TCONS_00073498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073498
Unique NameTCONS_00073498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073498 ID=TCONS_00073498|Name=TCONS_00073498|organism=Clytia hemisphaerica|type=transcript|length=2163bp
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG
AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA
ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT
GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA
GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA
TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA
AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCgataaaa
aaaaccaaaaaaaaaaccaacaGACCAAAAGTTTTACAGTTTTACAGATA
TCAGAAGATTGAGAGAAGAAAAGAATCGCAACCAATTGCCAGCTGAGTTT
TTGGTCAAAGTTCAAATTCAAAGGCAAATAATTCAATTATGACATCTTCA
ATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGCAAC
AAGACAGATCACAGGAGCCAACAATACATCATCAATCAACTCACCAGCTG
CAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTTCAT
GGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGCTGG
CCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGACAAT
CAAGTGCAGTTGATATAGAATTCACTCATGATACTGAATCACAACAACAG
CAAACAGAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATTTCG
GAGCACAATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGCTTC
TAATAAGAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTTGGA
CTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNatgtagt
tcgagtgtcgtgggatacaccatggctcggcagctcgcatctgcagggtt
gcaatgtctgcttgcgctgtgattcctactccaccgtgtgtaggacccat
tccgatgcatcagagggcatatctatctatctatctattttatATTGCGA
TTCAACTAATGCATGTATtatagaaaactttttttcaagatATCTTGAAG
ATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTTCT
CATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAATG
GATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAAcagACTTTGTTGTTCG
ATTTGTTACCATGGCAATCAAGTGTTTTATCATTATAACTCCCAGAAGGA
TGATCAGCTTCAAGAAAAGGGGAAAGCAATTTCTAGTTATCGAAAATATT
TCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTACAATTACTT
CATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTCTCTTCTCCA
CAATCGGTTATTTCTTATTAAAAGTTCGAATGTTGTTTTTGAAGTTGAAA
GAGATTTTGCATGCTTTCATCAACTACTGCAAAGATACTAGATATGGTCG
AGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGCGACTCGTGTCCAATTT
GCCAAGAAGAAATGTCAGATCCAGTTGAACTCACTCTTTGCAAGCATATA
TTTTGTGAAGATTGTATTGGTATATGGTTTGACCGCGAGCGGACGTGTCC
AATGTGTCGCGCGAAGATCGCTGAAGATCCACAATGGAGAGATGGGAATA
CACAAAGTTTCATACAATTCTTCTAAAAGGATTTTCGTGGAACTAACCAT
TTTATGAAGTCCTAACTTTAAAGAATCGTGTTTGCCGTGATTATCAATTG
GCGGGCTGAAAATCCTACCATCCTGCATAAAATTCTTCTACCTCAAGGAT
TATGGGGAAAATACAGCATTGTTTGAGACCATATTTTCTTTAATGTGGCG
AGAGATTCGGTATTTACCTCGAAACATGGAGATCGGCATCAGGGAGACAA
CCAGGATTGTGACGATTGTTTTCAAACTCAAAGGAGACAAAAATCTGTTA
ATTATGAGACNAA
Run BLAST on NCBI

protein sequence of TCONS_00073498-protein

>TCONS_00073498-protein ID=TCONS_00073498-protein|Name=TCONS_00073498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MTSSILRGAIQGIVQQTETATRQITGANNTSSINSPAAILSTSSNTEAQH
FPFHGTNSRHTSSSSVRHIAGHVRSRSDASSRHHSRQSSAVDIEFTHDTE
SQQQQTENNENNQSDNGMEFRSTITWVERALPFILLLLIRVLWDHRLGII
VFVGLFGTFFHVNSTIRKXVVRVSWDTPWLGSSHLQGCNVCLRCDSYSTV
CRTHSDASEGISIYLSILYCDSTNACIIENFFSRYLEDFKYWLNLGETFR
HITSHLDITA
Run BLAST on NCBI

transcript from alignment at scaffold_93:9283..19165-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073498 ID=TCONS_00073498|Name=TCONS_00073498|organism=Clytia hemisphaerica|type=transcript|length=9883bp|location=Sequence derived from alignment at scaffold_93:9283..19165- (Clytia hemisphaerica)
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG
AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA
ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT
GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA
GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA
TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA
AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCGATAAAA
AAAACCAAAAAAAAAACCAACAGACCAAAAGTTTTACAGTTTTACAGGTA
TATTCAAAGTGTTTTCTAACCTTGATATCTACTTATAACTTTTAAGGTAT
TTTTCTGGTGTTATTTTATATCTTACAGTGTTGTAGGGACTATACAAAAT
GCTAGCCATTCCATTTTTTTAGTTAGATCTGTCTTTTATCTTTTTTGTCT
TGACAATAACAAATAATGTTTGTTACATAATTCAAATCATTTTTCAGTTT
GATGATTGAACATTGATATTGAGTGAGATAATTCTTGTTTCTGAGACTTC
TCTTTTTAGATTCTTCTATCGTTTTTACAAATTTTTAATCATGACAGCAT
GAGGCGGTATAATCACAAATATCTTCATTTCGCGTCCTCGGTGGATCTAA
AAAGTCGTCGGGCGACGCAAAACGAAGATATTTGTGATTGCCGCCTGATT
TTAAAAACTGCAATTTTTGCGCTTTTAGGGTATAAGAAATGGGCTATTCC
ACTTTTAAATTTAACCATACAGGGTAGACGGAAAACATAAAAGACAAACC
TCCAAAATGTGATCGGCTATTGCTCATTCCGACATTTTAAATTTTCCGGG
GGTTTTGCTGTTTGGGATTGTTTAGGTCAATAATGACATGGCATGAGCGC
CAGGCAGGCAGCGCAGCAGGAGCTTTGAATCATGAAGAAGGGAAAACCAA
AAGGGCAAAAAGGCATAACTGAAACTTACACTGCATGTCATGTCCATACT
TCACTGGATACTTAATATGGTTTGCTCACTGGATGTGAACTCTTGAAATG
AATGAAATAGATAAAATGGCAGAACAGATGTGATAAAGCTAGTTTGTACT
CAAGACCACAGGTGCAAATATCGGATCTGCAAAACGGAGTTTTTTAAATC
GATGGCTCACGTGAGTANTGTATAAAATGTTATGAATTGCGTATTTTGGT
TGTGCGGCGATGGCTCAAGGGATAGAGCGCTGGCTTCCGGATCCGAAGGT
CTTTCTTTGGTGGTGGTTCGAATCCCACTCGGTGCGAAAATTAGACTGGT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAGAAATGAGAAACTAAGTCTCAGAAACTCA
GAAGCTCAGACAGTCAGAAAAGAGAAGGACGGGATCAGAGATAAGGATCA
CATTTCGGAGGTTTGTCTTTTATGCTTTCCAGGGTAGACAGGCAGCTGAG
GTCACAAAAAAATTGGACGGGGGGTGCGAACAATTCCAAACCACTTTTAA
TTGAAAATATACAACCTAAATATCTAGAAACCATCAACCGGAGTTGTTGA
AATTACTTACCGGACGTGTCCGGTAATATTTTAGTACCAGATGACGTCAT
GCGTGCCCATAGGCTTACTGAAAAAATTTTGAGAACCAACATAGACATAT
TATATACTGATCGAAGCGTTTTTTAACGTAGATTAAGAAAATGGTCAGAA
ACCATATCTGAAAATTTTGCTAGAAAAAGTTAGAACGCTTTTCCTTTATG
TCCGTAACGTCAATTTTACCTGTCCGAGACGAAAAAAAAATCAAAAATTC
AAACTTATCAAAATTGAAATCTAAGACCGCCATTCGAAAGCTCTCAAAAA
TCGATATAGAAGACTTTTAAATGGATATATATGATTTCTCAACCTAACTC
GAGAAAATCGATCCTAAAGAAAGTGTAAATATATGACGTCATCAAAACTT
TGTAAGCTTTTAACTTTTTATTATCAAATTTTCAGACATAGTTACTGCCC
TTTTTCTTAATCTACGTCAAAAAACGCGTCGATTGGTATATAATATGTCT
ATGCTTTTTTTCATAAAAATTTTCATTTTGCTTGTGACGTCATCAAATAC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCATCA
AATACGAAAATATTTTCGGACGCGTCCGGTAATTATTTTCAAACTGTCCG
GTTGATGATTTTGTGTTCAGAAAGGTCGTATCTATTGAAAACAAGTAGCT
ACTGCACTTTTTTATGTGACCTCAGCTGCCTGACTAGGGAGTATAAACCT
TTTTACCGTAATTCAAACTTCTCAGAAATTATCGAAAAATTTTACTCCAC
CCGTTGTGTTTATATAAAACTGTTTGGTAGTTAAGGTATGTGTACACCTT
TTTTCCGATTTTTTGTCAAAAAATTGTTCTTCAGTCAAAGTGGAAGAAAA
GTTACTGGATTTCATTTTGGTAAAATCACGATCTTAAAATCTTTTTTTGA
TCCAGAGTTATAACCATTTTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATGGATTATTTACTCAAATAATT
GTCTCTTTCGGAAACAACAAAGAGAAAAGAGAGAATTCAGCTGATGTTTA
TTCTCACATCTATTGAATAGTAACATATTTGACACATTTCTCTGATTACT
TAATTAAACAGTAATTATCTTGTCAAAAATTTCAAATTGATGTAGAAAAA
AATGAAATTTTACCATACCATACTACTTTTAACGAGGTTAAAGTCACCCA
TAGCATTTAGCTATGTCAGAACTTAATTTTTTTTTATATTTTCGGCTAAG
AATTGAACTAAAAAAATGTCTTAGGATTTTTTTTCTAATCGAGTTAAAGC
TTCACAATTTCAGGTTAAGTGGAAAAAAATCGAGAAATGAATGATTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAGATATGATCAATTAA
AGAGAATGTGTCAAGGAAGGTGAACACATACCTTAAAGGAACACGTTTTT
GCCTGTGTGAGGGTTTAGGGAAAGTGGATTTTCAGCTTCTAACTTTATTG
ATAGCGATCTCTTTTTGACAAAAAAATTTTCAGAGTGGTATAATGAAATT
TAAAAAAAACAACTAAAGTTTGAGAGGATTTTGTTTAGCAAATCTTGAGA
AAAAAAAACAACTTTATTACCTAAGGAAACGCAGCTAAAAAACAGGTTTG
TTTATACCTCCAGGGACAAAACAGTGTAGAGCAACAAAATAATGCACATG
TATCTGTTTTGCTAATTACGGGAAAGGTGTATTTCCAAACTTTTCTAGGG
GGGTCAAATCTTACATTTTCCAGAGGAATTTTGTTCATTTTTCAGGTTTT
CCAAGGGGGGTATATTGCCAGACGATCTCAATCGAACGCAATCGACGATC
GAACCAATCGAACAAAATCGAACGCAATCGACCGATTGAAATTCGATTGT
CGAATGCAATCGAATCTCAATCGAACGTCAAAATTCTGGGTAATATTCGA
TTGGTTCGATTGTTGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGAATTTCA
ATCGGTCGATTGCGTTTGATTTGGTTCGACTGATTCGATCGTTGATTCCG
TTCGATTGAGATCGTCTGGATATTGAAGTTTCCTAGCATTTTCAGAACAC
TCTCTCCTCATAGAATGACATCAATAACAATACGTAACTTGGTCTAATGT
CAACATCCCTCTTCTAATCCCGACACCCTTCTTTAGAGATAAGAATGGTA
GAAAGGTCGGAATCGCTTAAAAAAAAAGGAAACTATACTTCTTTGCTTAG
CGACTAGAGAAAAAAATCTTTCGTCTATCAGTCATTCTGACCTTACTATT
AATCCTATCTTTATAACTGGGTGTCAGAATTAGAAGAGGGATGTCGACAT
TAAACCAACTTAGGGTTTATATATATAGTTGTTTTTCCATTGAAAAAATG
GAGTTATCGTGATTGATTGACTGGAGTTTTTAATTATCTGTTAAAAGGTC
TATTGAGGTTAAAGTACATTTTCAATTCTCCATTTTTGGTTTATTATATT
TTGGTTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGATGG
GGGGGGGGGGGGGGAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGGGGGGGGGGTTGGAATAAAAATAAATGTCCTGGGTGGAAATTTTTT
GAAAATGAGGCTAATACACCAGAATTGGGACAAAAAAGGAACTTTCAAAA
ACATTTTCTCCAAAATTAATAAGTGTAGGGGTTGGAATAAGAATGTCCTG
GGTGGAAAATTTTCAAAAAATTAATTAGCGGGGGGGGCACGGCTATTAGG
TACCCAAGAGTATATCTTTAACTATAGATCAAGTGGTTTAACCAAATTTA
AACGTCCTTGTAGATATCAGAAGATTGAGAGAAGAAAAGAATCGCAACCA
ATTGCCAGCTGAGTTTTTGGTCAAAGTTCAAATTCAAAGGCAAATAATTC
AATTATGACATCTTCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAAC
AAACAGAAACTGCAACAAGACAGATCACAGGAGCCAACAATACATCATCA
ATCAACTCACCAGCTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCA
ACATTTTCCTTTTCATGGAACGAACAGTAGACACACAAGCTCAAGCAGTG
TTCGACATATTGCTGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGG
CACCATTCAAGACAATCAAGTGCAGTTGATATAGAATTCACTCATGATAC
TGAATCACAACAACAGCAAACAGAGAATAATGAAAATAACCAAAGTGATA
ATGGCATGGAATTTCGGAGCACAATCACTTGGGTTGAACGGGCATTACCA
TTCATTTTGCTGCTTCTAATAAGAGTATTATGGGATCACAGACTAGGTAA
CAATTTTGAAACTTTGTAATGCACTGATGGCACCTGCCTTTTGGCTTTGA
ATTCTAAAACTTTTTAATCATTGTGTTATCAAGTTCATTGTTCATATCTA
GTTGATCAAATTCAAAAAATAACTCAAACTTTTTATTAAATATCGAAAAC
ATTTGTTTGAAGACTTCAAGACTTTGAAAACCTTCCAAACTTCTTTTCAT
TAGTCATCATCATGTATTAAGTTTTCATGTAAATTAAAGCAAGAATTTGA
GCAAAGTTTGATATTATTTATTCATTTTGTAGGAATAATTGTGTTTGTTG
GACTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNATGTA
GTTCGAGTGTCGTGGGATACACCATGGCTCGGCAGCTCGCATCTGCAGGG
TTGCAATGTCTGCTTGCGCTGTGATTCCTACTCCACCGTGTGTAGGACCC
ATTCCGATGCATCAGAGGGCATATCTATCTATCTATCTATTTTATATTGC
GATTCAACTAATGCATGTATTATAGAAAACTTTTTTTCAAGATATCTTGA
AGATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTT
CTCATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAA
TGGATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAACAGGTAAAAAATAT
AAAAATATAGTAAAACAATCAAACTTAGAATTTTCATGACGTATGTAATT
AACTTTCCAAACGCTGTTAATGATGCTGATTAATATAGTTAATACATTTT
TTTTTTACCATAAGAATCAGTTAATTTTTGGAGAGGCTCGGCTGTTCTTA
GCACTTTGAGCCTCAAATTGTTCCTAATTAACTTTCTTATTTTATTTCCT
GTCTTATTTATAGGGTGAAATTGAAGTATTTTAAGATTTATGCCCAATTG
TGACCTCCAATTGTTTGAAATTGAGTAATTCCAAGCTCAGCCATGTTTTT
AAATTGTTCTCATTTTTTGGTGATTTTGAGCCTCGTTGTTCTTATAAAGG
AGAAAGTGTACTTATAATTAGGTTATTTAAAGAATTTGGAAATTTTTAAC
AACAGGTGTTCTGATTTAGACTTTGTTGTTCGATTTGTTACCATGGCAAT
CAAGTGTTTTATCATTATAACTCCCAGAAGGATGATCAGCTTCAAGAAAA
GGGTATGACGATAATACTTCTAACCAAGCCAATATACATAATAATGCTAA
ATATGCTTATTGTCAACATGAAAAATATGAGCAATCTGATTGGCTAGAAA
AGCGTACATAAATGTTGTATTTCATTTTGTACCGTATAATGCTAAATATG
CTCATTCAGTATAGTTTCAAACTAAACAAAATTGTTTGTTTGACATCACT
GCATACATATCACTATAACCTCTCTCAAAATACCTTATAATAGTCTATTC
CTAAATGCAATGTTTGTTCTTCCTTTTAGGGAAAGCAATTTCTAGTTATC
GAAAATATTTCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTA
CAATTACTTCATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTC
TCTTCTCCACAATCGGTTATTTCTTATTAAAAGTAAGTAGAACTAAAACG
AGAAACAATAGCATAGTTTCTAGAGGGGTCAAGACCCCCCCTTAGGTAAG
AGGACCCCCCCCTTAAGTGCTACCCCCCCCCCTTAGGAAATTCATTTAAA
ATTTCACACCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAATTTCATACCCTCCCTTAGAAAAT
CAGTATAAATGAAACGATTGTAAAATAGTCATAATTAGGTTAGACGATTC
TTATCTAAGAAGGCCCCCCCTTAACTGGCAACCCCCCCTTAGGAAAGTCA
TACTTTTAACACCCCCTTTTGCTTTTGGTTCATCAAAATCCAAGACCCCC
CTAAATGTAGGGGGGTAGAAACTATGCTGTAGTTTTATAAAACGTAAATT
AATACATACTTTTTCAAAAAAGTAATTGTGAGTGAATAATGTTTTGTTTG
AGAGTCTTGGTCTGTCTTGATAAAGAAAGAGAATTTTTCAAAGGCCTTTC
ATCAAATCTTCCTCGCGCTAAAATTACACTTTTTCAATCTCGTAGATTTA
ATATCTGGGTGAATGAGGTACCTAGCTTTCAGATTTAATTTTTCCTTATT
TGCCATTTTGTTTTAGGTTCGAATGTTGTTTTTGAAGTTGAAAGAGATTT
TGCATGCTTTCATCAACTACTGCAAAGATACTGTATGTAATGGGCTTATC
CAGAAAAAATTTGAATATTGAGGGTGGAGGATCTAACATTTTTTGAAAAT
TTACCCCCGGACACTTGACCCCCCGAACAGCAGGTCCAACATCCCGGACA
AACATCAGTGGACATTCAAAATTACCCTCAAACAAGTTTCCCCCCGGACA
AGGCAAATTTTGTAGATTTTTCACTACCCCCGAACACTATATCCTCCACC
CCCATGTACGAACATTTTCTGGAAGAGCCCAATTCTTAACCCTACCTTTC
ACTGGATACAGTTTTAACTCTTGCTTATTCGAACTTTCATCATCCGAATC
TTTCTACAATTCGAGTTATCCCCTGTCCCCGTCAAGGAGAATCCCTCTTT
ATATTATCTCTGTAATTCGAACAAATAATATTCACCGTTCGAGTTCGAAC
TAGCAAGAGTCAATTGTATTCATAAATACCGTTCATTGCGTAATTGTATA
TAGTAGCATTTCATGTTATTTGTGCTGCTCTAAACTTTAGAATAGGATTT
TTTTCTTGTCCTTTTTACTCGCTTTCATGAGTTTTAAATNGTGCTCTAAA
CTTTGGAATAGGATTTTTTTCTTGTCCTTTTTACTCACTTTCATGAGTTT
TAAATAATATTTCGGAGTCTTAAGTTTTCATTTGTTAAAACCACTTTGGA
AGATTCAACACAGATAGATCATTACGTATTTTAAGGAGGTACTTTCCATA
GGCGGTTTTAGAACATGTCGAACTTATCAGAGGAAGAGATTTGATATTGT
AATTTGATTGTCTTAAATCTATCAGTGCTTTTAGAACCAATATACTTTTG
TTTAGGTCATTTCTGTCTTTTAACACTGCAAACTTTTTTCATCTTTTGTA
ATCAGAGATATGGTCGAGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGC
GACTCGTGTCCAATTTGCCAAGAAGAAATGTCAGATCCAGTTGAACTCAC
TCTTTGCAAGGTACTAAATACACAGGTTGCAAAATTTACGTCTGAAGACA
AATCATGCTTTCACTCGAAATTTTTATGTGCTTGTTGCATGACATTTATT
TCTGATTGGTTCGAATTTATTGACACTAATAAAGTTATCAACTGTAAGTT
GTAAAGGAAGCAACATGAGAATAAGATCACGCGAACTCTTTCGAGTAATG
AGTCCTGATTGGATTTAAAGTCAATTGACAAAAAAGTATAATGAGCCACT
TGGGAAATTCTGAAATTCCGTGAATCCCCGCTGGATTTTTTTTATCTATA
AACCGTATTACTGTAAACTCATATCCAAATTATTTTTTCCCAAAAGGTTT
TCCCTCCTCATTGGCAATTTTAGTTTACTTCATACTAAACCAGTGTTCTA
CTCTACTGCGGTCTATTTTTGGCGAAGATCGGAAAGATGGAGTAGTTCAA
TCTACTGTTTTATATAAGATCTATGTGCAATTGCCCACAATCCACCACTC
TTTTCTCTTAACAGCATATATTTTGTGAAGATTGTATTGGTATATGGTTT
GACCGCGAGCGGACGTGTCCAATGTGTCGCGCGAAGATCGCTGAAGATCC
ACAATGGAGAGATGGGAATACACAAAGTTTCATACAATTCTTCTAAAAGG
ATTTTCGTGGAACTAACCATTTTATGAAGTCCTAACTTTAAAGAATCGTG
TTTGCCGTGATTATCAATTGGCGGGCTGAAAATCCTACCATCCTGCATAA
AATTCTTCTACCTCAAGGATTATGGGGAAAATACAGCATTGTTTGAGACC
ATATTTTCTTTAATGTGGCGAGAGATTCGGTATTTACCTCGAAACATGGA
GATCGGCATCAGGGAGACAACCAGGATTGTGACGATTGTTTTCAAACTCA
AAGGAGACAAAAATCTGTTAATTATGAGACNAA

Coding sequence (CDS) from alignment at scaffold_93:9283..19165-

>TCONS_00073498 ID=TCONS_00073498|Name=TCONS_00073498|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_93:9283..19165- (Clytia hemisphaerica)
GAATAATTGTGTTTGTTGGACTTTTTGGAACATTCTTTCACGTGAATAGC
ACAATTCGAAAGNATGTAGTTCGAGTGTCGTGGGATACACCATGGCTCGG
CAGCTCGCATCTGCAGGGTTGCAATGTCTGCTTGCGCTGTGATTCCTACT
CCACCGTGTGTAGGACCCATTCCGATGCATCAGAGGGCATATCTATCTAT
CTATCTATTTTATATTGCGATTCAACTAATGCATGTATTATAGAAAACTT
TTTTTCAAGATATCTTGAAGATTTTAAGTATTGGTTAAACTTGGGTGAGA
CCTTCAGACATATCACTTCTCATCTTGATATTACAGCTTGAATGACATCT
TCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGC
AACAAGACAGATCACAGGAGCCAACAATACATCATCAATCAACTCACCAG
CTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTT
CATGGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGC
TGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGAC
AATCAAGTGCAGTTGATATAGAATTCACTCATGATACTGAATCACAACAA
CAGCAAACAGAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATT
TCGGAGCACAATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGC
TTCTAATAAGAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTT
GGACTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNATGT
AGTTCGAGTGTCGTGGGATACACCATGGCTCGGCAGCTCGCATCTGCAGG
GTTGCAATGTCTGCTTGCGCTGTGATTCCTACTCCACCGTGTGTAGGACC
CATTCCGATGCATCAGAGGGCATATCTATCTATCTATCTATTTTATATTG
CGATTCAACTAATGCATGTATTATAGAAAACTTTTTTTCAAGATATCTTG
AAGATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACT
TCTCATCTTGATATTACAGCTTGAATGACATCTTCAATCTTACGAGGAGC
AATTCAAGGAATTGTTCAACAAACAGAAACTGCAACAAGACAGATCACAG
GAGCCAACAATACATCATCAATCAACTCACCAGCTGCAATTCTCAGCACT
TCCAGTAATACAGAAGCTCAACATTTTCCTTTTCATGGAACGAACAGTAG
ACACACAAGCTCAAGCAGTGTTCGACATATTGCTGGCCATGTCCGGTCAA
GAAGTGATGCAAGCAGTAGGCACCATTCAAGACAATCAAGTGCAGTTGAT
ATAGAATTCACTCATGATACTGAATCACAACAACAGCAAACAGAGAATAA
TGAAAATAACCAAAGTGATAATGGCATGGAATTTCGGAGCACAATCACTT
GGGTTGAACGGGCATTACCATTCATTTTGCTGCTTCTAATAAGAGTATTA
TGGGATCACAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045619XLOC_045619Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073498-proteinTCONS_00073498-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073498-exon-scaffold_93-1575043694:18769..19165TCONS_00073498-exon-scaffold_93-1575043694:18769..19165Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:13570..14102TCONS_00073498-exon-scaffold_93-1575043694:13570..14102Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:12877..13283TCONS_00073498-exon-scaffold_93-1575043694:12877..13283Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:12364..12446TCONS_00073498-exon-scaffold_93-1575043694:12364..12446Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:11934..12086TCONS_00073498-exon-scaffold_93-1575043694:11934..12086Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:11184..11249TCONS_00073498-exon-scaffold_93-1575043694:11184..11249Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:10206..10310TCONS_00073498-exon-scaffold_93-1575043694:10206..10310Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1575043694:9283..9701TCONS_00073498-exon-scaffold_93-1575043694:9283..9701Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:18769..19165TCONS_00073498-exon-scaffold_93-1510915933:18769..19165Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:13570..14102TCONS_00073498-exon-scaffold_93-1510915933:13570..14102Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:12877..13283TCONS_00073498-exon-scaffold_93-1510915933:12877..13283Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:12364..12446TCONS_00073498-exon-scaffold_93-1510915933:12364..12446Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:11934..12086TCONS_00073498-exon-scaffold_93-1510915933:11934..12086Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:11184..11249TCONS_00073498-exon-scaffold_93-1510915933:11184..11249Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:10206..10310TCONS_00073498-exon-scaffold_93-1510915933:10206..10310Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1510915933:9283..9701TCONS_00073498-exon-scaffold_93-1510915933:9283..9701Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:18769..19165TCONS_00073498-exon-scaffold_93-1491911889:18769..19165Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:13570..14102TCONS_00073498-exon-scaffold_93-1491911889:13570..14102Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:12877..13283TCONS_00073498-exon-scaffold_93-1491911889:12877..13283Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:12364..12446TCONS_00073498-exon-scaffold_93-1491911889:12364..12446Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:11934..12086TCONS_00073498-exon-scaffold_93-1491911889:11934..12086Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:11184..11249TCONS_00073498-exon-scaffold_93-1491911889:11184..11249Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:10206..10310TCONS_00073498-exon-scaffold_93-1491911889:10206..10310Clytia hemisphaericaexon
TCONS_00073498-exon-scaffold_93-1491911889:9283..9701TCONS_00073498-exon-scaffold_93-1491911889:9283..9701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:9283..19165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.0132	10.5052	5.45467	3.62544	3.66438	4.49126	5.03401	5.92682	3.87617	5.12564	6.58898	3.93122	4.46252	4.80552	2.57003	4.12428	2.44122	2.04893	2.18632	2.56378	2.34914	1.06161	7.50561	6.08321	8.0189	8.59186	2.57164	1.74384	3.37752	3.68172
Blast
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BLAST of TCONS_00073498 vs. Swiss-Prot (Human)
Match: RNFT1 (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 8.297e-43
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = 2 
Query: 1238 TYHFSS*YYSLMFLKPSIHTMDVWAVFWCVGITDFVVRFVTMAIKCFIIITPRRMISFKKRGKQFLVIENISQFYRMLLPVPVWYNYFMLSYDVLG-VDYFALFSTIGYFLLKVRM--LFLKLKEILHAFINYCKDTRYGRAPSKEVLLELGDSCPICQEEMSDPVELTLCKHIFCEDCIGIWFDRERTCPMCRAKIAED-PQWRDGNTQSFIQFF 1873
            T+H  S YYSL+FL P++  +  W VFW VGITDF+++F  M +KC I++ P  ++ FK +G  ++++E + Q+YR  +P+PVW+ Y ++SY   G V  ++L   +    L +++   F  L+        +     YG A SK    ++ D C ICQ E   P+ L +C+HIFCE+C+ +WF+RE+TCP+CR  I++   +W+DG T S +Q +
Sbjct:  222 TFHSQSLYYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRY-LISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQCSDVDDICSICQAEFQKPI-LLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGATSSHLQIY 435
The following BLAST results are available for this feature:
BLAST of TCONS_00073498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNFT18.297e-4337.96RING finger and transmembrane domain-containing pr... [more]
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