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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073540 ID=TCONS_00073540|Name=TCONS_00073540|organism=Clytia hemisphaerica|type=transcript|length=532bp
TGTGTTGTGcttcaagaaaataaaaatctctaaaaCTTCAACATAACAAG
TGTTACAATAAACGAAGATTCACTTCAACATATTCAACCATACAACAACA
GCTTTTTTTAAAGCTACATTCAACTTCAAAAATGTCTTGTCATTGTGCTG
TTCCAGAATGTCATAATGGAGATTACAAATTGCTCCAACGGAGAGCAAAG
AAATGTGATATCCATGCTCCTCTTAGACAAGATTGCCCATGCAAAGAACC
TTTCAAATTGCCAACTTTCCCTGGCAAGAAAAAGGACCCAGAACGTCGAA
AGCATTGGAGAATTCTTATTAACCGCACAGATCCCAAAACGAACAAGCTA
TGGAGCCCAGGATCAAAATCACGAGTGTGTTCTCGACATTTCACCGAATC
ACTACCACACTACCCATCAAGATTGTTATGGTATAATGGAGTCGAGGAGA
AACTTTACCGAATGTTTCCCGAAAAATTTGCGAAAAGGAGGAAGTTCGAA
TATAAACCTTTGGAATCTTTGGAGCCTTTGGA Run BLAST on NCBI protein sequence of TCONS_00073540-protein >TCONS_00073540-protein ID=TCONS_00073540-protein|Name=TCONS_00073540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSCHCAVPECHNGDYKLLQRRAKKCDIHAPLRQDCPCKEPFKLPTFPGKK
KDPERRKHWRILINRTDPKTNKLWSPGSKSRVCSRHFTESLPHYPSRLLW
YNGVEEKLYRMFPEKFAKRRKFEYKPLESLEPL Run BLAST on NCBI transcript from alignment at scaffold_94:176906..177700- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073540 ID=TCONS_00073540|Name=TCONS_00073540|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_94:176906..177700- (Clytia hemisphaerica)
TGTGTTGTGCTTCAAGAAAATAAAAATCTCTAAAACTTCAACATAACAAG
TGTTACAATAAACGAAGATTCACTTCAACATATTCAACCATACAACAACA
GCTTTTTTTAAAGCTACATTCAACTTCAAAAATGTCTTGTCATTGTGCTG
TTCCAGAATGTCATAATGGAGATTACAAATTGCTCCAACGGAGAGCAAAG
AAATGTGATATCCATGCTCCTCTTAGACAAGATTGCCCATGCAAAGAACC
TTTCAAGTAAGCAAGTTATGCTCTCTTTTTAGCAGTTTTCAGCCAGCTAT
TTAACTGAAAAAATAAAGAAGGACAGTTTTAGATTTTTTCTAGCCCTGTC
TGTTGTTGATGTAGTTACATTATATCTCTATAATTCAAAATCCTTTCTGA
TTTTCTCTATTTAAGGTAAGTATCAGCAGAAATGAAAGTAATTGCTGTCT
CCCCAATCCTATCTCTGGACATTCAGGAATATTATGTCACAACTGAACTG
TATCTCTTATATTTTACAGATTGCCAACTTTCCCTGGCAAGAAAAAGGAC
CCAGAACGTCGAAAGCATTGGAGAATTCTTATTAACCGCACAGATCCCAA
AACGAACAAGCTATGGAGCCCAGGATCAAAATCACGAGTGTGTTCTCGAC
ATTTCACCGAATCACTACCACACTACCCATCAAGATTGTTATGGTATAAT
GGAGTCGAGGAGAAACTTTACCGAATGTTTCCCGAAAAATTTGCGAAAAG
GAGGAAGTTCGAATATAAACCTTTGGAATCTTTGGAGCCTTTGGA Coding sequence (CDS) from alignment at scaffold_94:176906..177700- >TCONS_00073540 ID=TCONS_00073540|Name=TCONS_00073540|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_94:176906..177700- (Clytia hemisphaerica)
ATTGCCAACTTTCCCTGGCAAGAAAAAGGACCCAGAACGTCGAAAGCATT
GGAGAATTCTTATTAACCGCACAGATCCCAAAACGAACAAGCTATGGAGC
CCAGGATCAAAATCACGAGTGTGTTCTCGACATTTCACCGAATCACTACC
ACACTACCCATCAAGATTGTTATGGTATAATGGAGTCGAGGAGAAACTTT
ACCGAATGTTTCCCGAAAAATTTGCGAAAAGGAGGAAGTTCGAATATAAA
CCTTTGGAATCTTTGGAGCCTTTGATGTCTTGTCATTGTGCTGTTCCAGA
ATGTCATAATGGAGATTACAAATTGCTCCAACGGAGAGCAAAGAAATGTG
ATATCCATGCTCCTCTTAGACAAGATTGCCCATGCAAAGAACCTTTCAAA
TTGCCAACTTTCCCTGGCAAGAAAAAGGACCCAGAACGTCGAAAGCATTG
GAGAATTCTTATTAACCGCACAGATCCCAAAACGAACAAGCTATGGAGCC
CAGGATCAAAATCACGAGTGTGTTCTCGACATTTCACCGAATCACTACCA
CACTACCCATCAAGATTGTTATGGTATAATGGAGTCGAGGAGAAACTTTA
CCGAATGTTTCCCGAAAAATTTGCGAAAAGGAGGAAGTTCGAATATAAAC
CTTTGGAATCTTTGGAGCCTTTGATGTCTTGTCATTGTGCTGTTCCAGAA
TGTCATAATGGAGATTACAAATTGCTCCAACGGAGAGCAAAGAAATGTGA
TATCCATGCTCCTCTTAGACAAGATTGCCCATGCAAAGAACCTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073540-exon-scaffold_94-1575043694:177445..177700 | TCONS_00073540-exon-scaffold_94-1575043694:177445..177700 | Clytia hemisphaerica | exon |
| TCONS_00073540-exon-scaffold_94-1575043694:176906..177181 | TCONS_00073540-exon-scaffold_94-1575043694:176906..177181 | Clytia hemisphaerica | exon |
| TCONS_00073540-exon-scaffold_94-1510915933:177445..177700 | TCONS_00073540-exon-scaffold_94-1510915933:177445..177700 | Clytia hemisphaerica | exon |
| TCONS_00073540-exon-scaffold_94-1510915933:176906..177181 | TCONS_00073540-exon-scaffold_94-1510915933:176906..177181 | Clytia hemisphaerica | exon |
| TCONS_00073540-exon-scaffold_94-1491911889:177445..177700 | TCONS_00073540-exon-scaffold_94-1491911889:177445..177700 | Clytia hemisphaerica | exon |
| TCONS_00073540-exon-scaffold_94-1491911889:176906..177181 | TCONS_00073540-exon-scaffold_94-1491911889:176906..177181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:176906..177700 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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