TCONS_00073535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073535
Unique NameTCONS_00073535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073535 ID=TCONS_00073535|Name=TCONS_00073535|organism=Clytia hemisphaerica|type=transcript|length=1150bp
TTCGACTCTTCGTTATGTATACGCTATCATAAAggaaaatcctcaaaact
cgtCATCTTGACTGGGAACGCTCGTAATGCTCTATTGTTCCCATACCTCA
TCAAGAAAAAGATCAAGCGATGTGGAACGGTCACACAGTCGAAAAATTAC
AACCAAGGCGTTGCTAAGAATCGTAAAAGAAGATTTATCCCGCAAGGAAC
TGCTTGGAATAAAAAGttATTAGCCTGGAGAATCGACGAAAATACAAATG
ACCTACCCAACTTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATT
TGGTCGAAATGGATTCCGATAACTttccaagaaaaaaataaaggcaAAGT
CGATATTTCGATCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAG
CTTTCACTGGACAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAA
GGACAAgACATTGCCGGAGACATTCACTTCAACGATGACCAAAGGTTCAC
CCACAATGCTGAACCTTCAAACAGAGGGGGTATGGGAACTAATCTAGCAT
GGTCTGCCCTCCATGAGATAGGACACTCTTTAGGGCTTGAACATTCGAAC
ATATACGGCGCAGTAATGTCACCCTTTTACACCTCATTCTATCATCCTGG
AGTTGATCTAGCCTTGACTAATGACGATATCAAAGGTGTCCAGGCCATTT
ATGGTAAATCAACACACAGCAAAACAAATCGAGTCGATTCTTTTCTTGTA
AAATGAGTAGTTGGTGTGAAAAAATGAATGGAGGAGAAAAAGGAAGCTGA
TTTCTTAGCTGATTTTAATGCTATGCGCGTTTACCAGTGTGATGCATGCA
CAACAAGATAGTTTAACAACGAGAAGAAGATAATCATGATGTGGTTCCTA
GAACGAGTGAAAGAGAAAAGAAATGGATAGTTCcgagctggcacacaacg
ttgtttcaacgtttatctaacgttcacaacgtccatataacgttaaatga
acgttgaaacaacgttgtgtgccagctgggtcttTAACGTAGTAGAATAT
AGAACATAGAACGTTGCTATGTCAATCTATGAACCCGACATCCAATTCCG
TGAAATACATAAAAAGGTGACAAACAAACAATACACCTTATCAACCGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_94:405246..416521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073535 ID=TCONS_00073535|Name=TCONS_00073535|organism=Clytia hemisphaerica|type=transcript|length=11276bp|location=Sequence derived from alignment at scaffold_94:405246..416521+ (Clytia hemisphaerica)
TTCGACTCTTCGTTATGTATACGCTATCATAAAggaaaatcctcaaaact cgtCATCTTGACTGGGGTAAGAATGATTGAAATAATGTTAAAACGCTCTG AGAGTCTCATcaagatttatcaaaatttcgcattttaaaagttaaaagtt aCTGTAGTCAAAAATATCACGCCCGTTAAATCTGCAGTTTTAAAAGAACT AAacattaagggctctgaccatagtgaatttttcataattgccgtgttta aaatgtgttttctgactgatgtaaccaacaaaactatggcatgttataca ttttctgttagacaaactattcctgaatctgaaaattcaaaaattgcatt gaaaaaatttgatgaagaagaaaatgaagacttttgcgatgaagagtatt tcaactttgaagagcttagtttcggcgaagaaactcgtccgaaaggacga ggaaaattcgaaacaaaaaaatcgcgagtgcaattttcgaattgtacgag ttattatgtgattacgagctaatcgcacaatgggtttcactactttttcc cagttatgaaagtaaattacactgaaagttttatatttttctcttctctc tatGCCGTctctatgtttttcttttattgttgtttatagattttctttct cacaaaatgaatttcgaatgcaattaaaacgttcgatgaaaaaaaaatgt gagaaaaaacattaaaatcaattttataaacattggcgctgcatcgaaga gtgtgattaacgatttattgctctctacaggatgcaattaacgattaatt gctctctttgagggcgcgacaaataagaaaaaataacccatcgtgcgatt aagttcttaattacttttaaggggtttgattaaaaagcaatttataaagg caattctttgttaaaagtgttaaagaatctaaaacataacttttatgttc agatactaaaatcaattttctgactatggtcagagcctttAAATTAATGT TCGCAAAGAAAATGAATCTTATCGTAATTTCGTAGTTTAGTTTCTTATAT CGCAAAAAAATCACCTGTGCTGATGTTTATGTATGTCAATTGACTCAGAA ATTCTCGGTTCCCCTGAGGTCTATTTAAGACAGCATTGCCAAAGCATGAA TCATATCCAGAGAGAATCGAAGTCAGGTTGTAAATAACAATTATCAACTA TGTATGAAACTTCTGATATTTGAAATATGCCTTgtattcaataaaataaa taccaaatttattttcaattatcGTGAGTGGTAATTAAAATTATTGTCTG CATTCAACAATAACACTTCACGGGGCTTATTTTTTGTTAATGCGTCACCG CATTACTCTCGTACAAAATGGaggaaaaaaattgttatttacACCACCGG CTGTGTTTTACTATAAGACAAATATCTTAAGGCCTGGCATTCCTTAATTT TTATAGGAAAATCAGGAAAATgttttacttacttacttgtttttaatttt ataagaacatagtACATAAgaacaaaatggtgaaaataagaacatacacg tttttttttatataaggaacacgtttataaggaactcgagcctgaaaatg gtccaaaaactaaggaattgttaaggaactgctcaggctgagaataagaa aacaagttttaaggaacagtaagagatggttatccaaacttagcagctat gtaaataAGGAACTCGATAAGGAACTTTGAtcctgaaattctctgtaaaa ataaggaactccaggctcagagcaaagttaaggttccttataaaaaaaaa cgtgtatgctaagaacatctttaggcttaaatctcaaaaagttaagaaca tcagaaTATATTAAGAATCATCAGCGTAAGATTTGGCAACTGAATCTAAG AATGCcaaattttcagatattttaAAGCATTTTGACCAATAATTGGCTAa tccgaggggtaaatcacttcgaaaaagcgtacgaaatgatttttgatttt tgttttttttgtgattttttgatttttttgtgatttctttttgatttttt gatttttttctgtgatttttttgtgatttctttttgattttttgattttt tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNtgatttttttgtgatttttttgt gattttttgatttttctgtgatttttttgtgattttttgatttttctgtg atttttttgtgattttttgattttttttttatttttttgtgattttttga tttttttgtgatttttttgtgatttctgattttttgcatgatttttttgt gatttttctaagaagtgtacgagattttttcgagtaatttacccctcgGG CTAATCTGCCACCTTCGCTCAAAACTTTTACGCAaagggcccccagcggt ttgagTGAATGCGTGAACAGTGcgtgaaaatatttaaaaagctgCGTAAA TGCGTGAATAGACCTtagagttttttgatttttctaaaaaagcgatgaat tgtgggattgtttcgagtgtgttacaatagaaatctcttaggaattcctc aatggaattctattgtaatacaatcgaaacaatcccacaatgcatcgttt ttttagaaaaatcaaaaactccgataaggtctattggaaaactttgcgtg aacagagtttgcgtgaatttcgtgAATTTGGAGATAACAATCTGCTCGGG AATGCCCGTCTTATTTCTTATGAGATGGACAAAATAATAAATAGTGAAAA TtagaatattaagaacatttttaagcttaaactCAAAGAGCTagaaacat ccgaaggcttcgtaAAATTTGGACGTTCTTAAAAACAACCATATATGcct ttaaaaagttttatgaggaaattggccaaaaaataaaGCATATGCCAAAA TACCACCATCATTGAATTTTGCAATTTGTTCTGAAcctaaaaatgtaatt ttttagaTTGATTACTAATGATTACCTAGAAAAAACTTTTacagaaataa aaaacattttcttgaggtGTATTACATGCTAGATTTAAGCTGGGCTTTGA TTCTAGCCTAAGAATACCACAATAATATTTAAGGttgatttttctcaaaa gtttaGAATATTCGtgataaaatggaaaaaacaccattcttataaaaaaa agcgtgtaattaaGTTAGTCAGGTTTAATTTCTAAAAGATGAAGAATTGT CAGATCATTTGATAATCTATTTAAATTAAGTATCGGCACGCAATGTTTCC TCCCGCGgagaaaatacttaaataacCAACATACTTAGTCGAGACAAGCT TAGCGTAATCATTTTTTCTTATCAATAGCATACCGAGTTGGTTCAAAAAA TGTCAGTTCAACGCTCGTCTTGCAAACGTTGGCAATATACTTGCATCTTT AGAATTGCACTTGAAGTAAAGACAAAGATCAAACAAAGCCATTATTACAA ATATAAtccaaaaacattcaaaaatacaCTGACCACCTcactcgggtgaa acaaggcatgtcccaaatatattttgcgtgacgcacaccgcttcccatta ttcattaactttcatatatagctcaaaagaatcgtatCNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NAAATTTAcatcaagccaatctcaagatatcggccaaaaactgattttga cgttataaaatacatcgaaaaaacacgtcaaaaagacaatttaaatgacg tcattattaaaaaaaagctcaggatctgaggatccaaaagttcaaaaata gtccaataagactcagaatatagcctggaagtctgccaacccctcccaaa ttgaaatattcgataaaattaaaaagacagccaaaaatcgactttctcgc cagaactttaaatcttgaaaaacgttaaaataaccaaaattctcaatata ttatgaccttaattgtacaaaagatgtcacggaaccccaggcttggcccc tactataaagtgcactttgggaagcttgtaaaatatacccttaagggccc CACTTACGgtaatttatacaatttttCATCATTATCTTTGCAGAACGCTC GTAATGCTCTATTGTTCCCATACCTCATCAAGAAAAAGATCAAGCGATGT GGAACGGTCACACAGTCGAAAAATTACAACCAAGGCGTTGCTAAGAATCG TAAAAGAAGATTTATCCCGCAAGGAACTGCTTGGAATAAAAAGGTTAGCC AGTTAGACCTAAATTAAGGTAAAGTTTGATTAACCTTAATCTTTTTACTA TCTATTAATGAAAGCATGTCTGTGATTCAAACCAAAAGTTCGCTCAACTG GAAAGTCTcgaaatattttcattaatCGGAATACTTCTATATTTATATTT AATTCGAAAACAAAATTCTTTGTTTCTCGAAGATCCAATTAGAGAGAGTT AGCAATTTTATCAAAGACCCGGTTAaaacaatgggcttttccagaaaaaa accgtatacctcctgttgaggagtccatttccgttccaacggaGTAAGGT TTGATGTGTGGCGGAATTACATaaggagatacaaaaatctgtcaaaataa TAAGTGGAATTTTATGGTGGTAGCCTTTTAAAttctactaaaattcagaa tttcaAAGGGGTGTAAACCTGAAACTGTCTGGAATTCCAGGGgattacag catttccagccacagagggatgAACCTCCTCAAATTTATTGTGAAATAGC TGGAAAAAGTTCACAAACAAGCCTTATGTTATGTCTCTCTTAGTAAATAA TTAATTGAACCATGTATCAAGCCACGCAAAAAAATAACCCTGGAATGCCT CCAATTTTCGTCCCTGGAATCACCCCATACTCATTTTAGTAATcaaccaa cttttttttagttATTAGCCTGGAGAATCGACGAAAATACAAATGACCTA CCCAACTTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATTTGGTC GAAATGGATTCCGATAACTttccaagaaaaaaataaaggcaAAGTCGATA TTTCGATCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAGCTTTC ACTGGACAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAAGGACA AggttggtatttttttctttgataagTATAGAAGAATTGTGGATGACGTT GGGAATTTATGATAGATTTTCAAATGTTATAATCGGTTAAAATCCAGTCC CTCAAAATCCAAATTAAATCccaattttcctgtttttctcAAAGGACTTG ATCATTGTTTCTTTTTGCGTTCTCACagaaagcaaaaaaagaaaaagaaa taggaACCGAACCGGGCCACTTAACAGGTCCACCCaatctatcaaaaagc tatgaTTAGTCTCCGGGCTAGGTTGGATTTgtttagcaaaaaaattaaaa ccataTTAcacctagtctgaatcgcagacctctatagatatgaTTGCCCT CTCTCTCCACCTCCCTAGGCTGGATTTGTCTTGTTTTTAGTTTCATCAAT TTGTTTGTATTTCTGTTTTCCAGACATTGCCGGAGACATTCACTTCAACG ATGACCAAAGGTTCACCCACAATGCTGAACCTTCAAACAGAGGGGGTATG GGAACTAATCTAGCATGGTCTGCCCTCCATGAGATAGGACACTCTTTAGG TGAGATTTGGTTGGTTGTTATAATGCGTCTAATACAGTCATATGTGTCTT GTGTTATAGGATAATACAACAATTGTTAcaggataatatcagtttgtctt ttccaatattttttcatctttttctaCTCTGGCTGAACTGGTCATTTACA ATCCcacacaaaatatttgagacaaaaaggatttgcttttgaaattttaa acaccacaaataaTTTTTAAGCGAGTTAAactagagttttaacatgacaC TTAAaacttacgaccttaggatctcaggagttaaaagctcaaaattgttt CGGGcaagattgggcttttccagaaaaagattttacacccgctgttgagg atatcaacttttaaaaatatactaaaccccctggatatcctctcttataa agatgcttacccattggatatcgtattttttacttgaaaagacactttac ccctggatatccgctcccttgcaGATAttaaaccccctggatatccactt ttgagcaaaaatcgttaaccccctggatatcctctcttataaagatgctt acccattggatatcgtattttttacttgaaaagacactttacccctggat atccgctcccttgcaGATAttaaaccccctggatatccacttttgagcaa aaatcgTTAATCCCCTGggtatccgatatcctcaacaggagGTGCACgga ctatttttggaaaagcccattgtagCCTGACAATTCTGTCTTTGTCAATT TCTCGGTGAGGCGTTGATCAGCCTGGATAAGAGTTCAAGGCTTTTTATCG CCTGTTCCAAATCTTCTGTTCGTGActagatttttgtttttgttggaaag CTTTTAAGAAGAATTATCGAATTAAGGGTTGGTACTCCAGCATATACATA TATATCTTTCACAATGGTGTATTGTTCTGTGATTATAAAGACCTAAAGTG CAGTTTTTTTATTAGTAAATcgtaatcgttttttttttacccaCGCTATT TTTCCTcccttttgttgtttttcttttttgaaaaacatatttaCTTAAAT TTAGACTGCTCGAATTAATGGCCTGTGACATATTTCAGATTTATGCAACA TAACATGTTATGGTTCCCTAACCATACCATAACTTAGGGTCATCTGCTTT AactctttttttgtttctactAGATGTGTGGAAACCATGATTGAAAGAAT TACTTTTAAATACAATAACATTGTTTCCACATTATAGAAAAGGAGAGCGC ACATttaagcaattccattggttaATTATGGGTCTACTACGATTTTACCT AAAAAgtgatttcaaaaattatttNTttaagcaattccattggttaGTTA TGGGTCTACTACGATTTTACCTAAAAAgtgatttcaaaaattatttaaca AATTTAAAGACCTCTAGAAATTATTTTAACCTCGAATCAACTTTTGTTTT CTATATCTTAGGGCTTGAACATTCGAACATATACGGCGCAGTAATGTCAC CCTTTTACACCTCATTCTATCATCCTGGAGTTGATCTAGCCTTGACTAAT GACGATATCAAAGGTGTCCAGGCCATTTATGGTATGATTCTTTCTCTCAT CATGTTCGAAATGAGTCACGTGGGTTTTCTGGACCAATAGGCTTCTTCCT AATAGTAGTATTATTATAAATCTAAGATTTATCAAAATGGTTTGTTAAAG AGCGCTCTCTTTCCAGATTGCTTATGATTCTGAGCCGTGCCTGATTTTTC ATGTTCGAGTTTTCTCGTTCACAAATGAAGGTCAAGGACACAACCGATCT CGCAACCGATCAGACGAACCCAAAGGCTAAGAGGCTAAAGTAAGGCTAGG GCTGAATCTCCTATgtgtaggatttgaagccaaatATTTACTACCTAGTG GCATGAGccacttttttttactataaaccctcaaaatacttacaaaattc gaaaatgttaaccggaaaaaaaaaagtGCTAGATTTAATTCGTCAGAAAG GAAGAGCAAATTTTAAGATGTTAGTTTCGCTTACGTCTCTAGCCATCAAA TATAACTCATTGAAAAAGCTTCTTACAGAAATTGCATAATACAATGagaa aatgacattttgaaGCAGAATTAAACTTCAGGTTGTGCTTTCAAATTTgc tcaatacacctttttgaccgtagtcgcgcggtcaggtaCGTGCCACTTTA TCATTTAATTACACCCCTGAAACTCAATCCAATCcttatttatacttttt tctaaTGTCTTTAGGTGCacaaaaaagactgggacggttttagggcggta aaacagacaaaaaatgtcCGCGCGGCATTTGGCggttacggtcgaaaagg tgtattttactttttctacACAGGCAATTTACCTTTTTATCCTGTGagat taatattttcaaaacttacGCACGTGAAAGCACTTTCTAAGTAAGATTTA CATGAAATTGAATTGTGTGAATTCTTAAATTCCATAGAGACCTTTCACAA GCATGCCCTGCAATGCTCAAAATTTAAGCGCTCCCCTCATCCCATTTTCC CAAATTAGCATATTTGATAGGATTTTTGTGCATCTGTTACGTGCTAATTT CTATTAAATTTAAAGGAGTAAAATGCACAGATTTGTGCAGATTTCGCCTC AAAAAAGACGGtgaaaaagattatttttttgtcaTCATTAAATTGACTtg ggaattcaaaaaaaattcacaacaGAGTACTTGACCAGAAAAAGttgatt acacgcttttttataagaatggtgttttttcatttcatcatcaTGGATAG TCtgaactttttggggaaaatcattatcaaaatttttatacGGTATATTG TTAGGTTATATTCCAACCACCCAGCCTAATCTagcatgtaatacatacct cAAGCAAATATTTGGCAAGAACTTTTAGCCTTGCTGGGGAATAATTGgaa ttttacaaataaaatgctcAAAAGATCctgtgccgtaggaagcattttct tattgggggggctgaagtttagtgacaccgcgagggccaaccatggtttg acCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGt ttggcccggggggggggattttgaaaatctaggctctagattgcttgaaa atgcactcaaaacaaaatgctttcaagaaaaaaccagaaaaactttgcat tttgcaaaataaccatttttgaaaagattattGGGGACATAGCCTCCCCC ctcccagttgctacggcactgagatcggtattcttaggttcagaTGCGAA ATCCCATGATGGTGTCATTCCAGAGAAATTGAAAGGGATAGAAAAAGCGC TTCTCTGATTATCCAATAAAGTGTTCTGATCGTTTCTATTGAAAACTCGA TTGTTTCAGCTTTAATTAGGTAgttagaaaaagttaagaaaaaacgGCTG ATATCATGCCCCTGATATAAGGTTCTCGCATAATTTGACCtgaaacaaaa aactttcgtcACACTACGCTGattatacacattttttaaagcGAAAACTT GAAATCCAAGAAGTCCACTAACTGAAAACAAACTTATCCCTTGAGGGCAA AGGGCCTGGTACATGATGAGCCATATagttccattgttttcaagaagctg ttctACTATCTCTTTCCATTTTTCTGGTTATTCTtagcattttttttgct ttagaataatttttttggcaaatttcatcatgaatattcttataaagtat atcatttttttaacaaaagttTGTACTACAGTGACGTAGAAAAATGTCGA AAACACGAATCCTAATAATGCTCTACAGACACTTTTGTTTATAAGttgaa ttgtttttattgatattgCAAAGCTATTTCTTTTCTTGTAACCTCTTTGC GCAATTCGGTGTTAAAAAtcacttcttctttttctaaatCCTGTGGTCAC TTCACAATAAAAATCTCCTTTCCATAAAGAAAAccacaaaaagtcaaaaa caggAACTTCACAACataaacatgtttttattttttccttttccgACCTT TCCGTCAATTTAGAAAGTAAATTGTTGCAAAACATTTGAACAGCTCATTG TGACCCGATGAAAGCTAGAACCCAACTGAATAATTCGGCCAAAATACTTC CTtggtgaaaaatattcttaatttcaaccctttttgaaaaagtgcGCTAT GGTTTTAATCCAATTTGAAATGGAatttaaaaattgtattttaaaacCAT CTCTTCTTCTGAAGTTTTTGAGCTAGACACAATAGATTTTCATCCTCATT GAGTatgtagacgatcctatcgtctacacaggCTCACTAAAAAGGGGCAT AATTTAGGAGGCGAATAAACGATGGTTAGCCCTGGGCGgagagtaagcag tggcggaggaggtgtttacagtgtagtctgttccaaactctaccgctGCT TTCTTTTTCTAAACCACCCTGACGCCCTGATGTTTATTGACCCactaacg gacgatagcatcgtctacatCGAGTGAAAAAGTTCCACCATTAGCGTAGT GGGTTGACCGAAATCGAGGCAAACAGCGGAGGCAATCTTAAATTAGTAAT TTGGCACCctattaaaagtaaaatatcGTGGGAAGCTAGCacaaaagttt ttgactttttttatctttttgtctGAAATCTGCTAATTCTTAGATATAAA AAAGCAGAGAGTGGCCGGAATAAGTAGCCAGAGGTGCTTTTTTGCGCTCT TTGTCCTTCAGCGCCTCAAAATATCGGCCACTGGTCCCCTGCCCCAATGC TACTGAGTTCTACCTGGGTACTGAGAAAGTTGTTTATACAGCAGTTTTTT TTACCACATCTTCTATTGCACCATTTCAGGTAAATCAACACACAGCAAAA CAAATCGAGTCGATTCTTTTCTTGTAAAATGAGTAGTTGGTGTGAAAAAA TGAATGGAGGAGAAAAAGGAAGCTGATTTCTTAGCTGATTTTAATGCTAT GCGCGTTTACCAGTGTGATGCATGCACAACAAGATAGTTTAACAACGAGA AGAAGATAATCATGATGTGGTTCCTAGAACGAGTGAAAGAGAAAAGAAAT GGATAGTTCcgagctggcacacaacgttgtttcaacgtttatctaacgtt cacaacgtccatataacgttaaatgaacgttgaaacaacgttgtgtgcca gctgggtcttTAACGTAGTAGAATATAGAACATAGAACGTTGCTATGTCA ATCTATGAACCCGACATCCAATTCCGTGAAATACATAAAAAGGTGACAAA CAAACAATACACCTTATCAACCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045641XLOC_045641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073535-exon-scaffold_94-1491911889:405246..405311TCONS_00073535-exon-scaffold_94-1491911889:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:405246..405311TCONS_00073535-exon-scaffold_94-1510915933:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:405246..405311TCONS_00073535-exon-scaffold_94-1575043694:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:409539..409688TCONS_00073535-exon-scaffold_94-1491911889:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:409539..409688TCONS_00073535-exon-scaffold_94-1510915933:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:409539..409688TCONS_00073535-exon-scaffold_94-1575043694:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:410357..410597TCONS_00073535-exon-scaffold_94-1491911889:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:410357..410597TCONS_00073535-exon-scaffold_94-1510915933:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:410357..410597TCONS_00073535-exon-scaffold_94-1575043694:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:411019..411144TCONS_00073535-exon-scaffold_94-1491911889:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:411019..411144TCONS_00073535-exon-scaffold_94-1510915933:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:411019..411144TCONS_00073535-exon-scaffold_94-1575043694:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:412607..412726TCONS_00073535-exon-scaffold_94-1491911889:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:412607..412726TCONS_00073535-exon-scaffold_94-1510915933:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:412607..412726TCONS_00073535-exon-scaffold_94-1575043694:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:416075..416521TCONS_00073535-exon-scaffold_94-1491911889:416075..416521Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:416075..416521TCONS_00073535-exon-scaffold_94-1510915933:416075..416521Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:416075..416521TCONS_00073535-exon-scaffold_94-1575043694:416075..416521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:405246..416521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.551723 0.923439 0.282133 0.597767 0.218021 0 0.548155 0.0337525 1.58808 3.32525 2.24532 1.17676 1.05298 1.49709 1.21958 1.73341e-05 0.314549 1.81487 0 1.61642 0.328435 2.63549 2.28048 1.89191 1.23021 0 18.3657 19.2895 0.286576 0.804612
Blast
BLAST of TCONS_00073535 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.635e-31
Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  205 WNKKLLAWRIDENTNDLPNFLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTGQDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSALHEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS 711
            W +  L +RI+  T DLP       I KAF +WS   P+TF + ++G+ DI I FV+  HR     F G  G +AHA+ P  G  I GD HF++D+R+T+N           NL   A HE+GHSLGL HS   GA+M P YT       D+ L  DDI G+QAIYG+S
Sbjct:  109 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR-DNSPFDGPGGNLAHAFQP--GPGIGGDAHFDEDERWTNNFRE-------YNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF----SGDVQLAQDDIDGIQAIYGRS 263          
The following BLAST results are available for this feature:
BLAST of TCONS_00073535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP14.635e-3143.20Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
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