGTGAAAAATGGCTTTTTAGGGTATGATCTAACTCGG TCTTAATTTAACATTCAATATATACCTCAAGCATCAAAATTTGACACTTT GTGAAAATTTTAAACATTTCTTGAGGATAATTGACAATTGATAGCTGAAA TTTTCTAAAAATTGGCATTCTTAGGTTCAGTTGTCAATTGTTATGATGTT ATTCTTAGTGTATCCTTAATTTTTATGCCAATTTCATCATAAATATTCTA ACAAATTATATTCTTCCTCTGAAGTATAATTCTTCGCCATAAATTTAAAT TCATACTGTACTGAAAATATTTTATTGCTTCTTCGTAACTAAGTACTTTG TGACTTTGAAATTAAGGGCTCTGGACATCATACCCAATTTTTCGATTTTA CACCAACTTAAATGGCAATTTCTGCATTTTCTAAAGATTAATGTATAACT TCCTGTTAAATGTCCTGTTAAACCTACCTTTTAAGAATTTTAAAATCGAA AAATTGGGAGGAAAAAATTAAATGAAGAAGAAAACGAAGAGTTTTTTGAA GAAGAGTATTTCACCTTTAAAAGCCCTAATCTCGGTAAAAAATCAAACAT TTTGGAATTTTTTTTGGTTCAGGCGATGTATCTATTTAGTATCTAAAAAT ACATTTTCGGAAAATTTTTGTGGAAGTATCTATCCTTTAAAATCTCCAAA AAACCTCATTTTTGGCAATTTTCTCCACTAAATTTCCATAGAAAAACAGC TATAACTTGGGATGTAGCCAAATAGAAAATTTTTCCGAAAAAATCTTAAT AAAGAAATTATTTGTCATTAACTTAAAAAAAGTTTGAAGCAATAAAATGA GTTCCCAAAAGAGATTAGGCTTTTTTTGTGAAAAGTATATGAATAGCGTC GTATTGACGTCCCGGGGGGGGTACTACCCTTGTCGACCGACGGGGGTGCT CCGCTGAGGTTCGAAAAATGGACCCTACGTGGGACTCGAAATTTGCGAAA AAAGTGACCCTGAATGGGACTGAAATTCCAAAATTTTCTCAAATTTTCCA TTTTTTCCCTAAATTTTCCAAAAAAAGGCACCCTACGAGGGACTGATTTT TCCATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTTAGAAA AGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATCTTGCCCTAGTACC CCCCCCCGGGATTGACGTTTTATAAAGGTCCATGCCACACTTATTCCTTA ATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTTTGTT CTTAAACAAGTCAAAGAAGCGAAAACATAAGCTTTTATCCTCAAATTCTG AAATTGGATTTTCACTATGACCAGAGCCCTTAAAACGTACCCTGAGTATC AGAGGTTGAGTTTTCAAAGAATATAATCAACCTCTGAGGACCAATAATAG AAATTTTATCGCGCATGTGTCAATCTAATCACTGTAGAAAGAATCAAAGA TGAAGAGCAAATATTACCATATTAATGTCTAGCAAACTGTATCAGTTTGC AGTTTACTATTTACAAATTCCCCAGAAACCTCCAAATGTAATTGAAATGA GTTTCTTTCGAAAGAAATCTTTTACATGATTCCCAAATGTATAACAGTAA TTACTAAACTATTATTGATAATGTTACTTTAAAGGAATGGAAATAATAGG CAGATGTTTATGGTCGTGTTCAGACCAAGGTTTAAAGCAATTAGGTCTAC ATGTTTCTTTCATATTCCTTTTGTATTTAACGGCACGCTTCTCATTAGTT AAACCAAAGTTTAAAAAGGAATCACCCTCTGGTTTAAAAAAAAAGTTTTT ACGATTTCGTTGCAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGCAGAGGGATTCCC TGAAATCTTTTTTGTTTCAAAGTATCTCAAGAGAGAAGATGACATGATTT CAAGTTAGGAAAGGAGATTCCTCGAGATCGCCAATCGGATGATGACAAAA GAAAAGTGATTATAATTGAATTCCCATATCAACAAAGTACTACTTAAACC TTGAACTTAAACTTTCAGGTCTGAACACGACCTATGTTAAGATTCTCTAT CACTGACTCTTTTTGAAAAGCATTGATGACATTTTCAAGTTGTGTTTTCA ACGACGGGAATAAAAATATCAACTTTGAATCCAAGATCTTGGATGGTCGT CATGGTTACTTTTTTCTGCGTTGATTGCACGCTGAATAGAATCTCGATTG GTCGGCACAGGTCAATATATGATTTTAGCCTGTGCTTTTCACGGTACTTA TAACGGCAAGAAATTAAGATAATTTATTTGTTGTTTTTTTGCTGCGACAA CACGATTAGTTGAGATTAATGTTGAGAAGTTATCCCGCTCACGGTTTCTA CACGCCTTGTCATATCCATATATTAAAGTAAAGTTGATTCTCGCTAATTT CAAACTCCAATGAGAAGTCGAATTTGTTCGAATTACAGAGAGGTTCGAAC TATAGAAGGTATTTCAAACTGTTTTTTCCATGGCGAGGACTAAGAGCAAG ATTGGCTTATAGAAAGATTCGAATAAAAAAATTTGAATTAGAGAGGATCC ACTATATAACCGATTTTTGGCTCTTTTTTCCTAGCCTTATGATTATGGAA GTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTC ATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAA TGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTT AAGGTGAGACCACGTATGATATTTTCTTTGTTTTTCTGCAATTTGATTGG CAGATATGTGAAGGTGAGTATACCACGTGATATTTTTCTTTGTTTTTCTG CAATTTGATTGGCAGATATGTGAAGGTGAGTATACCACGTTAAATTTTTC CCGTTTTGATTGATGGATAGGCTATTTATGTTATTTTGAAATCACTCTTA TTCGATATTAAAGGGACTAACACTTTTCTTCGAATTAGAGAGATATTCGA ATTATAGTGAATTTTACATTAATTTCCAGCATAAGGAACCCAAGTTTTAG TTCGAATGACAGAAGGACTCGAATTTTAAAAATTCCGATTAAAAAATTGT ATCACCACACAACTCAAAAATACCTGTCAATTATTGCCAACAACCTTTAG TAGAAATACCTTTCAATGAAACCAGTCTGTATCGATATTCAGTAGACAAT CCGTGCTTAGACAGGTTTCCTGGACAAGGTGGATAATTCATAATAAGTGG CAACACAGAGGCTGTTCATTTAACGTTCCCAGACCATCTAAAAAGAACGA CAAATAAATATTAAAAAGCGACAAAAAAAACGACAAATTTTTAAAGTACA ACAAATTTCATATTTCGCCGCCTACAATCCCGACCGAAAGTGACTCTACC ACCCCTATAGATTCATTCCTCTTTGTTTATCACGGAAATTAACTGCTTGT GGTTTAAAAGAACGGCAAGTTACACATGCGTACATCCGAGTCGCGTGAAA ACTATAGTAAAGCAAGCTACATGACTAATTCAGACATAGTGGAAATAAAG CAAAAAGTAATGGAGGGAACAAATTTTAGTCGTCTAAAAACCGGAAAATA ATATAGACTTTTACCAAAAACGAAAATTAAATCTAAGTTTCACCGAATAC AGTATTCTATATCATAATACGCTTCTAAAATTGTTTAAGGGATGGAACTG GAGCGGAAAAATTAATGCAATTTGAGGACATGCATTAAGTTACCCGAGTA TCAAGTTTTCAAAAGTTTGGCGCCAAGGCTTTGCAACGGACTCAATGGAA CAAGCAACCAAACATTACAACAAATATGGAAGTTTGTCTGGGTTCAAAAT GTCATTTGTAAAATACAATCATTATACCTACAAAGGATATTATCATTAGG CTTTTATTTTAAGTTTTCCTTGTTTTTTCTTTTTTTTTTTTGGCGTTTTG AG

Coding sequence (CDS) from alignment at scaffold_94:364450..376201-

>TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=CDS|length=4734bp|location=Sequence derived from alignment at scaffold_94:364450..376201- (Clytia hemisphaerica)
CCTTATGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTC
CAACGGTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTC
AAGTCGGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGA
CGATTGTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCATGCCATG
GGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAAT
CAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCA
CTAACACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAA
AGTTGGAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGA
GTATTGATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAA
ATTAAAAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAA
CAACGCATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAG
AATTCGGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCA
GATGATCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATG
TTGACCGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCA
TACAAGTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTC
ATAAGGGAACAAGCGAAATAAACACTAATAGGAAATATGCCTTATGATTA
TGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAAC
AAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAA
AGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAA
GTGTTAAGAATCATTGCACACGAGATGATGCATGCCATGGGTTTCCATCA
TGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAAGAGAAA
ACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCACTAACACTGTC
CCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAAC
ACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGAT
GGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAAATTAAAAACGT
CATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACGCATGGG
TACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTCGGAAAA
CGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCAGATGATCAAAG
AAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGACCGTTAC
TATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAAGTTCAA
TAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACA
AGCGAAATAAACACTAATAGGAAATATGCCTTATGATTATGGAAGTGTGA
TGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATC
CCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCT
CTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGAAT
CATTGCACACGAGATGATGCATGCCATGGGTTTCCATCATGAACACTCAA
GGCCAGACCGTGACCAGTTTGTTCAAATCAGAAGAGAAAACATTCTCGGT
GGATGCGAAAATAATTTTGATATCGCCACTAACACTGTCCCTGATTACGC
TATCTCGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAACACTATCTCGAA
AGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGATGGATGTTTTCT
TGAAGTCACAATCGCTGAACAACAACAAATTAAAAACGTCATTAAGAAAG
TCAACGGATACTTGAGTGGTTGTCATAACAACGCATGGGTACCCGCTGCA
GCACGCCATTATGGGAAGACTGTTTTAGAATTCGGAAAACGAGTAGGGAC
TTATCACTGACGAGAAATACCCACCGCAGATGATCAAAGAAATGAAAAGG
AAAAACAACAAGCGTGTTTTTCAAAATGTTGACCGTTACTATTGGAAACC
AAATAGAAATGGTGTCCTTGAAATACCATACAAGTTCAATAAAGACTAAA
AACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAAATAAA
CACTAATAGGAAATATGCCTTATGATTATGGAAGTGTGATGCATTATGGT
CTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATCCCTAAGAAAAC
AATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCTCTCCAATGGTG
ACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGAATCATTGCACACG
AGATGATGCATGCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGT
GACCAGTTTGTTCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAA
TAATTTTGATATCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGT
TGGAGTTACGTTGGTAAAGTTGGAGAACACTATCTCGAAAGTTTCCCGAA
TGCTATTCAACCTTTGAGTATTGATGATGGATGTTTTCTTGAAGTCACAA
TCGCTGAACAACAACAAATTAAAAACGTCATTAAGAAAGTCAACGGATAC
TTGAGTGGTTGTCATAACAACGCATGGGTACCCGCTGCAGCACGCCATTA
TGGGAAGACTGTTTTAGAATTCGGAAAACGAGTAGGGACTTATCACTGAC
GAGAAATACCCACCGCAGATGATCAAAGAAATGAAAAGGAAAAACAACAA
GCGTGTTTTTCAAAATGTTGACCGTTACTATTGGAAACCAAATAGAAATG
GTGTCCTTGAAATACCATACAAGTTCAATAAAGACTAAAAACGGTGGTAA
AAATCCGAGAATTGGTCATAAGGGAACAAGCGAAATAAACACTAATAGGA
AATATGCCTTATGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTT
CACTTCCAACGGTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAG
GCGTTCAAGTCGGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAG
CTCAGACGATTGTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCAT
GCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGT
TCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATA
TCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGT
TGGTAAAGTTGGAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAAC
CTTTGAGTATTGATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAA
CAACAAATTAAAAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTG
TCATAACAACGCATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTG
TTTTAGAATTCGGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCC
ACCGCAGATGATCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTC
AAAATGTTGACCGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAA
ATACCATACAAGTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAA
TTGGTCATAAGGGAACAAGCGAAATAAACACTAATAGGAAATATGCCTTA
TGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACG
GTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTC
GGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATT
GTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCATGCCATGGGTTT
CCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAA
GAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCACTAAC
ACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAAAGTTG
GAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATT
GATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAAATTAA
AAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACG
CATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTC
GGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCAGATGA
TCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGAC
CGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAA
GTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAG
GGAACAAGCGAAATAAACACTAATAGGAAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045649XLOC_045649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073543-proteinTCONS_00073543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073543-exon-scaffold_94-1575043694:376130..376201TCONS_00073543-exon-scaffold_94-1575043694:376130..376201Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:375739..375888TCONS_00073543-exon-scaffold_94-1575043694:375739..375888Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:375039..375180TCONS_00073543-exon-scaffold_94-1575043694:375039..375180Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:372286..372383TCONS_00073543-exon-scaffold_94-1575043694:372286..372383Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:371867..372027TCONS_00073543-exon-scaffold_94-1575043694:371867..372027Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:365649..365817TCONS_00073543-exon-scaffold_94-1575043694:365649..365817Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1575043694:364450..364712TCONS_00073543-exon-scaffold_94-1575043694:364450..364712Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:376130..376201TCONS_00073543-exon-scaffold_94-1510915933:376130..376201Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:375739..375888TCONS_00073543-exon-scaffold_94-1510915933:375739..375888Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:375039..375180TCONS_00073543-exon-scaffold_94-1510915933:375039..375180Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:372286..372383TCONS_00073543-exon-scaffold_94-1510915933:372286..372383Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:371867..372027TCONS_00073543-exon-scaffold_94-1510915933:371867..372027Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:365649..365817TCONS_00073543-exon-scaffold_94-1510915933:365649..365817Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1510915933:364450..364712TCONS_00073543-exon-scaffold_94-1510915933:364450..364712Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:376130..376201TCONS_00073543-exon-scaffold_94-1491911889:376130..376201Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:375739..375888TCONS_00073543-exon-scaffold_94-1491911889:375739..375888Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:375039..375180TCONS_00073543-exon-scaffold_94-1491911889:375039..375180Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:372286..372383TCONS_00073543-exon-scaffold_94-1491911889:372286..372383Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:371867..372027TCONS_00073543-exon-scaffold_94-1491911889:371867..372027Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:365649..365817TCONS_00073543-exon-scaffold_94-1491911889:365649..365817Clytia hemisphaericaexon
TCONS_00073543-exon-scaffold_94-1491911889:364450..364712TCONS_00073543-exon-scaffold_94-1491911889:364450..364712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:364450..376201 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.03796 7.63584 7.28702 8.1676 3.99738 3.01336 9.48696 8.97515 5.30113 11.482 5.24086 2.60531 0.707263 0.588569 0 0 17.5407 25.6518 0.772066 1.10497 30.1469 30.0244 15.6912 17.1918 29.3257 24.7702 5.68783 4.6692 0.650205 0.614483
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
BLAST of TCONS_00073543 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 3.305e-24
Identity = 69/243 (28.40%), Postives = 112/243 (46.09%), Query Frame = 3
Query:   72 GLITDEKYPPQMIKE--MKRKNNKRVFQNVDRYYWKPNRNGVLEIPYKFNKDFTIAEQQQIKNVIKKVNGYLSGCHNNAWVPAAARHYGKTVLEFGKRVGCWSYVGKVGEHYLESFPNAIQPLSIDDGCFLEG--IIAHEMMHAMGFHHEHSRPDRDQFVQIRRENILGGCENNFDIATNTVPDYAISPYDYGSVMHYGLFDFTSNGKQVIIPKKTIPPGVQVGQRNGLSNGDIAELRRLFKC 788
            GLI +E      + E  + R +  R+        W    +GV+E+P+  +  +    +Q I   + +          +  +        +  +      GC+S VG+ G          +Q +S+   C  +G  I+ HE+MH +GF HEH+R DRD+++++    IL G E NF  + ++     ++PYDY SVMHYG   F+  G   I P     P V +GQR  LS  DI  + +L+ C
Sbjct:   61 GLILEETPESSFLIEGDIIRPSPFRLLSATSNK-WPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEF-------ERSTCIRFVTYQDQRDFISIIPMYGCFSSVGRSG---------GMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSS---NMLTPYDYSSVMHYGRLAFSRRGLPTITPLWA--PSVHIGQRWNLSASDITRVLKLYGC 281          
The following BLAST results are available for this feature:
BLAST of TCONS_00073543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL3.305e-2428.40Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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