TCONS_00073535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073535
Unique NameTCONS_00073535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073535 ID=TCONS_00073535|Name=TCONS_00073535|organism=Clytia hemisphaerica|type=transcript|length=1150bp
TTCGACTCTTCGTTATGTATACGCTATCATAAAggaaaatcctcaaaact
cgtCATCTTGACTGGGAACGCTCGTAATGCTCTATTGTTCCCATACCTCA
TCAAGAAAAAGATCAAGCGATGTGGAACGGTCACACAGTCGAAAAATTAC
AACCAAGGCGTTGCTAAGAATCGTAAAAGAAGATTTATCCCGCAAGGAAC
TGCTTGGAATAAAAAGttATTAGCCTGGAGAATCGACGAAAATACAAATG
ACCTACCCAACTTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATT
TGGTCGAAATGGATTCCGATAACTttccaagaaaaaaataaaggcaAAGT
CGATATTTCGATCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAG
CTTTCACTGGACAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAA
GGACAAgACATTGCCGGAGACATTCACTTCAACGATGACCAAAGGTTCAC
CCACAATGCTGAACCTTCAAACAGAGGGGGTATGGGAACTAATCTAGCAT
GGTCTGCCCTCCATGAGATAGGACACTCTTTAGGGCTTGAACATTCGAAC
ATATACGGCGCAGTAATGTCACCCTTTTACACCTCATTCTATCATCCTGG
AGTTGATCTAGCCTTGACTAATGACGATATCAAAGGTGTCCAGGCCATTT
ATGGTAAATCAACACACAGCAAAACAAATCGAGTCGATTCTTTTCTTGTA
AAATGAGTAGTTGGTGTGAAAAAATGAATGGAGGAGAAAAAGGAAGCTGA
TTTCTTAGCTGATTTTAATGCTATGCGCGTTTACCAGTGTGATGCATGCA
CAACAAGATAGTTTAACAACGAGAAGAAGATAATCATGATGTGGTTCCTA
GAACGAGTGAAAGAGAAAAGAAATGGATAGTTCcgagctggcacacaacg
ttgtttcaacgtttatctaacgttcacaacgtccatataacgttaaatga
acgttgaaacaacgttgtgtgccagctgggtcttTAACGTAGTAGAATAT
AGAACATAGAACGTTGCTATGTCAATCTATGAACCCGACATCCAATTCCG
TGAAATACATAAAAAGGTGACAAACAAACAATACACCTTATCAACCGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_94:405246..416521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073535 ID=TCONS_00073535|Name=TCONS_00073535|organism=Clytia hemisphaerica|type=transcript|length=11276bp|location=Sequence derived from alignment at scaffold_94:405246..416521+ (Clytia hemisphaerica)
TTCGACTCTTCGTTATGTATACGCTATCATAAAggaaaatcctcaaaact
cgtCATCTTGACTGGGGTAAGAATGATTGAAATAATGTTAAAACGCTCTG
AGAGTCTCATcaagatttatcaaaatttcgcattttaaaagttaaaagtt
aCTGTAGTCAAAAATATCACGCCCGTTAAATCTGCAGTTTTAAAAGAACT
AAacattaagggctctgaccatagtgaatttttcataattgccgtgttta
aaatgtgttttctgactgatgtaaccaacaaaactatggcatgttataca
ttttctgttagacaaactattcctgaatctgaaaattcaaaaattgcatt
gaaaaaatttgatgaagaagaaaatgaagacttttgcgatgaagagtatt
tcaactttgaagagcttagtttcggcgaagaaactcgtccgaaaggacga
ggaaaattcgaaacaaaaaaatcgcgagtgcaattttcgaattgtacgag
ttattatgtgattacgagctaatcgcacaatgggtttcactactttttcc
cagttatgaaagtaaattacactgaaagttttatatttttctcttctctc
tatGCCGTctctatgtttttcttttattgttgtttatagattttctttct
cacaaaatgaatttcgaatgcaattaaaacgttcgatgaaaaaaaaatgt
gagaaaaaacattaaaatcaattttataaacattggcgctgcatcgaaga
gtgtgattaacgatttattgctctctacaggatgcaattaacgattaatt
gctctctttgagggcgcgacaaataagaaaaaataacccatcgtgcgatt
aagttcttaattacttttaaggggtttgattaaaaagcaatttataaagg
caattctttgttaaaagtgttaaagaatctaaaacataacttttatgttc
agatactaaaatcaattttctgactatggtcagagcctttAAATTAATGT
TCGCAAAGAAAATGAATCTTATCGTAATTTCGTAGTTTAGTTTCTTATAT
CGCAAAAAAATCACCTGTGCTGATGTTTATGTATGTCAATTGACTCAGAA
ATTCTCGGTTCCCCTGAGGTCTATTTAAGACAGCATTGCCAAAGCATGAA
TCATATCCAGAGAGAATCGAAGTCAGGTTGTAAATAACAATTATCAACTA
TGTATGAAACTTCTGATATTTGAAATATGCCTTgtattcaataaaataaa
taccaaatttattttcaattatcGTGAGTGGTAATTAAAATTATTGTCTG
CATTCAACAATAACACTTCACGGGGCTTATTTTTTGTTAATGCGTCACCG
CATTACTCTCGTACAAAATGGaggaaaaaaattgttatttacACCACCGG
CTGTGTTTTACTATAAGACAAATATCTTAAGGCCTGGCATTCCTTAATTT
TTATAGGAAAATCAGGAAAATgttttacttacttacttgtttttaatttt
ataagaacatagtACATAAgaacaaaatggtgaaaataagaacatacacg
tttttttttatataaggaacacgtttataaggaactcgagcctgaaaatg
gtccaaaaactaaggaattgttaaggaactgctcaggctgagaataagaa
aacaagttttaaggaacagtaagagatggttatccaaacttagcagctat
gtaaataAGGAACTCGATAAGGAACTTTGAtcctgaaattctctgtaaaa
ataaggaactccaggctcagagcaaagttaaggttccttataaaaaaaaa
cgtgtatgctaagaacatctttaggcttaaatctcaaaaagttaagaaca
tcagaaTATATTAAGAATCATCAGCGTAAGATTTGGCAACTGAATCTAAG
AATGCcaaattttcagatattttaAAGCATTTTGACCAATAATTGGCTAa
tccgaggggtaaatcacttcgaaaaagcgtacgaaatgatttttgatttt
tgttttttttgtgattttttgatttttttgtgatttctttttgatttttt
gatttttttctgtgatttttttgtgatttctttttgattttttgattttt
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtgatttttttgtgatttttttgt
gattttttgatttttctgtgatttttttgtgattttttgatttttctgtg
atttttttgtgattttttgattttttttttatttttttgtgattttttga
tttttttgtgatttttttgtgatttctgattttttgcatgatttttttgt
gatttttctaagaagtgtacgagattttttcgagtaatttacccctcgGG
CTAATCTGCCACCTTCGCTCAAAACTTTTACGCAaagggcccccagcggt
ttgagTGAATGCGTGAACAGTGcgtgaaaatatttaaaaagctgCGTAAA
TGCGTGAATAGACCTtagagttttttgatttttctaaaaaagcgatgaat
tgtgggattgtttcgagtgtgttacaatagaaatctcttaggaattcctc
aatggaattctattgtaatacaatcgaaacaatcccacaatgcatcgttt
ttttagaaaaatcaaaaactccgataaggtctattggaaaactttgcgtg
aacagagtttgcgtgaatttcgtgAATTTGGAGATAACAATCTGCTCGGG
AATGCCCGTCTTATTTCTTATGAGATGGACAAAATAATAAATAGTGAAAA
TtagaatattaagaacatttttaagcttaaactCAAAGAGCTagaaacat
ccgaaggcttcgtaAAATTTGGACGTTCTTAAAAACAACCATATATGcct
ttaaaaagttttatgaggaaattggccaaaaaataaaGCATATGCCAAAA
TACCACCATCATTGAATTTTGCAATTTGTTCTGAAcctaaaaatgtaatt
ttttagaTTGATTACTAATGATTACCTAGAAAAAACTTTTacagaaataa
aaaacattttcttgaggtGTATTACATGCTAGATTTAAGCTGGGCTTTGA
TTCTAGCCTAAGAATACCACAATAATATTTAAGGttgatttttctcaaaa
gtttaGAATATTCGtgataaaatggaaaaaacaccattcttataaaaaaa
agcgtgtaattaaGTTAGTCAGGTTTAATTTCTAAAAGATGAAGAATTGT
CAGATCATTTGATAATCTATTTAAATTAAGTATCGGCACGCAATGTTTCC
TCCCGCGgagaaaatacttaaataacCAACATACTTAGTCGAGACAAGCT
TAGCGTAATCATTTTTTCTTATCAATAGCATACCGAGTTGGTTCAAAAAA
TGTCAGTTCAACGCTCGTCTTGCAAACGTTGGCAATATACTTGCATCTTT
AGAATTGCACTTGAAGTAAAGACAAAGATCAAACAAAGCCATTATTACAA
ATATAAtccaaaaacattcaaaaatacaCTGACCACCTcactcgggtgaa
acaaggcatgtcccaaatatattttgcgtgacgcacaccgcttcccatta
ttcattaactttcatatatagctcaaaagaatcgtatCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAATTTAcatcaagccaatctcaagatatcggccaaaaactgattttga
cgttataaaatacatcgaaaaaacacgtcaaaaagacaatttaaatgacg
tcattattaaaaaaaagctcaggatctgaggatccaaaagttcaaaaata
gtccaataagactcagaatatagcctggaagtctgccaacccctcccaaa
ttgaaatattcgataaaattaaaaagacagccaaaaatcgactttctcgc
cagaactttaaatcttgaaaaacgttaaaataaccaaaattctcaatata
ttatgaccttaattgtacaaaagatgtcacggaaccccaggcttggcccc
tactataaagtgcactttgggaagcttgtaaaatatacccttaagggccc
CACTTACGgtaatttatacaatttttCATCATTATCTTTGCAGAACGCTC
GTAATGCTCTATTGTTCCCATACCTCATCAAGAAAAAGATCAAGCGATGT
GGAACGGTCACACAGTCGAAAAATTACAACCAAGGCGTTGCTAAGAATCG
TAAAAGAAGATTTATCCCGCAAGGAACTGCTTGGAATAAAAAGGTTAGCC
AGTTAGACCTAAATTAAGGTAAAGTTTGATTAACCTTAATCTTTTTACTA
TCTATTAATGAAAGCATGTCTGTGATTCAAACCAAAAGTTCGCTCAACTG
GAAAGTCTcgaaatattttcattaatCGGAATACTTCTATATTTATATTT
AATTCGAAAACAAAATTCTTTGTTTCTCGAAGATCCAATTAGAGAGAGTT
AGCAATTTTATCAAAGACCCGGTTAaaacaatgggcttttccagaaaaaa
accgtatacctcctgttgaggagtccatttccgttccaacggaGTAAGGT
TTGATGTGTGGCGGAATTACATaaggagatacaaaaatctgtcaaaataa
TAAGTGGAATTTTATGGTGGTAGCCTTTTAAAttctactaaaattcagaa
tttcaAAGGGGTGTAAACCTGAAACTGTCTGGAATTCCAGGGgattacag
catttccagccacagagggatgAACCTCCTCAAATTTATTGTGAAATAGC
TGGAAAAAGTTCACAAACAAGCCTTATGTTATGTCTCTCTTAGTAAATAA
TTAATTGAACCATGTATCAAGCCACGCAAAAAAATAACCCTGGAATGCCT
CCAATTTTCGTCCCTGGAATCACCCCATACTCATTTTAGTAATcaaccaa
cttttttttagttATTAGCCTGGAGAATCGACGAAAATACAAATGACCTA
CCCAACTTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATTTGGTC
GAAATGGATTCCGATAACTttccaagaaaaaaataaaggcaAAGTCGATA
TTTCGATCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAGCTTTC
ACTGGACAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAAGGACA
AggttggtatttttttctttgataagTATAGAAGAATTGTGGATGACGTT
GGGAATTTATGATAGATTTTCAAATGTTATAATCGGTTAAAATCCAGTCC
CTCAAAATCCAAATTAAATCccaattttcctgtttttctcAAAGGACTTG
ATCATTGTTTCTTTTTGCGTTCTCACagaaagcaaaaaaagaaaaagaaa
taggaACCGAACCGGGCCACTTAACAGGTCCACCCaatctatcaaaaagc
tatgaTTAGTCTCCGGGCTAGGTTGGATTTgtttagcaaaaaaattaaaa
ccataTTAcacctagtctgaatcgcagacctctatagatatgaTTGCCCT
CTCTCTCCACCTCCCTAGGCTGGATTTGTCTTGTTTTTAGTTTCATCAAT
TTGTTTGTATTTCTGTTTTCCAGACATTGCCGGAGACATTCACTTCAACG
ATGACCAAAGGTTCACCCACAATGCTGAACCTTCAAACAGAGGGGGTATG
GGAACTAATCTAGCATGGTCTGCCCTCCATGAGATAGGACACTCTTTAGG
TGAGATTTGGTTGGTTGTTATAATGCGTCTAATACAGTCATATGTGTCTT
GTGTTATAGGATAATACAACAATTGTTAcaggataatatcagtttgtctt
ttccaatattttttcatctttttctaCTCTGGCTGAACTGGTCATTTACA
ATCCcacacaaaatatttgagacaaaaaggatttgcttttgaaattttaa
acaccacaaataaTTTTTAAGCGAGTTAAactagagttttaacatgacaC
TTAAaacttacgaccttaggatctcaggagttaaaagctcaaaattgttt
CGGGcaagattgggcttttccagaaaaagattttacacccgctgttgagg
atatcaacttttaaaaatatactaaaccccctggatatcctctcttataa
agatgcttacccattggatatcgtattttttacttgaaaagacactttac
ccctggatatccgctcccttgcaGATAttaaaccccctggatatccactt
ttgagcaaaaatcgttaaccccctggatatcctctcttataaagatgctt
acccattggatatcgtattttttacttgaaaagacactttacccctggat
atccgctcccttgcaGATAttaaaccccctggatatccacttttgagcaa
aaatcgTTAATCCCCTGggtatccgatatcctcaacaggagGTGCACgga
ctatttttggaaaagcccattgtagCCTGACAATTCTGTCTTTGTCAATT
TCTCGGTGAGGCGTTGATCAGCCTGGATAAGAGTTCAAGGCTTTTTATCG
CCTGTTCCAAATCTTCTGTTCGTGActagatttttgtttttgttggaaag
CTTTTAAGAAGAATTATCGAATTAAGGGTTGGTACTCCAGCATATACATA
TATATCTTTCACAATGGTGTATTGTTCTGTGATTATAAAGACCTAAAGTG
CAGTTTTTTTATTAGTAAATcgtaatcgttttttttttacccaCGCTATT
TTTCCTcccttttgttgtttttcttttttgaaaaacatatttaCTTAAAT
TTAGACTGCTCGAATTAATGGCCTGTGACATATTTCAGATTTATGCAACA
TAACATGTTATGGTTCCCTAACCATACCATAACTTAGGGTCATCTGCTTT
AactctttttttgtttctactAGATGTGTGGAAACCATGATTGAAAGAAT
TACTTTTAAATACAATAACATTGTTTCCACATTATAGAAAAGGAGAGCGC
ACATttaagcaattccattggttaATTATGGGTCTACTACGATTTTACCT
AAAAAgtgatttcaaaaattatttNTttaagcaattccattggttaGTTA
TGGGTCTACTACGATTTTACCTAAAAAgtgatttcaaaaattatttaaca
AATTTAAAGACCTCTAGAAATTATTTTAACCTCGAATCAACTTTTGTTTT
CTATATCTTAGGGCTTGAACATTCGAACATATACGGCGCAGTAATGTCAC
CCTTTTACACCTCATTCTATCATCCTGGAGTTGATCTAGCCTTGACTAAT
GACGATATCAAAGGTGTCCAGGCCATTTATGGTATGATTCTTTCTCTCAT
CATGTTCGAAATGAGTCACGTGGGTTTTCTGGACCAATAGGCTTCTTCCT
AATAGTAGTATTATTATAAATCTAAGATTTATCAAAATGGTTTGTTAAAG
AGCGCTCTCTTTCCAGATTGCTTATGATTCTGAGCCGTGCCTGATTTTTC
ATGTTCGAGTTTTCTCGTTCACAAATGAAGGTCAAGGACACAACCGATCT
CGCAACCGATCAGACGAACCCAAAGGCTAAGAGGCTAAAGTAAGGCTAGG
GCTGAATCTCCTATgtgtaggatttgaagccaaatATTTACTACCTAGTG
GCATGAGccacttttttttactataaaccctcaaaatacttacaaaattc
gaaaatgttaaccggaaaaaaaaaagtGCTAGATTTAATTCGTCAGAAAG
GAAGAGCAAATTTTAAGATGTTAGTTTCGCTTACGTCTCTAGCCATCAAA
TATAACTCATTGAAAAAGCTTCTTACAGAAATTGCATAATACAATGagaa
aatgacattttgaaGCAGAATTAAACTTCAGGTTGTGCTTTCAAATTTgc
tcaatacacctttttgaccgtagtcgcgcggtcaggtaCGTGCCACTTTA
TCATTTAATTACACCCCTGAAACTCAATCCAATCcttatttatacttttt
tctaaTGTCTTTAGGTGCacaaaaaagactgggacggttttagggcggta
aaacagacaaaaaatgtcCGCGCGGCATTTGGCggttacggtcgaaaagg
tgtattttactttttctacACAGGCAATTTACCTTTTTATCCTGTGagat
taatattttcaaaacttacGCACGTGAAAGCACTTTCTAAGTAAGATTTA
CATGAAATTGAATTGTGTGAATTCTTAAATTCCATAGAGACCTTTCACAA
GCATGCCCTGCAATGCTCAAAATTTAAGCGCTCCCCTCATCCCATTTTCC
CAAATTAGCATATTTGATAGGATTTTTGTGCATCTGTTACGTGCTAATTT
CTATTAAATTTAAAGGAGTAAAATGCACAGATTTGTGCAGATTTCGCCTC
AAAAAAGACGGtgaaaaagattatttttttgtcaTCATTAAATTGACTtg
ggaattcaaaaaaaattcacaacaGAGTACTTGACCAGAAAAAGttgatt
acacgcttttttataagaatggtgttttttcatttcatcatcaTGGATAG
TCtgaactttttggggaaaatcattatcaaaatttttatacGGTATATTG
TTAGGTTATATTCCAACCACCCAGCCTAATCTagcatgtaatacatacct
cAAGCAAATATTTGGCAAGAACTTTTAGCCTTGCTGGGGAATAATTGgaa
ttttacaaataaaatgctcAAAAGATCctgtgccgtaggaagcattttct
tattgggggggctgaagtttagtgacaccgcgagggccaaccatggtttg
acCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGt
ttggcccggggggggggattttgaaaatctaggctctagattgcttgaaa
atgcactcaaaacaaaatgctttcaagaaaaaaccagaaaaactttgcat
tttgcaaaataaccatttttgaaaagattattGGGGACATAGCCTCCCCC
ctcccagttgctacggcactgagatcggtattcttaggttcagaTGCGAA
ATCCCATGATGGTGTCATTCCAGAGAAATTGAAAGGGATAGAAAAAGCGC
TTCTCTGATTATCCAATAAAGTGTTCTGATCGTTTCTATTGAAAACTCGA
TTGTTTCAGCTTTAATTAGGTAgttagaaaaagttaagaaaaaacgGCTG
ATATCATGCCCCTGATATAAGGTTCTCGCATAATTTGACCtgaaacaaaa
aactttcgtcACACTACGCTGattatacacattttttaaagcGAAAACTT
GAAATCCAAGAAGTCCACTAACTGAAAACAAACTTATCCCTTGAGGGCAA
AGGGCCTGGTACATGATGAGCCATATagttccattgttttcaagaagctg
ttctACTATCTCTTTCCATTTTTCTGGTTATTCTtagcattttttttgct
ttagaataatttttttggcaaatttcatcatgaatattcttataaagtat
atcatttttttaacaaaagttTGTACTACAGTGACGTAGAAAAATGTCGA
AAACACGAATCCTAATAATGCTCTACAGACACTTTTGTTTATAAGttgaa
ttgtttttattgatattgCAAAGCTATTTCTTTTCTTGTAACCTCTTTGC
GCAATTCGGTGTTAAAAAtcacttcttctttttctaaatCCTGTGGTCAC
TTCACAATAAAAATCTCCTTTCCATAAAGAAAAccacaaaaagtcaaaaa
caggAACTTCACAACataaacatgtttttattttttccttttccgACCTT
TCCGTCAATTTAGAAAGTAAATTGTTGCAAAACATTTGAACAGCTCATTG
TGACCCGATGAAAGCTAGAACCCAACTGAATAATTCGGCCAAAATACTTC
CTtggtgaaaaatattcttaatttcaaccctttttgaaaaagtgcGCTAT
GGTTTTAATCCAATTTGAAATGGAatttaaaaattgtattttaaaacCAT
CTCTTCTTCTGAAGTTTTTGAGCTAGACACAATAGATTTTCATCCTCATT
GAGTatgtagacgatcctatcgtctacacaggCTCACTAAAAAGGGGCAT
AATTTAGGAGGCGAATAAACGATGGTTAGCCCTGGGCGgagagtaagcag
tggcggaggaggtgtttacagtgtagtctgttccaaactctaccgctGCT
TTCTTTTTCTAAACCACCCTGACGCCCTGATGTTTATTGACCCactaacg
gacgatagcatcgtctacatCGAGTGAAAAAGTTCCACCATTAGCGTAGT
GGGTTGACCGAAATCGAGGCAAACAGCGGAGGCAATCTTAAATTAGTAAT
TTGGCACCctattaaaagtaaaatatcGTGGGAAGCTAGCacaaaagttt
ttgactttttttatctttttgtctGAAATCTGCTAATTCTTAGATATAAA
AAAGCAGAGAGTGGCCGGAATAAGTAGCCAGAGGTGCTTTTTTGCGCTCT
TTGTCCTTCAGCGCCTCAAAATATCGGCCACTGGTCCCCTGCCCCAATGC
TACTGAGTTCTACCTGGGTACTGAGAAAGTTGTTTATACAGCAGTTTTTT
TTACCACATCTTCTATTGCACCATTTCAGGTAAATCAACACACAGCAAAA
CAAATCGAGTCGATTCTTTTCTTGTAAAATGAGTAGTTGGTGTGAAAAAA
TGAATGGAGGAGAAAAAGGAAGCTGATTTCTTAGCTGATTTTAATGCTAT
GCGCGTTTACCAGTGTGATGCATGCACAACAAGATAGTTTAACAACGAGA
AGAAGATAATCATGATGTGGTTCCTAGAACGAGTGAAAGAGAAAAGAAAT
GGATAGTTCcgagctggcacacaacgttgtttcaacgtttatctaacgtt
cacaacgtccatataacgttaaatgaacgttgaaacaacgttgtgtgcca
gctgggtcttTAACGTAGTAGAATATAGAACATAGAACGTTGCTATGTCA
ATCTATGAACCCGACATCCAATTCCGTGAAATACATAAAAAGGTGACAAA
CAAACAATACACCTTATCAACCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045641XLOC_045641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073535-exon-scaffold_94-1491911889:405246..405311TCONS_00073535-exon-scaffold_94-1491911889:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:405246..405311TCONS_00073535-exon-scaffold_94-1510915933:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:405246..405311TCONS_00073535-exon-scaffold_94-1575043694:405246..405311Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:409539..409688TCONS_00073535-exon-scaffold_94-1491911889:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:409539..409688TCONS_00073535-exon-scaffold_94-1510915933:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:409539..409688TCONS_00073535-exon-scaffold_94-1575043694:409539..409688Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:410357..410597TCONS_00073535-exon-scaffold_94-1491911889:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:410357..410597TCONS_00073535-exon-scaffold_94-1510915933:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:410357..410597TCONS_00073535-exon-scaffold_94-1575043694:410357..410597Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:411019..411144TCONS_00073535-exon-scaffold_94-1491911889:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:411019..411144TCONS_00073535-exon-scaffold_94-1510915933:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:411019..411144TCONS_00073535-exon-scaffold_94-1575043694:411019..411144Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:412607..412726TCONS_00073535-exon-scaffold_94-1491911889:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:412607..412726TCONS_00073535-exon-scaffold_94-1510915933:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:412607..412726TCONS_00073535-exon-scaffold_94-1575043694:412607..412726Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1491911889:416075..416521TCONS_00073535-exon-scaffold_94-1491911889:416075..416521Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1510915933:416075..416521TCONS_00073535-exon-scaffold_94-1510915933:416075..416521Clytia hemisphaericaexon
TCONS_00073535-exon-scaffold_94-1575043694:416075..416521TCONS_00073535-exon-scaffold_94-1575043694:416075..416521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:405246..416521 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.551723	0.923439	0.282133	0.597767	0.218021	0	0.548155	0.0337525	1.58808	3.32525	2.24532	1.17676	1.05298	1.49709	1.21958	1.73341e-05	0.314549	1.81487	0	1.61642	0.328435	2.63549	2.28048	1.89191	1.23021	0	18.3657	19.2895	0.286576	0.804612
Blast
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BLAST of TCONS_00073535 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.635e-31
Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:  205 WNKKLLAWRIDENTNDLPNFLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTGQDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSALHEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS 711
            W +  L +RI+  T DLP       I KAF +WS   P+TF + ++G+ DI I FV+  HR     F G  G +AHA+ P  G  I GD HF++D+R+T+N           NL   A HE+GHSLGL HS   GA+M P YT       D+ L  DDI G+QAIYG+S
Sbjct:  109 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR-DNSPFDGPGGNLAHAFQP--GPGIGGDAHFDEDERWTNNFRE-------YNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF----SGDVQLAQDDIDGIQAIYGRS 263
The following BLAST results are available for this feature:
BLAST of TCONS_00073535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP14.635e-3143.20Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
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