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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073515 ID=TCONS_00073515|Name=TCONS_00073515|organism=Clytia hemisphaerica|type=transcript|length=1630bp TAAATGATTTTCGTCGCCGGTTTTCCAGGCTAATTAATTGAATGATAACA gttcaatattcaaaatttaTCTTCTAAgcttattattttgaaattttttc ttctcctacagattattgaaaattgataaaCTTAACCAGAGTTTGACAAT CCTAAAATGAATCTaaaccatggcgttctaaatctaaaGCCTAGATTTAG AATGCCATGATCTAAATGTTATGAATGATAGATTTGACATTATGAGActt ctttatgaaaaaaaaatattctactGTAGTTCTTTATAGTTTTCTGGTTA ACAAAGCTCCGTCAAAGTACATCACCATCGTCATTTTCACCATTCAATTT AATGGTCAAAGTTTCTGTTGTTCCATGACGTCGATGTTTGCCTTTGCTGT GTCGCTTTTTCAACGACATCGCGTGCTCTTTCAAGAAGGCGTCTCGACGA agcattttctgtaaattttcacgaaaatctTCATGGAAAAAACAATAGAT GAATGGATTTAAACAGGAACTTAAGTTCGGGAAGTACTCCAGTAATGATA AGACAACGTTTGAAATTTCGAAAGGTATGAAGGTATGAATAAACGTCATC AAGCATAAAGGTGTATAACAAAGTACAAAGGTCccgaaaacaatcacaat cacTTTTGTAGCTTTAAATTCGATTATATGACTCATCCAAAAATGTTTGC ATGGATTATCATGGTGCGGGATAGGAGAAATAGATCCCACTAAATGTTGT GGTGGTTTTCCCTTGTATCTTTCAATCTCTCGACTCTGCTTGACTGCAAC TCTCCATATCTGCAGGTAGAGATAGACCATAATGACGCAGGGTAGAAAGA AAACCACCGGGTATAAACTTCGATCAAAATAAACATCAAATTTTCTACAT TTGTATTCAACAACTTTGAATGTTTCACCAAAGCCAAATGGTGGCGTTAG GTGAACGTTATTCAGGATCACGCCCCAGAAAATGGCGTACGCCCATATAA AAAAGATACATGATCGCCATCTACGCATCAAGCTGCAATGGCGGTAATAA TATGGTTTTGTTATTGAAATATATCTATCGACAGCTATAAAGAAAAGATG AGTGACCGAGGCTGCAAAGAATGTAACATCAGCCGTATGGAGCAATCTGC ACAGGCTAGCTTTGTAACAAAAGTTCATGTTGTTTAGAGCGATGGCTATT TTGATTGGAATGACGAAAACTGATACTAAGAGGTCAGTGATAGCCAAAGA TGCGAGAATTTTGTATGTTGCATGACGGCGAAGCGAGCGGATCTTCATGA TCATTGAGAATGAGAATAAATTTCCGCACAACGCCACAAGAAGGGTGGCT ATGAGGATTAGGGCGTATATGATCATGGGCGGCTCTGGATCTTGACTGCA GTGATGTTTACGACATTCCATCTCACCACTCAAGAATAAGGCAACAGTTC GATATGAAGCATGCTTACTGTGATGGTAATCAAAATCATGTTTTTCACAA GCTGCAGCTGTAGTTGAAATATGATTCTCGATCAGTAGCAAGCTTGACAT ATTCTCTTTGGGTAAAGGCAGTGGCATTTCTGCAATCACCTGACTCAAAC AACATATGTAATCTTGGTTTGGCATCGTCA Run BLAST on NCBI protein sequence of TCONS_00073515-protein >TCONS_00073515-protein ID=TCONS_00073515-protein|Name=TCONS_00073515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
TMPNQDYICCLSQVIAEMPLPLPKENMSSLLLIENHISTTAAACEKHDFD YHHSKHASYRTVALFLSGEMECRKHHCSQDPEPPMIIYALILIATLLVAL CGNLFSFSMIMKIRSLRRHATYKILASLAITDLLVSVFVIPIKIAIALNN MNFCYKASLCRLLHTADVTFFAASVTHLFFIAVDRYISITKPYYYRHCSL MRRWRSCIFFIWAYAIFWGVILNNVHLTPPFGFGETFKVVEYKCRKFDVY FDRSLYPVVFFLPCVIMVYLYLQIWRVAVKQSREIERYKGKPPQHLVGSI SPIPHHDNPCKHFWMSHIIEFKATKVIVIVFGTFVLCYTPLCLMTFIHTF IPFEISNVVLSLLEYFPNLSSCLNPFIYCFFHEDFRENLQKMLRRDAFLK EHAMSLKKRHSKGKHRRHGTTETLTIKLNGENDDGDVL Run BLAST on NCBI transcript from alignment at scaffold_93:109714..111343 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073515 ID=TCONS_00073515|Name=TCONS_00073515|organism=Clytia hemisphaerica|type=transcript|length=1630bp|location=Sequence derived from alignment at scaffold_93:109714..111343 (Clytia hemisphaerica) TGACGATGCCAAACCAAGATTACATATGTTGTTTGAGTCAGGTGATTGCA
GAAATGCCACTGCCTTTACCCAAAGAGAATATGTCAAGCTTGCTACTGAT
CGAGAATCATATTTCAACTACAGCTGCAGCTTGTGAAAAACATGATTTTG
ATTACCATCACAGTAAGCATGCTTCATATCGAACTGTTGCCTTATTCTTG
AGTGGTGAGATGGAATGTCGTAAACATCACTGCAGTCAAGATCCAGAGCC
GCCCATGATCATATACGCCCTAATCCTCATAGCCACCCTTCTTGTGGCGT
TGTGCGGAAATTTATTCTCATTCTCAATGATCATGAAGATCCGCTCGCTT
CGCCGTCATGCAACATACAAAATTCTCGCATCTTTGGCTATCACTGACCT
CTTAGTATCAGTTTTCGTCATTCCAATCAAAATAGCCATCGCTCTAAACA
ACATGAACTTTTGTTACAAAGCTAGCCTGTGCAGATTGCTCCATACGGCT
GATGTTACATTCTTTGCAGCCTCGGTCACTCATCTTTTCTTTATAGCTGT
CGATAGATATATTTCAATAACAAAACCATATTATTACCGCCATTGCAGCT
TGATGCGTAGATGGCGATCATGTATCTTTTTTATATGGGCGTACGCCATT
TTCTGGGGCGTGATCCTGAATAACGTTCACCTAACGCCACCATTTGGCTT
TGGTGAAACATTCAAAGTTGTTGAATACAAATGTAGAAAATTTGATGTTT
ATTTTGATCGAAGTTTATACCCGGTGGTTTTCTTTCTACCCTGCGTCATT
ATGGTCTATCTCTACCTGCAGATATGGAGAGTTGCAGTCAAGCAGAGTCG
AGAGATTGAAAGATACAAGGGAAAACCACCACAACATTTAGTGGGATCTA
TTTCTCCTATCCCGCACCATGATAATCCATGCAAACATTTTTGGATGAGT
CATATAATCGAATTTAAAGCTACAAAAgtgattgtgattgttttcggGAC
CTTTGTACTTTGTTATACACCTTTATGCTTGATGACGTTTATTCATACCT
TCATACCTTTCGAAATTTCAAACGTTGTCTTATCATTACTGGAGTACTTC
CCGAACTTAAGTTCCTGTTTAAATCCATTCATCTATTGTTTTTTCCATGA
agattttcgtgaaaatttacagaaaatgctTCGTCGAGACGCCTTCTTGA
AAGAGCACGCGATGTCGTTGAAAAAGCGACACAGCAAAGGCAAACATCGA
CGTCATGGAACAACAGAAACTTTGACCATTAAATTGAATGGTGAAAATGA
CGATGGTGATGTACTTTGACGGAGCTTTGTTAACCAGAAAACTATAAAGA
ACTACagtagaatatttttttttcataaagaagTCTCATAATGTCAAATC
TATCATTCATAACATTTAGATCATGGCATTCTAAATCTAGGCtttagatt
tagaacgccatggtttAGATTCATTTTAGGATTGTCAAACTCTGGTTAAG
tttatcaattttcaataatctgtaggagaagaaaaaatttcaaaataata
agcTTAGAAGAtaaattttgaatattgaacTGTTATCATTCAATTAATTA
GCCTGGAAAACCGGCGACGAAAATCATTTA Coding sequence (CDS) from alignment at scaffold_93:109714..111343 >TCONS_00073515 ID=TCONS_00073515|Name=TCONS_00073515|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_93:109714..111343 (Clytia hemisphaerica) ACGATGCCAAACCAAGATTACATATGTTGTTTGAGTCAGGTGATTGCAGA AATGCCACTGCCTTTACCCAAAGAGAATATGTCAAGCTTGCTACTGATCG AGAATCATATTTCAACTACAGCTGCAGCTTGTGAAAAACATGATTTTGAT TACCATCACAGTAAGCATGCTTCATATCGAACTGTTGCCTTATTCTTGAG TGGTGAGATGGAATGTCGTAAACATCACTGCAGTCAAGATCCAGAGCCGC CCATGATCATATACGCCCTAATCCTCATAGCCACCCTTCTTGTGGCGTTG TGCGGAAATTTATTCTCATTCTCAATGATCATGAAGATCCGCTCGCTTCG CCGTCATGCAACATACAAAATTCTCGCATCTTTGGCTATCACTGACCTCT TAGTATCAGTTTTCGTCATTCCAATCAAAATAGCCATCGCTCTAAACAAC ATGAACTTTTGTTACAAAGCTAGCCTGTGCAGATTGCTCCATACGGCTGA TGTTACATTCTTTGCAGCCTCGGTCACTCATCTTTTCTTTATAGCTGTCG ATAGATATATTTCAATAACAAAACCATATTATTACCGCCATTGCAGCTTG ATGCGTAGATGGCGATCATGTATCTTTTTTATATGGGCGTACGCCATTTT CTGGGGCGTGATCCTGAATAACGTTCACCTAACGCCACCATTTGGCTTTG GTGAAACATTCAAAGTTGTTGAATACAAATGTAGAAAATTTGATGTTTAT TTTGATCGAAGTTTATACCCGGTGGTTTTCTTTCTACCCTGCGTCATTAT GGTCTATCTCTACCTGCAGATATGGAGAGTTGCAGTCAAGCAGAGTCGAG AGATTGAAAGATACAAGGGAAAACCACCACAACATTTAGTGGGATCTATT TCTCCTATCCCGCACCATGATAATCCATGCAAACATTTTTGGATGAGTCA TATAATCGAATTTAAAGCTACAAAAgtgattgtgattgttttcggGACCT TTGTACTTTGTTATACACCTTTATGCTTGATGACGTTTATTCATACCTTC ATACCTTTCGAAATTTCAAACGTTGTCTTATCATTACTGGAGTACTTCCC GAACTTAAGTTCCTGTTTAAATCCATTCATCTATTGTTTTTTCCATGAag attttcgtgaaaatttacagaaaatgctTCGTCGAGACGCCTTCTTGAAA GAGCACGCGATGTCGTTGAAAAAGCGACACAGCAAAGGCAAACATCGACG TCATGGAACAACAGAAACTTTGACCATTAAATTGAATGGTGAAAATGACG ATGGTGATGTACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073515-exon-scaffold_93-1491911889:109714..111343 | TCONS_00073515-exon-scaffold_93-1491911889:109714..111343 | Clytia hemisphaerica | exon |
TCONS_00073515-exon-scaffold_93-1510915933:109714..111343 | TCONS_00073515-exon-scaffold_93-1510915933:109714..111343 | Clytia hemisphaerica | exon |
TCONS_00073515-exon-scaffold_93-1575043694:109714..111343 | TCONS_00073515-exon-scaffold_93-1575043694:109714..111343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_93 | supercontig | scaffold_93:109714..111343 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00073515 vs. Swiss-Prot (Human)
Match: DRD1 (D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.264e-21 Identity = 86/310 (27.74%), Postives = 133/310 (42.90%), Query Frame = -3
Query: 450 GNLFSFSMIMKIRSLRRHATYKILASLAITDLLVSVFVIPIKIAIALNNMNFCYKASLCRLLHTADVTFFAASVTHLFFIAVDRYISITKPYYYRHCSLMRRWRSCIFFIWAYAIFWGVILNNVH------LTPPFGFGETFKVVEYKC-RKFDVYFDRSLYPVVFFLPCVIMVYLYLQIWRVAVKQSREI---ERYK--GKPPQHLVGSISPIPHHDNPCKHFWMSHIIEFKATKVIVIVFGTFVLCYTPLCLMTFIHTFI------PFEISNVVLSLLEYFPNLSSCLNPFIYCFFHEDFRENLQKML 1325
GN + +++ R LR T + SLA++DLLV+V V+P K + F S C + D+ AS+ +L I+VDRY +I+ P+ Y + I W ++ I + +P G + C + S + F++P IM+ Y +I+R+A KQ R I ER K Q G+ P+ P F MS E K K + ++ G FV C+ P ++ I F PF I + + +F +S LNP IY F+ DFR+ +L
Sbjct: 40 GNTLVCAAVIRFRHLRSKVTNFFVISLAVSDLLVAVLVMPWKAVAEI--AGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQLSWHKAKPTSPSDGNATSLAETIDNCDSSLSRTYAISSSVISFYIPVAIMIVTYTRIYRIAQKQIRRIAALERAAVHAKNCQTTTGNGKPV-ECSQPESSFKMSFKRETKVLKTLSVIMGVFVCCWLPFFILNCILPFCGSGETQPFCIDSNTFDVFVWFGWANSSLNPIIYA-FNADFRKAFSTLL 345
The following BLAST results are available for this feature:
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