TCONS_00073508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073508
Unique NameTCONS_00073508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073508 ID=TCONS_00073508|Name=TCONS_00073508|organism=Clytia hemisphaerica|type=transcript|length=548bp
GTTCAAAGCGAATCATTTGTAATCAAGTGTGTCATCGAACAGTGGCTCGT
ACAGGAGACATCCTTTCACAAAGTATGGCTAAAGTCCATCGGTGCCAACA
TTCTCATCTCTTCCTTTTATCCTCATTACGTTCGGTCGTCATCGAGAAAT
GCCATGACACTACAATCGTCCTTGGGAGCGTCGACACCCTCGTTGTCGTT
ATAGCTTGTGAAAAAATCCGAATTTTTGCACCGTGTAAACGTATCCTTAT
AATGTAAGTATACCGTTGGCCCTTTTACGCCGGTCCTTTTAAACCAATAT
TCCTGAACCTGTTTAATTAGGTAGATCATTTATATTGATGCTTAGACTGC
GAAAGGTTTTATTGGTCGAAACATTAGTTCCAAAAGTGACGACTTAAGTA
CCacagcgaccgtagtacagtggtagagcatccggctacggttcgcaagg
ttgtgtgttcaacccccagccgggtcataccaaagattcccaaaatggta
cttgatacctctctgcttgatgctcagcaattaagagaaggatcaagg
Run BLAST on NCBI

transcript from alignment at scaffold_93:179955..180502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073508 ID=TCONS_00073508|Name=TCONS_00073508|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_93:179955..180502- (Clytia hemisphaerica)
GTTCAAAGCGAATCATTTGTAATCAAGTGTGTCATCGAACAGTGGCTCGT
ACAGGAGACATCCTTTCACAAAGTATGGCTAAAGTCCATCGGTGCCAACA
TTCTCATCTCTTCCTTTTATCCTCATTACGTTCGGTCGTCATCGAGAAAT
GCCATGACACTACAATCGTCCTTGGGAGCGTCGACACCCTCGTTGTCGTT
ATAGCTTGTGAAAAAATCCGAATTTTTGCACCGTGTAAACGTATCCTTAT
AATGTAAGTATACCGTTGGCCCTTTTACGCCGGTCCTTTTAAACCAATAT
TCCTGAACCTGTTTAATTAGGTAGATCATTTATATTGATGCTTAGACTGC
GAAAGGTTTTATTGGTCGAAACATTAGTTCCAAAAGTGACGACTTAAGTA
CCACAGCGACCGTAGTACAGTGGTAGAGCATCCGGCTACGGTTCGCAAGG
TTGTGTGTTCAACCCCCAGCCGGGTCATACCAAAGATTCCCAAAATGGTA
CTTGATACCTCTCTGCTTGATGCTCAGCAATTAAGAGAAGGATCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045622XLOC_045622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073508-exon-scaffold_93-1575043694:179955..180502TCONS_00073508-exon-scaffold_93-1575043694:179955..180502Clytia hemisphaericaexon
TCONS_00073508-exon-scaffold_93-1510915933:179955..180502TCONS_00073508-exon-scaffold_93-1510915933:179955..180502Clytia hemisphaericaexon
TCONS_00073508-exon-scaffold_93-1491911889:179955..180502TCONS_00073508-exon-scaffold_93-1491911889:179955..180502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:179955..180502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.429849	0.0680689	2.26117	2.04653	0.731509	1.25672	0.167085	0.993273	1.03891	2.13856	0.600499	1.87635	1.37963	0.871849	1.07671	1.27275	1.91328	1.38372	2.37445	1.40472	0.929964	0	0.677817	1.1796	0.935833	0.616338	0.407494	1.75088	0.423066	1.55911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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