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TCONS_00073499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073499
Unique NameTCONS_00073499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073499 ID=TCONS_00073499|Name=TCONS_00073499|organism=Clytia hemisphaerica|type=transcript|length=634bp
aaaacaactttattACCTAAGGAAACgcagctaaaaaacagATATCAGAA
GATTGAGAGAAGAAAAGAATCGCAACCAATTGCCAGCTGAGTTTTTGGTC
AAAGTTCAAATTCAAAGGCAAATAATTCAATTATGACATCTTCAATCTTA
CGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGCAACAAGACA
GATCACAGGAGCCAACAATACATCATCAATCAACTCACCAGCTGCAATTC
TCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTTCATGGAACG
AACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGCTGGCCATGT
CCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGACAATCAAGTG
CAGTTGATATAGAATTCACTCATGATACTGAATCACAACAACAGCAAACA
GAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATTTCGGAGCAC
AATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGCTTCTAATAA
GAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTTGGACTTTTT
GGAACATTCTTTCACGTGAATAGCACAATTCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_93:13224..15561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073499 ID=TCONS_00073499|Name=TCONS_00073499|organism=Clytia hemisphaerica|type=transcript|length=2338bp|location=Sequence derived from alignment at scaffold_93:13224..15561- (Clytia hemisphaerica)
AAAACAACTTTATTACCTAAGGAAACGCAGCTAAAAAACAGGTTTGTTTA TACCTCCAGGGACAAAACAGTGTAGAGCAACAAAATAATGCACATGTATC TGTTTTGCTAATTACGGGAAAGGTGTATTTCCAAACTTTTCTAGGGGGGT CAAATCTTACATTTTCCAGAGGAATTTTGTTCATTTTTCAGGTTTTCCAA GGGGGGTATATTGCCAGACGATCTCAATCGAACGCAATCGACGATCGAAC CAATCGAACAAAATCGAACGCAATCGACCGATTGAAATTCGATTGTCGAA TGCAATCGAATCTCAATCGAACGTCAAAATTCTGGGTAATATTCGATTGG TTCGATTGTTGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGAATTTCAATCG GTCGATTGCGTTTGATTTGGTTCGACTGATTCGATCGTTGATTCCGTTCG ATTGAGATCGTCTGGATATTGAAGTTTCCTAGCATTTTCAGAACACTCTC TCCTCATAGAATGACATCAATAACAATACGTAACTTGGTCTAATGTCAAC ATCCCTCTTCTAATCCCGACACCCTTCTTTAGAGATAAGAATGGTAGAAA GGTCGGAATCGCTTAAAAAAAAAGGAAACTATACTTCTTTGCTTAGCGAC TAGAGAAAAAAATCTTTCGTCTATCAGTCATTCTGACCTTACTATTAATC CTATCTTTATAACTGGGTGTCAGAATTAGAAGAGGGATGTCGACATTAAA CCAACTTAGGGTTTATATATATAGTTGTTTTTCCATTGAAAAAATGGAGT TATCGTGATTGATTGACTGGAGTTTTTAATTATCTGTTAAAAGGTCTATT GAGGTTAAAGTACATTTTCAATTCTCCATTTTTGGTTTATTATATTTTGG TTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGATGGGGGG GGGGGGGGGGAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG GGGGGGGGGTTGGAATAAAAATAAATGTCCTGGGTGGAAATTTTTTGAAA ATGAGGCTAATACACCAGAATTGGGACAAAAAAGGAACTTTCAAAAACAT TTTCTCCAAAATTAATAAGTGTAGGGGTTGGAATAAGAATGTCCTGGGTG GAAAATTTTCAAAAAATTAATTAGCGGGGGGGGCACGGCTATTAGGTACC CAAGAGTATATCTTTAACTATAGATCAAGTGGTTTAACCAAATTTAAACG TCCTTGTAGATATCAGAAGATTGAGAGAAGAAAAGAATCGCAACCAATTG CCAGCTGAGTTTTTGGTCAAAGTTCAAATTCAAAGGCAAATAATTCAATT ATGACATCTTCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAAC AGAAACTGCAACAAGACAGATCACAGGAGCCAACAATACATCATCAATCA ACTCACCAGCTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACAT TTTCCTTTTCATGGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCG ACATATTGCTGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACC ATTCAAGACAATCAAGTGCAGTTGATATAGAATTCACTCATGATACTGAA TCACAACAACAGCAAACAGAGAATAATGAAAATAACCAAAGTGATAATGG CATGGAATTTCGGAGCACAATCACTTGGGTTGAACGGGCATTACCATTCA TTTTGCTGCTTCTAATAAGAGTATTATGGGATCACAGACTAGGTAACAAT TTTGAAACTTTGTAATGCACTGATGGCACCTGCCTTTTGGCTTTGAATTC TAAAACTTTTTAATCATTGTGTTATCAAGTTCATTGTTCATATCTAGTTG ATCAAATTCAAAAAATAACTCAAACTTTTTATTAAATATCGAAAACATTT GTTTGAAGACTTCAAGACTTTGAAAACCTTCCAAACTTCTTTTCATTAGT CATCATCATGTATTAAGTTTTCATGTAAATTAAAGCAAGAATTTGAGCAA AGTTTGATATTATTTATTCATTTTGTAGGAATAATTGTGTTTGTTGGACT TTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045619XLOC_045619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073499-exon-scaffold_93-1575043694:15521..15561TCONS_00073499-exon-scaffold_93-1575043694:15521..15561Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1575043694:13570..14102TCONS_00073499-exon-scaffold_93-1575043694:13570..14102Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1575043694:13224..13283TCONS_00073499-exon-scaffold_93-1575043694:13224..13283Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1510915933:15521..15561TCONS_00073499-exon-scaffold_93-1510915933:15521..15561Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1510915933:13570..14102TCONS_00073499-exon-scaffold_93-1510915933:13570..14102Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1510915933:13224..13283TCONS_00073499-exon-scaffold_93-1510915933:13224..13283Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1491911889:15521..15561TCONS_00073499-exon-scaffold_93-1491911889:15521..15561Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1491911889:13570..14102TCONS_00073499-exon-scaffold_93-1491911889:13570..14102Clytia hemisphaericaexon
TCONS_00073499-exon-scaffold_93-1491911889:13224..13283TCONS_00073499-exon-scaffold_93-1491911889:13224..13283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:13224..15561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.8172 16.4518 4.00501 6.21787 5.53161 6.02972 7.55177 5.32424 4.44656 6.35077 5.19898 3.52194 7.37311 5.91739 4.59741 4.55148 2.57911 3.85888 5.69292 6.04564 3.21941 1.87306 9.12809 11.4144 10.1142 9.99394 3.11225 3.66087 6.90848 6.15789
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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