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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073499 ID=TCONS_00073499|Name=TCONS_00073499|organism=Clytia hemisphaerica|type=transcript|length=634bp
aaaacaactttattACCTAAGGAAACgcagctaaaaaacagATATCAGAA
GATTGAGAGAAGAAAAGAATCGCAACCAATTGCCAGCTGAGTTTTTGGTC
AAAGTTCAAATTCAAAGGCAAATAATTCAATTATGACATCTTCAATCTTA
CGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGCAACAAGACA
GATCACAGGAGCCAACAATACATCATCAATCAACTCACCAGCTGCAATTC
TCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTTCATGGAACG
AACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGCTGGCCATGT
CCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGACAATCAAGTG
CAGTTGATATAGAATTCACTCATGATACTGAATCACAACAACAGCAAACA
GAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATTTCGGAGCAC
AATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGCTTCTAATAA
GAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTTGGACTTTTT
GGAACATTCTTTCACGTGAATAGCACAATTCGAA Run BLAST on NCBI transcript from alignment at scaffold_93:13224..15561- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073499 ID=TCONS_00073499|Name=TCONS_00073499|organism=Clytia hemisphaerica|type=transcript|length=2338bp|location=Sequence derived from alignment at scaffold_93:13224..15561- (Clytia hemisphaerica)
AAAACAACTTTATTACCTAAGGAAACGCAGCTAAAAAACAGGTTTGTTTA
TACCTCCAGGGACAAAACAGTGTAGAGCAACAAAATAATGCACATGTATC
TGTTTTGCTAATTACGGGAAAGGTGTATTTCCAAACTTTTCTAGGGGGGT
CAAATCTTACATTTTCCAGAGGAATTTTGTTCATTTTTCAGGTTTTCCAA
GGGGGGTATATTGCCAGACGATCTCAATCGAACGCAATCGACGATCGAAC
CAATCGAACAAAATCGAACGCAATCGACCGATTGAAATTCGATTGTCGAA
TGCAATCGAATCTCAATCGAACGTCAAAATTCTGGGTAATATTCGATTGG
TTCGATTGTTGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGAATTTCAATCG
GTCGATTGCGTTTGATTTGGTTCGACTGATTCGATCGTTGATTCCGTTCG
ATTGAGATCGTCTGGATATTGAAGTTTCCTAGCATTTTCAGAACACTCTC
TCCTCATAGAATGACATCAATAACAATACGTAACTTGGTCTAATGTCAAC
ATCCCTCTTCTAATCCCGACACCCTTCTTTAGAGATAAGAATGGTAGAAA
GGTCGGAATCGCTTAAAAAAAAAGGAAACTATACTTCTTTGCTTAGCGAC
TAGAGAAAAAAATCTTTCGTCTATCAGTCATTCTGACCTTACTATTAATC
CTATCTTTATAACTGGGTGTCAGAATTAGAAGAGGGATGTCGACATTAAA
CCAACTTAGGGTTTATATATATAGTTGTTTTTCCATTGAAAAAATGGAGT
TATCGTGATTGATTGACTGGAGTTTTTAATTATCTGTTAAAAGGTCTATT
GAGGTTAAAGTACATTTTCAATTCTCCATTTTTGGTTTATTATATTTTGG
TTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGATGGGGGG
GGGGGGGGGGAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
GGGGGGGGGTTGGAATAAAAATAAATGTCCTGGGTGGAAATTTTTTGAAA
ATGAGGCTAATACACCAGAATTGGGACAAAAAAGGAACTTTCAAAAACAT
TTTCTCCAAAATTAATAAGTGTAGGGGTTGGAATAAGAATGTCCTGGGTG
GAAAATTTTCAAAAAATTAATTAGCGGGGGGGGCACGGCTATTAGGTACC
CAAGAGTATATCTTTAACTATAGATCAAGTGGTTTAACCAAATTTAAACG
TCCTTGTAGATATCAGAAGATTGAGAGAAGAAAAGAATCGCAACCAATTG
CCAGCTGAGTTTTTGGTCAAAGTTCAAATTCAAAGGCAAATAATTCAATT
ATGACATCTTCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAAC
AGAAACTGCAACAAGACAGATCACAGGAGCCAACAATACATCATCAATCA
ACTCACCAGCTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACAT
TTTCCTTTTCATGGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCG
ACATATTGCTGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACC
ATTCAAGACAATCAAGTGCAGTTGATATAGAATTCACTCATGATACTGAA
TCACAACAACAGCAAACAGAGAATAATGAAAATAACCAAAGTGATAATGG
CATGGAATTTCGGAGCACAATCACTTGGGTTGAACGGGCATTACCATTCA
TTTTGCTGCTTCTAATAAGAGTATTATGGGATCACAGACTAGGTAACAAT
TTTGAAACTTTGTAATGCACTGATGGCACCTGCCTTTTGGCTTTGAATTC
TAAAACTTTTTAATCATTGTGTTATCAAGTTCATTGTTCATATCTAGTTG
ATCAAATTCAAAAAATAACTCAAACTTTTTATTAAATATCGAAAACATTT
GTTTGAAGACTTCAAGACTTTGAAAACCTTCCAAACTTCTTTTCATTAGT
CATCATCATGTATTAAGTTTTCATGTAAATTAAAGCAAGAATTTGAGCAA
AGTTTGATATTATTTATTCATTTTGTAGGAATAATTGTGTTTGTTGGACT
TTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073499-exon-scaffold_93-1575043694:15521..15561 | TCONS_00073499-exon-scaffold_93-1575043694:15521..15561 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1575043694:13570..14102 | TCONS_00073499-exon-scaffold_93-1575043694:13570..14102 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1575043694:13224..13283 | TCONS_00073499-exon-scaffold_93-1575043694:13224..13283 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1510915933:15521..15561 | TCONS_00073499-exon-scaffold_93-1510915933:15521..15561 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1510915933:13570..14102 | TCONS_00073499-exon-scaffold_93-1510915933:13570..14102 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1510915933:13224..13283 | TCONS_00073499-exon-scaffold_93-1510915933:13224..13283 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1491911889:15521..15561 | TCONS_00073499-exon-scaffold_93-1491911889:15521..15561 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1491911889:13570..14102 | TCONS_00073499-exon-scaffold_93-1491911889:13570..14102 | Clytia hemisphaerica | exon |
| TCONS_00073499-exon-scaffold_93-1491911889:13224..13283 | TCONS_00073499-exon-scaffold_93-1491911889:13224..13283 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_93 | supercontig | scaffold_93:13224..15561 - |
Blast
The following BLAST results are available for this feature:
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