TCONS_00073529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073529
Unique NameTCONS_00073529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=transcript|length=725bp
GTGCGAGttcattttcaattaaatttgaaGCAATCCTGTTTTTATTTAGA
GTTTTGTACTTGGACTAACCTCTCGCGAATATCATTTGACCTTCTGTGAA
gatcgaaacaaaacatcaataTGGGAAGATTTGTGTTATCAGTttctttg
accattttgttggtTAGCATTGTACTTTGcgcaaacaacaacaacaacaa
caacaataataacaataacaacaataatNCCTGAAAgataaaagactgtt
ctttaacataattgccggttttgcaaattccatgaagagtttttcttaaa
atctatgctgaagatgagtaaaactttcaaaatttaNAACAACAACaatc
aaaataataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAAC
CCTTGGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTG
CTGTGAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGAA
CTGCTACGTACGATACACTATCTCAATCATGTACCAATGGCCGTGTTTCA
AATATGTCGTCTAAATGTAATGGATGGAACTTCAACCCTCACAATGAATT
TTGCCATCAAGGAAAATTATACCAACTTCGTTATTTCGTACTTTGTAATG
GAAATGTTTATCGCAAGTTGTAAAGAAAAATAACTATGATTAGATTTGAA
CTGAAGAAAATATAGTTGCCTGTTA
Run BLAST on NCBI

protein sequence of TCONS_00073529-protein

>TCONS_00073529-protein ID=TCONS_00073529-protein|Name=TCONS_00073529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MLKMSKTFKIXNNNNQNNNNQNNQNNCPGTNNPWEYCNGIRYDPVSEWCC
EGRLNNKRAFYRCCGTATYDTLSQSCTNGRVSNMSSKCNGWNFNPHNEFC
HQGKLYQLRYFVLCNGNVYRKL
Run BLAST on NCBI

transcript from alignment at scaffold_94:243446..247285+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=transcript|length=3840bp|location=Sequence derived from alignment at scaffold_94:243446..247285+ (Clytia hemisphaerica)
GTGCGAGttcattttcaattaaatttgaaGCAATCCTGTTTTTATTTAGA
GTTTTGTACTTGGACTAACCTCTCGCGAATATCATTTGACCTTCTGTAAG
TGCCTGCTTGGAACTATATTCTGGTATTCGATGAATTTCTTGACCATATT
AAGTTTAAAAGACAGATATTCTATATTTGATCAACGAGCAATAAAATGAT
tggtacagtatgtggcccccaaaacgtcgatcaagtttgaaatttctctt
AAATCTAGAGTGAAAGaggttttataaaatttttgctgcatacaaaattt
ttttaacatctctagttctttttcaaaattttcaatttcaccaatgtttt
ttaattgcttaaagataggtagcttttttctttttgctccCAAAATGTCG
GTTTGCAATTTTAATGATTTCTCGAGATctctttaaccctattagcccca
agcttttttgacttttgtatccccagggggggtagaatctaccaccctcg
attattttcgatctacNTtatcaaatccgccaaattccgccaaaatttct
tcccttaaggtaacattttttcccaaaatcaaatctgataaGTGGTAAAA
ATGATCATATCAATTAACCCTTCGCATCATTTAAGATGCAGTTTGCATCA
TCAAACATAGAGTTACGAAAATTACTGCAAGGAAATTAATTTATGTTTTA
AATAGGTGAAgatcgaaacaaaacatcaataTGGGAAGATTTGTGTTATC
AGTttctttgaccattttgttggtTAGCATTGTACTTTGcgcaaacaaca
acaacaacaacaacaataataacaataacaacaataatNCCTGAAAgata
aaagactgttctttaacataattgccggttttgcaaattccatgaagagt
ttttcttaaaatctatgctgaagatgagtaaaactttcaaaatttaNAAC
AACAACaatcaaaataataacaatcaaaacaaccaaaacaattGTCCAGG
AACAAACAACCCTTGGGAATATTGTAAGTATGTTCTATAGGCTACCCAGG
GGGAGGGGGcactgcaaattttttttccgtgaacGGACGGAAGTATCTTC
GACGGTCAGAAGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgtctaattttcgcaccgagtgggattcgaacc
accaccaaagaaagaccttcagattcggaagccagcgctctatccattga
gccatcgccgcacagcaaatgCACGCAactcataacatattataccgaac
tggcaaaagacggggtaatgttattataatatgggtaaaagtaccccttt
ttaaactgactgaaattcgagccgttactagcaaccctgcggggcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaagccgttactagcaaccctgaccctacctaattGATTGGTAat
gacccaataccccctgaaccacggaatgacggataggaaaaattaaaagc
gatactcccgaccgtcaaaAGATGATACTTCTGACCGTCCAAGATACTTC
CGTCCGTTCACGGAAAAAAATTAGCAGGGGCACTAGGATTGGCCGATGAG
GAGTATGTCTGGACGGGACCTCCGgaaaccaacccttagagagattgttt
tcttctgaaaaggtgacccttagagggactttGAAAAACTTAGAAAATTT
CCTTCCATCTTTGAAAAAAgtcctacccttagagagacctttttacaact
ttttcattttttcaaatcaaaagaatttcctaaaaattgtgatttttccG
ATCCTAAGAGTcttttgaaaggtgaaaaactgacccttaccgcctgcaca
tacccagcacccatttttgcccaAGTACCCCCAACCCCGCTAGTAATTTA
TTTAGTATTTAAACCTAAAAGATTTCTTTGACTCTTTCTCCCCAAATATA
GCAGCACAGATTAATTTTTATATCTTCCACAATCTTCATTCAGGCAATGG
AATCCGTTATGACCCTGTCTCAGAATGGTGCTGTGAAGGAAGATTAAACA
ACAAACGTGCTTTTTATCGATGCTGTGGGTAAGTCAATTTGAAttccaaa
gaaaaattgcattttgcgggaattaattttcgcagttttgTCCTTTGTTG
AACACATTTTCCACTTTCCTAGtgaaatttcaaatcttttgaTGCAAAAT
GGCGAAATATGCATTTCACGGGTCCTAATTTTCGTGGTTTTGCCGAAAAA
TTACGGAAatagcaaaaattagttcccgcgaaaaaaagttcccttaagga
TAATAAAAAGGCTATTTTAAAGAAGGCACAAACAAAGGTAATACTACACC
CCTGTCTTACAACCCCAGTGGGATTTCTTCTCACACCGAGGATAAAAAAT
TATATCGAAAACCCGATAAGGATAGCTAATTGTTCTCAGGTAAAAAATCT
TGTGAGGAGTGTCTTAAGGTGCAATTTTTCAAATGAGGATGAAATCAATG
TTTATTTCCCAATCGGGTTGCAACTTTgggatatttttcccaccggtgaa
attttagccaatttttgcAGTGGGATGAATGGGACCTACTGCGTCAGTGA
CACGGAGATGTCTTTGGCTATTCTAAAGAAGGCACGAACAAATGTAGTAC
AaggtttttttatgaaacaTCGTAgttttcagatgttcttaactactcga
gttttaagcctaaacatgttgttaaaatgttcttaatttcacctgctctt
aacttgctcttaccgtaaatcaccgattaagcgccccgcttgaattagcg
ccccgctcgaataagcgccccccatttagttaaaataattttataagcac
ctacctcgaataagcgccccagtttgaataagcgcccccctccatccttt
tttgaagttaagtttaagcagattccgaatttgttgatatacgaatttct
gaaataaaaaaataagcgccccgcttgaataagtgccccgcttgaataag
cgcccccctccatccttttttgaagttaagtttaagcagattccgaattt
gttgatatacgaatttctgaaataaaaaaataagcgccccgcttgaataa
gtgccccgcttgaataagcgcccccctcagagcctgaaaaattaaataag
cacccgggcgcttaatcggtgatttacggtaaTTCTATTTGGGCCGGGGG
GGACTAAAAATCCCCCTCTACAACTTGTTTTATAATAGCTTTTTAACGCT
ATGGTTATCGAAgtctcatgttcttatatagtttgttttaataaaaaact
ttatttttaccAGAACTGCTACGTACGATACACTATCTCAATCATGTACC
AATGGCCGTGTTTCAAATATGTCGTCTAAATGTAATGGATGGAACTTCAA
CCCTCACAATGAATTTTGCCATCAAGGAAAATTATACCAACTTCGTTATT
TCGTACTTTGTAATGGAAATGTTTATCGCAAGTTGTAAAGAAAAATAACT
ATGATTAGATTTGAACTGAAGAAAATATAGTTGCCTGTTA

Coding sequence (CDS) from alignment at scaffold_94:243446..247285+

>TCONS_00073529 ID=TCONS_00073529|Name=TCONS_00073529|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_94:243446..247285+ (Clytia hemisphaerica)
atgctgaagatgagtaaaactttcaaaatttaNAACAACAACaatcaaaa
taataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAACCCTT
GGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCTGT
GAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGAACTGC
TACGTACGATACACTATCTCAATCATGTACCAATGGCCGTGTTTCAAATA
TGTCGTCTAAATGTAATGGATGGAACTTCAACCCTCACAATGAATTTTGC
CATCAAGGAAAATTATACCAACTTCGTTATTTCGTACTTTGTAATGGAAA
TGTTTATCGCAAGTTGTAAatgctgaagatgagtaaaactttcaaaattt
aNAACAACAACaatcaaaataataacaatcaaaacaaccaaaacaattGT
CCAGGAACAAACAACCCTTGGGAATATTGCAATGGAATCCGTTATGACCC
TGTCTCAGAATGGTGCTGTGAAGGAAGATTAAACAACAAACGTGCTTTTT
ATCGATGCTGTGGAACTGCTACGTACGATACACTATCTCAATCATGTACC
AATGGCCGTGTTTCAAATATGTCGTCTAAATGTAATGGATGGAACTTCAA
CCCTCACAATGAATTTTGCCATCAAGGAAAATTATACCAACTTCGTTATT
TCGTACTTTGTAATGGAAATGTTTATCGCAAGTTGTAAatgctgaagatg
agtaaaactttcaaaatttaNAACAACAACaatcaaaataataacaatca
aaacaaccaaaacaattGTCCAGGAACAAACAACCCTTGGGAATATTGCA
ATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCTGTGAAGGAAGATTA
AACAACAAACGTGCTTTTTATCGATGCTGTGGAACTGCTACGTACGATAC
ACTATCTCAATCATGTACCAATGGCCGTGTTTCAAATATGTCGTCTAAAT
GTAATGGATGGAACTTCAACCCTCACAATGAATTTTGCCATCAAGGAAAA
TTATACCAACTTCGTTATTTCGTACTTTGTAATGGAAATGTTTATCGCAA
GTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045638XLOC_045638Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073529-proteinTCONS_00073529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073529-exon-scaffold_94-1491911889:243446..243540TCONS_00073529-exon-scaffold_94-1491911889:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:243446..243540TCONS_00073529-exon-scaffold_94-1510915933:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:243446..243540TCONS_00073529-exon-scaffold_94-1575043694:243446..243540Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:244151..244468TCONS_00073529-exon-scaffold_94-1491911889:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:244151..244468TCONS_00073529-exon-scaffold_94-1510915933:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:244151..244468TCONS_00073529-exon-scaffold_94-1575043694:244151..244468Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:245739..245823TCONS_00073529-exon-scaffold_94-1491911889:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:245739..245823TCONS_00073529-exon-scaffold_94-1510915933:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:245739..245823TCONS_00073529-exon-scaffold_94-1575043694:245739..245823Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1491911889:247059..247285TCONS_00073529-exon-scaffold_94-1491911889:247059..247285Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1510915933:247059..247285TCONS_00073529-exon-scaffold_94-1510915933:247059..247285Clytia hemisphaericaexon
TCONS_00073529-exon-scaffold_94-1575043694:247059..247285TCONS_00073529-exon-scaffold_94-1575043694:247059..247285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:243446..247285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03133	0.469331	1.16772	1.06627	0.370882	0.219807	0.707166	0.601629	0.521449	0.358833	0.168805	0.0915813	33.6297	30.8733	0.663706	0.502771	5.50346	6.50708	139.526	133.723	48.8922	53.7462	23.0865	22.5788	33.0051	38.3113	1.31988	1.308	0.610504	0.622007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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