TCONS_00073529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073529
Unique NameTCONS_00073529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=transcript|length=725bp
GTGCGAGttcattttcaattaaatttgaaGCAATCCTGTTTTTATTTAGA
GTTTTGTACTTGGACTAACCTCTCGCGAATATCATTTGACCTTCTGTGAA
gatcgaaacaaaacatcaataTGGGAAGATTTGTGTTATCAGTttctttg
accattttgttggtTAGCATTGTACTTTGcgcaaacaacaacaacaacaa
caacaataataacaataacaacaataatNCCTGAAAgataaaagactgtt
ctttaacataattgccggttttgcaaattccatgaagagtttttcttaaa
atctatgctgaagatgagtaaaactttcaaaatttaNAACAACAACaatc
aaaataataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAAC
CCTTGGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTG
CTGTGAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGAA
CTGCTACGTACGATACACTATCTCAATCATGTACCAATGGCCGTGTTTCA
AATATGTCGTCTAAATGTAATGGATGGAACTTCAACCCTCACAATGAATT
TTGCCATCAAGGAAAATTATACCAACTTCGTTATTTCGTACTTTGTAATG
GAAATGTTTATCGCAAGTTGTAAAGAAAAATAACTATGATTAGATTTGAA
CTGAAGAAAATATAGTTGCCTGTTA
Run BLAST on NCBI

protein sequence of TCONS_00073529-protein

>TCONS_00073529-protein ID=TCONS_00073529-protein|Name=TCONS_00073529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MLKMSKTFKIXNNNNQNNNNQNNQNNCPGTNNPWEYCNGIRYDPVSEWCC
EGRLNNKRAFYRCCGTATYDTLSQSCTNGRVSNMSSKCNGWNFNPHNEFC
HQGKLYQLRYFVLCNGNVYRKL
Run BLAST on NCBI

transcript from alignment at scaffold_94:243446..247285+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=transcript|length=3840bp|location=Sequence derived from alignment at scaffold_94:243446..247285+ (Clytia hemisphaerica)
GTGCGAGttcattttcaattaaatttgaaGCAATCCTGTTTTTATTTAGA GTTTTGTACTTGGACTAACCTCTCGCGAATATCATTTGACCTTCTGTAAG TGCCTGCTTGGAACTATATTCTGGTATTCGATGAATTTCTTGACCATATT AAGTTTAAAAGACAGATATTCTATATTTGATCAACGAGCAATAAAATGAT tggtacagtatgtggcccccaaaacgtcgatcaagtttgaaatttctctt AAATCTAGAGTGAAAGaggttttataaaatttttgctgcatacaaaattt ttttaacatctctagttctttttcaaaattttcaatttcaccaatgtttt ttaattgcttaaagataggtagcttttttctttttgctccCAAAATGTCG GTTTGCAATTTTAATGATTTCTCGAGATctctttaaccctattagcccca agcttttttgacttttgtatccccagggggggtagaatctaccaccctcg attattttcgatctacNTtatcaaatccgccaaattccgccaaaatttct tcccttaaggtaacattttttcccaaaatcaaatctgataaGTGGTAAAA ATGATCATATCAATTAACCCTTCGCATCATTTAAGATGCAGTTTGCATCA TCAAACATAGAGTTACGAAAATTACTGCAAGGAAATTAATTTATGTTTTA AATAGGTGAAgatcgaaacaaaacatcaataTGGGAAGATTTGTGTTATC AGTttctttgaccattttgttggtTAGCATTGTACTTTGcgcaaacaaca acaacaacaacaacaataataacaataacaacaataatNCCTGAAAgata aaagactgttctttaacataattgccggttttgcaaattccatgaagagt ttttcttaaaatctatgctgaagatgagtaaaactttcaaaatttaNAAC AACAACaatcaaaataataacaatcaaaacaaccaaaacaattGTCCAGG AACAAACAACCCTTGGGAATATTGTAAGTATGTTCTATAGGCTACCCAGG GGGAGGGGGcactgcaaattttttttccgtgaacGGACGGAAGTATCTTC GACGGTCAGAAGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNtgtctaattttcgcaccgagtgggattcgaacc accaccaaagaaagaccttcagattcggaagccagcgctctatccattga gccatcgccgcacagcaaatgCACGCAactcataacatattataccgaac tggcaaaagacggggtaatgttattataatatgggtaaaagtaccccttt ttaaactgactgaaattcgagccgttactagcaaccctgcggggcNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNaagccgttactagcaaccctgaccctacctaattGATTGGTAat gacccaataccccctgaaccacggaatgacggataggaaaaattaaaagc gatactcccgaccgtcaaaAGATGATACTTCTGACCGTCCAAGATACTTC CGTCCGTTCACGGAAAAAAATTAGCAGGGGCACTAGGATTGGCCGATGAG GAGTATGTCTGGACGGGACCTCCGgaaaccaacccttagagagattgttt tcttctgaaaaggtgacccttagagggactttGAAAAACTTAGAAAATTT CCTTCCATCTTTGAAAAAAgtcctacccttagagagacctttttacaact ttttcattttttcaaatcaaaagaatttcctaaaaattgtgatttttccG ATCCTAAGAGTcttttgaaaggtgaaaaactgacccttaccgcctgcaca tacccagcacccatttttgcccaAGTACCCCCAACCCCGCTAGTAATTTA TTTAGTATTTAAACCTAAAAGATTTCTTTGACTCTTTCTCCCCAAATATA GCAGCACAGATTAATTTTTATATCTTCCACAATCTTCATTCAGGCAATGG AATCCGTTATGACCCTGTCTCAGAATGGTGCTGTGAAGGAAGATTAAACA ACAAACGTGCTTTTTATCGATGCTGTGGGTAAGTCAATTTGAAttccaaa gaaaaattgcattttgcgggaattaattttcgcagttttgTCCTTTGTTG AACACATTTTCCACTTTCCTAGtgaaatttcaaatcttttgaTGCAAAAT GGCGAAATATGCATTTCACGGGTCCTAATTTTCGTGGTTTTGCCGAAAAA TTACGGAAatagcaaaaattagttcccgcgaaaaaaagttcccttaagga TAATAAAAAGGCTATTTTAAAGAAGGCACAAACAAAGGTAATACTACACC CCTGTCTTACAACCCCAGTGGGATTTCTTCTCACACCGAGGATAAAAAAT TATATCGAAAACCCGATAAGGATAGCTAATTGTTCTCAGGTAAAAAATCT TGTGAGGAGTGTCTTAAGGTGCAATTTTTCAAATGAGGATGAAATCAATG TTTATTTCCCAATCGGGTTGCAACTTTgggatatttttcccaccggtgaa attttagccaatttttgcAGTGGGATGAATGGGACCTACTGCGTCAGTGA CACGGAGATGTCTTTGGCTATTCTAAAGAAGGCACGAACAAATGTAGTAC AaggtttttttatgaaacaTCGTAgttttcagatgttcttaactactcga gttttaagcctaaacatgttgttaaaatgttcttaatttcacctgctctt aacttgctcttaccgtaaatcaccgattaagcgccccgcttgaattagcg ccccgctcgaataagcgccccccatttagttaaaataattttataagcac ctacctcgaataagcgccccagtttgaataagcgcccccctccatccttt tttgaagttaagtttaagcagattccgaatttgttgatatacgaatttct gaaataaaaaaataagcgccccgcttgaataagtgccccgcttgaataag cgcccccctccatccttttttgaagttaagtttaagcagattccgaattt gttgatatacgaatttctgaaataaaaaaataagcgccccgcttgaataa gtgccccgcttgaataagcgcccccctcagagcctgaaaaattaaataag cacccgggcgcttaatcggtgatttacggtaaTTCTATTTGGGCCGGGGG GGACTAAAAATCCCCCTCTACAACTTGTTTTATAATAGCTTTTTAACGCT ATGGTTATCGAAgtctcatgttcttatatagtttgttttaataaaaaact ttatttttaccAGAACTGCTACGTACGATACACTATCTCAATCATGTACC AATGGCCGTGTTTCAAATATGTCGTCTAAATGTAATGGATGGAACTTCAA CCCTCACAATGAATTTTGCCATCAAGGAAAATTATACCAACTTCGTTATT TCGTACTTTGTAATGGAAATGTTTATCGCAAGTTGTAAAGAAAAATAACT ATGATTAGATTTGAACTGAAGAAAATATAGTTGCCTGTTA

Coding sequence (CDS) from alignment at scaffold_94:243446..247285+

>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_94:243446..247285+ (Clytia hemisphaerica)
atgctgaagatgagtaaaactttcaaaatttaNAACAACAACaatcaaaa
taataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAACCCTT
GGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCTGT
GAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGAACTGC
TACGTACGATACACTATCTCAATCATGTACCAATGGCCGTGTTTCAAATA
TGTCGTCTAAATGTAATGGATGGAACTTCAACCCTCACAATGAATTTTGC
CATCAAGGAAAATTATACCAACTTCGTTATTTCGTACTTTGTAATGGAAA
TGTTTATCGCAAGTTGTAAatgctgaagatgagtaaaactttcaaaattt
aNAACAACAACaatcaaaataataacaatcaaaacaaccaaaacaattGT
CCAGGAACAAACAACCCTTGGGAATATTGCAATGGAATCCGTTATGACCC
TGTCTCAGAATGGTGCTGTGAAGGAAGATTAAACAACAAACGTGCTTTTT
ATCGATGCTGTGGAACTGCTACGTACGATACACTATCTCAATCATGTACC
AATGGCCGTGTTTCAAATATGTCGTCTAAATGTAATGGATGGAACTTCAA
CCCTCACAATGAATTTTGCCATCAAGGAAAATTATACCAACTTCGTTATT
TCGTACTTTGTAATGGAAATGTTTATCGCAAGTTGTAAatgctgaagatg
agtaaaactttcaaaatttaNAACAACAACaatcaaaataataacaatca
aaacaaccaaaacaattGTCCAGGAACAAACAACCCTTGGGAATATTGCA
ATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCTGTGAAGGAAGATTA
AACAACAAACGTGCTTTTTATCGATGCTGTGGAACTGCTACGTACGATAC
ACTATCTCAATCATGTACCAATGGCCGTGTTTCAAATATGTCGTCTAAAT
GTAATGGATGGAACTTCAACCCTCACAATGAATTTTGCCATCAAGGAAAA
TTATACCAACTTCGTTATTTCGTACTTTGTAATGGAAATGTTTATCGCAA
GTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045638XLOC_045638Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073529-proteinTCONS_00073529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073529-exon-scaffold_94-1491911889:243446..243540TCONS_00073529-exon-scaffold_94-1491911889:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:243446..243540TCONS_00073529-exon-scaffold_94-1510915933:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:243446..243540TCONS_00073529-exon-scaffold_94-1575043694:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:244151..244468TCONS_00073529-exon-scaffold_94-1491911889:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:244151..244468TCONS_00073529-exon-scaffold_94-1510915933:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:244151..244468TCONS_00073529-exon-scaffold_94-1575043694:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:245739..245823TCONS_00073529-exon-scaffold_94-1491911889:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:245739..245823TCONS_00073529-exon-scaffold_94-1510915933:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:245739..245823TCONS_00073529-exon-scaffold_94-1575043694:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:247059..247285TCONS_00073529-exon-scaffold_94-1491911889:247059..247285Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:247059..247285TCONS_00073529-exon-scaffold_94-1510915933:247059..247285Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:247059..247285TCONS_00073529-exon-scaffold_94-1575043694:247059..247285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:243446..247285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03133 0.469331 1.16772 1.06627 0.370882 0.219807 0.707166 0.601629 0.521449 0.358833 0.168805 0.0915813 33.6297 30.8733 0.663706 0.502771 5.50346 6.50708 139.526 133.723 48.8922 53.7462 23.0865 22.5788 33.0051 38.3113 1.31988 1.308 0.610504 0.622007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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