TCONS_00073497 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073497
Unique Name	TCONS_00073497
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2710

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_93:8119..19165-

transcript sequence

>TCONS_00073497 ID=TCONS_00073497|Name=TCONS_00073497|organism=Clytia hemisphaerica|type=transcript|length=2710bp
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG
AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA
ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT
GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA
GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA
TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA
AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCgataaaa
aaaaccaaaaaaaaaaccaacaGACCAAAAGTTTTACAGTTTTACAGATA
TCAGAAGATTGAGAGAAGAAAAGAATCGCAACCAATTGCCAGCTGAGTTT
TTGGTCAAAGTTCAAATTCAAAGGCAAATAATTCAATTATGACATCTTCA
ATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGCAAC
AAGACAGATCACAGGAGCCAACAATACATCATCAATCAACTCACCAGCTG
CAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTTCAT
GGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGCTGG
CCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGACAAT
CAAGTGCAGTTGATATAGAATTCACTCATGATACTGAATCACAACAACAG
CAAACAGAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATTTCG
GAGCACAATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGCTTC
TAATAAGAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTTGGA
CTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNatgtagt
tcgagtgtcgtgggatacaccatggctcggcagctcgcatctgcagggtt
gcaatgtctgcttgcgctgtgattcctactccaccgtgtgtaggacccat
tccgatgcatcagagggcatatctatctatctatctattttatATTGCGA
TTCAACTAATGCATGTATtatagaaaactttttttcaagatATCTTGAAG
ATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTTCT
CATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAATG
GATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAAcagACTTTGTTGTTCG
ATTTGTTACCATGGCAATCAAGTGTTTTATCATTATAACTCCCAGAAGGA
TGATCAGCTTCAAGAAAAGGGGAAAGCAATTTCTAGTTATCGAAAATATT
TCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTACAATTACTT
CATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTCTCTTCTCCA
CAATCGGTTATTTCTTATTAAAAGTTCGAATGTTGTTTTTGAAGTTGAAA
GAGATTTTGCATGCTTTCATCAACTACTGCAAAGATACTAGATATGGTCG
AGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGCGACTCGTGTCCAATTT
GCCAAGAAGAAATGTCAGATCCAGTTGAACTCACTCTTTGCAAGCATATA
TTTTGTGAAGATTGTATTGGTATATGGTTTGACCGCGAGCGGACGTGTCC
AATGTGTCGCGCGAAGATCGCTGAAGATCCACAATGGAGAGATGGGAATA
CACAAAGTTTCATACAATTCTTCTAAAAGGATTTTCGTGGAACTAACCAT
TTTATGAAGTCCTAACTTTAAAGAATCGTGTTTGCCGTGATTATCAATTG
GCGGGCTGAAAATTCTACCATCCTGCATAAAATTCTTCTACCTCAAGGAT
TATGGGGAAAATACAGCATTGTTTGAGACCATATTTTCTTTAATGTGGCG
AGAGATTCGGTATTTACCTCGAAACATGGAGATCGGCATCAGGGAGACAA
CCATGATTGTGACGATTGTTTTCAAACTCAAAGGAGACAAAAATCTGTTA
ATTATGAGACGGCAacattaatttgaaaatttttcggcACTTTTTTTCTA
ccatatttttatttataaaagaaTCGATTTGGACGGATTGAGGGAGAATT
CAATGAACATGCAAATTGAGATTAATGTTTGGAATGGATGGATGAGATCT
GTTGCTGGGAGAGAATTTGGAAACTAATTTGGCGCTGGTTTTTTATCCAC
TTCATTCAATTTTTGTatagattttttaaatgcaaGATTCACCTAATAGT
AATACAAGATGTTattacctctggcgatataacgttagttcctagcgggg
gagggactatatttcacagatctgtaaagcccgaagggctagatccgCCG
CCtatatcgaaaagtgaagcaagttttggtaggatttcctaccaaagaaa
tcacgtgacaacaagcaatttcactgatttgagagatgcgaaatggCGTT
TGCCGCCCACTatttttatctcgcgctccgaaaacaattaaaatgctaga
tcctatccatcggaacgaaatttaaaaagtttttttttctggagaaagct
taaaattgcc

Run BLAST on NCBI

transcript from alignment at scaffold_93:8119..19165-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073497 ID=TCONS_00073497|Name=TCONS_00073497|organism=Clytia hemisphaerica|type=transcript|length=11047bp|location=Sequence derived from alignment at scaffold_93:8119..19165- (Clytia hemisphaerica)
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG
AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA
ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT
GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA
GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA
TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA
AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCGATAAAA
AAAACCAAAAAAAAAACCAACAGACCAAAAGTTTTACAGTTTTACAGGTA
TATTCAAAGTGTTTTCTAACCTTGATATCTACTTATAACTTTTAAGGTAT
TTTTCTGGTGTTATTTTATATCTTACAGTGTTGTAGGGACTATACAAAAT
GCTAGCCATTCCATTTTTTTAGTTAGATCTGTCTTTTATCTTTTTTGTCT
TGACAATAACAAATAATGTTTGTTACATAATTCAAATCATTTTTCAGTTT
GATGATTGAACATTGATATTGAGTGAGATAATTCTTGTTTCTGAGACTTC
TCTTTTTAGATTCTTCTATCGTTTTTACAAATTTTTAATCATGACAGCAT
GAGGCGGTATAATCACAAATATCTTCATTTCGCGTCCTCGGTGGATCTAA
AAAGTCGTCGGGCGACGCAAAACGAAGATATTTGTGATTGCCGCCTGATT
TTAAAAACTGCAATTTTTGCGCTTTTAGGGTATAAGAAATGGGCTATTCC
ACTTTTAAATTTAACCATACAGGGTAGACGGAAAACATAAAAGACAAACC
TCCAAAATGTGATCGGCTATTGCTCATTCCGACATTTTAAATTTTCCGGG
GGTTTTGCTGTTTGGGATTGTTTAGGTCAATAATGACATGGCATGAGCGC
CAGGCAGGCAGCGCAGCAGGAGCTTTGAATCATGAAGAAGGGAAAACCAA
AAGGGCAAAAAGGCATAACTGAAACTTACACTGCATGTCATGTCCATACT
TCACTGGATACTTAATATGGTTTGCTCACTGGATGTGAACTCTTGAAATG
AATGAAATAGATAAAATGGCAGAACAGATGTGATAAAGCTAGTTTGTACT
CAAGACCACAGGTGCAAATATCGGATCTGCAAAACGGAGTTTTTTAAATC
GATGGCTCACGTGAGTANTGTATAAAATGTTATGAATTGCGTATTTTGGT
TGTGCGGCGATGGCTCAAGGGATAGAGCGCTGGCTTCCGGATCCGAAGGT
CTTTCTTTGGTGGTGGTTCGAATCCCACTCGGTGCGAAAATTAGACTGGT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAGAAATGAGAAACTAAGTCTCAGAAACTCA
GAAGCTCAGACAGTCAGAAAAGAGAAGGACGGGATCAGAGATAAGGATCA
CATTTCGGAGGTTTGTCTTTTATGCTTTCCAGGGTAGACAGGCAGCTGAG
GTCACAAAAAAATTGGACGGGGGGTGCGAACAATTCCAAACCACTTTTAA
TTGAAAATATACAACCTAAATATCTAGAAACCATCAACCGGAGTTGTTGA
AATTACTTACCGGACGTGTCCGGTAATATTTTAGTACCAGATGACGTCAT
GCGTGCCCATAGGCTTACTGAAAAAATTTTGAGAACCAACATAGACATAT
TATATACTGATCGAAGCGTTTTTTAACGTAGATTAAGAAAATGGTCAGAA
ACCATATCTGAAAATTTTGCTAGAAAAAGTTAGAACGCTTTTCCTTTATG
TCCGTAACGTCAATTTTACCTGTCCGAGACGAAAAAAAAATCAAAAATTC
AAACTTATCAAAATTGAAATCTAAGACCGCCATTCGAAAGCTCTCAAAAA
TCGATATAGAAGACTTTTAAATGGATATATATGATTTCTCAACCTAACTC
GAGAAAATCGATCCTAAAGAAAGTGTAAATATATGACGTCATCAAAACTT
TGTAAGCTTTTAACTTTTTATTATCAAATTTTCAGACATAGTTACTGCCC
TTTTTCTTAATCTACGTCAAAAAACGCGTCGATTGGTATATAATATGTCT
ATGCTTTTTTTCATAAAAATTTTCATTTTGCTTGTGACGTCATCAAATAC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCATCA
AATACGAAAATATTTTCGGACGCGTCCGGTAATTATTTTCAAACTGTCCG
GTTGATGATTTTGTGTTCAGAAAGGTCGTATCTATTGAAAACAAGTAGCT
ACTGCACTTTTTTATGTGACCTCAGCTGCCTGACTAGGGAGTATAAACCT
TTTTACCGTAATTCAAACTTCTCAGAAATTATCGAAAAATTTTACTCCAC
CCGTTGTGTTTATATAAAACTGTTTGGTAGTTAAGGTATGTGTACACCTT
TTTTCCGATTTTTTGTCAAAAAATTGTTCTTCAGTCAAAGTGGAAGAAAA
GTTACTGGATTTCATTTTGGTAAAATCACGATCTTAAAATCTTTTTTTGA
TCCAGAGTTATAACCATTTTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATGGATTATTTACTCAAATAATT
GTCTCTTTCGGAAACAACAAAGAGAAAAGAGAGAATTCAGCTGATGTTTA
TTCTCACATCTATTGAATAGTAACATATTTGACACATTTCTCTGATTACT
TAATTAAACAGTAATTATCTTGTCAAAAATTTCAAATTGATGTAGAAAAA
AATGAAATTTTACCATACCATACTACTTTTAACGAGGTTAAAGTCACCCA
TAGCATTTAGCTATGTCAGAACTTAATTTTTTTTTATATTTTCGGCTAAG
AATTGAACTAAAAAAATGTCTTAGGATTTTTTTTCTAATCGAGTTAAAGC
TTCACAATTTCAGGTTAAGTGGAAAAAAATCGAGAAATGAATGATTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAGATATGATCAATTAA
AGAGAATGTGTCAAGGAAGGTGAACACATACCTTAAAGGAACACGTTTTT
GCCTGTGTGAGGGTTTAGGGAAAGTGGATTTTCAGCTTCTAACTTTATTG
ATAGCGATCTCTTTTTGACAAAAAAATTTTCAGAGTGGTATAATGAAATT
TAAAAAAAACAACTAAAGTTTGAGAGGATTTTGTTTAGCAAATCTTGAGA
AAAAAAAACAACTTTATTACCTAAGGAAACGCAGCTAAAAAACAGGTTTG
TTTATACCTCCAGGGACAAAACAGTGTAGAGCAACAAAATAATGCACATG
TATCTGTTTTGCTAATTACGGGAAAGGTGTATTTCCAAACTTTTCTAGGG
GGGTCAAATCTTACATTTTCCAGAGGAATTTTGTTCATTTTTCAGGTTTT
CCAAGGGGGGTATATTGCCAGACGATCTCAATCGAACGCAATCGACGATC
GAACCAATCGAACAAAATCGAACGCAATCGACCGATTGAAATTCGATTGT
CGAATGCAATCGAATCTCAATCGAACGTCAAAATTCTGGGTAATATTCGA
TTGGTTCGATTGTTGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGAATTTCA
ATCGGTCGATTGCGTTTGATTTGGTTCGACTGATTCGATCGTTGATTCCG
TTCGATTGAGATCGTCTGGATATTGAAGTTTCCTAGCATTTTCAGAACAC
TCTCTCCTCATAGAATGACATCAATAACAATACGTAACTTGGTCTAATGT
CAACATCCCTCTTCTAATCCCGACACCCTTCTTTAGAGATAAGAATGGTA
GAAAGGTCGGAATCGCTTAAAAAAAAAGGAAACTATACTTCTTTGCTTAG
CGACTAGAGAAAAAAATCTTTCGTCTATCAGTCATTCTGACCTTACTATT
AATCCTATCTTTATAACTGGGTGTCAGAATTAGAAGAGGGATGTCGACAT
TAAACCAACTTAGGGTTTATATATATAGTTGTTTTTCCATTGAAAAAATG
GAGTTATCGTGATTGATTGACTGGAGTTTTTAATTATCTGTTAAAAGGTC
TATTGAGGTTAAAGTACATTTTCAATTCTCCATTTTTGGTTTATTATATT
TTGGTTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGATGG
GGGGGGGGGGGGGGAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGGGGGGGGGGTTGGAATAAAAATAAATGTCCTGGGTGGAAATTTTTT
GAAAATGAGGCTAATACACCAGAATTGGGACAAAAAAGGAACTTTCAAAA
ACATTTTCTCCAAAATTAATAAGTGTAGGGGTTGGAATAAGAATGTCCTG
GGTGGAAAATTTTCAAAAAATTAATTAGCGGGGGGGGCACGGCTATTAGG
TACCCAAGAGTATATCTTTAACTATAGATCAAGTGGTTTAACCAAATTTA
AACGTCCTTGTAGATATCAGAAGATTGAGAGAAGAAAAGAATCGCAACCA
ATTGCCAGCTGAGTTTTTGGTCAAAGTTCAAATTCAAAGGCAAATAATTC
AATTATGACATCTTCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAAC
AAACAGAAACTGCAACAAGACAGATCACAGGAGCCAACAATACATCATCA
ATCAACTCACCAGCTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCA
ACATTTTCCTTTTCATGGAACGAACAGTAGACACACAAGCTCAAGCAGTG
TTCGACATATTGCTGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGG
CACCATTCAAGACAATCAAGTGCAGTTGATATAGAATTCACTCATGATAC
TGAATCACAACAACAGCAAACAGAGAATAATGAAAATAACCAAAGTGATA
ATGGCATGGAATTTCGGAGCACAATCACTTGGGTTGAACGGGCATTACCA
TTCATTTTGCTGCTTCTAATAAGAGTATTATGGGATCACAGACTAGGTAA
CAATTTTGAAACTTTGTAATGCACTGATGGCACCTGCCTTTTGGCTTTGA
ATTCTAAAACTTTTTAATCATTGTGTTATCAAGTTCATTGTTCATATCTA
GTTGATCAAATTCAAAAAATAACTCAAACTTTTTATTAAATATCGAAAAC
ATTTGTTTGAAGACTTCAAGACTTTGAAAACCTTCCAAACTTCTTTTCAT
TAGTCATCATCATGTATTAAGTTTTCATGTAAATTAAAGCAAGAATTTGA
GCAAAGTTTGATATTATTTATTCATTTTGTAGGAATAATTGTGTTTGTTG
GACTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNATGTA
GTTCGAGTGTCGTGGGATACACCATGGCTCGGCAGCTCGCATCTGCAGGG
TTGCAATGTCTGCTTGCGCTGTGATTCCTACTCCACCGTGTGTAGGACCC
ATTCCGATGCATCAGAGGGCATATCTATCTATCTATCTATTTTATATTGC
GATTCAACTAATGCATGTATTATAGAAAACTTTTTTTCAAGATATCTTGA
AGATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTT
CTCATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAA
TGGATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAACAGGTAAAAAATAT
AAAAATATAGTAAAACAATCAAACTTAGAATTTTCATGACGTATGTAATT
AACTTTCCAAACGCTGTTAATGATGCTGATTAATATAGTTAATACATTTT
TTTTTTACCATAAGAATCAGTTAATTTTTGGAGAGGCTCGGCTGTTCTTA
GCACTTTGAGCCTCAAATTGTTCCTAATTAACTTTCTTATTTTATTTCCT
GTCTTATTTATAGGGTGAAATTGAAGTATTTTAAGATTTATGCCCAATTG
TGACCTCCAATTGTTTGAAATTGAGTAATTCCAAGCTCAGCCATGTTTTT
AAATTGTTCTCATTTTTTGGTGATTTTGAGCCTCGTTGTTCTTATAAAGG
AGAAAGTGTACTTATAATTAGGTTATTTAAAGAATTTGGAAATTTTTAAC
AACAGGTGTTCTGATTTAGACTTTGTTGTTCGATTTGTTACCATGGCAAT
CAAGTGTTTTATCATTATAACTCCCAGAAGGATGATCAGCTTCAAGAAAA
GGGTATGACGATAATACTTCTAACCAAGCCAATATACATAATAATGCTAA
ATATGCTTATTGTCAACATGAAAAATATGAGCAATCTGATTGGCTAGAAA
AGCGTACATAAATGTTGTATTTCATTTTGTACCGTATAATGCTAAATATG
CTCATTCAGTATAGTTTCAAACTAAACAAAATTGTTTGTTTGACATCACT
GCATACATATCACTATAACCTCTCTCAAAATACCTTATAATAGTCTATTC
CTAAATGCAATGTTTGTTCTTCCTTTTAGGGAAAGCAATTTCTAGTTATC
GAAAATATTTCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTA
CAATTACTTCATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTC
TCTTCTCCACAATCGGTTATTTCTTATTAAAAGTAAGTAGAACTAAAACG
AGAAACAATAGCATAGTTTCTAGAGGGGTCAAGACCCCCCCTTAGGTAAG
AGGACCCCCCCCTTAAGTGCTACCCCCCCCCCTTAGGAAATTCATTTAAA
ATTTCACACCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAATTTCATACCCTCCCTTAGAAAAT
CAGTATAAATGAAACGATTGTAAAATAGTCATAATTAGGTTAGACGATTC
TTATCTAAGAAGGCCCCCCCTTAACTGGCAACCCCCCCTTAGGAAAGTCA
TACTTTTAACACCCCCTTTTGCTTTTGGTTCATCAAAATCCAAGACCCCC
CTAAATGTAGGGGGGTAGAAACTATGCTGTAGTTTTATAAAACGTAAATT
AATACATACTTTTTCAAAAAAGTAATTGTGAGTGAATAATGTTTTGTTTG
AGAGTCTTGGTCTGTCTTGATAAAGAAAGAGAATTTTTCAAAGGCCTTTC
ATCAAATCTTCCTCGCGCTAAAATTACACTTTTTCAATCTCGTAGATTTA
ATATCTGGGTGAATGAGGTACCTAGCTTTCAGATTTAATTTTTCCTTATT
TGCCATTTTGTTTTAGGTTCGAATGTTGTTTTTGAAGTTGAAAGAGATTT
TGCATGCTTTCATCAACTACTGCAAAGATACTGTATGTAATGGGCTTATC
CAGAAAAAATTTGAATATTGAGGGTGGAGGATCTAACATTTTTTGAAAAT
TTACCCCCGGACACTTGACCCCCCGAACAGCAGGTCCAACATCCCGGACA
AACATCAGTGGACATTCAAAATTACCCTCAAACAAGTTTCCCCCCGGACA
AGGCAAATTTTGTAGATTTTTCACTACCCCCGAACACTATATCCTCCACC
CCCATGTACGAACATTTTCTGGAAGAGCCCAATTCTTAACCCTACCTTTC
ACTGGATACAGTTTTAACTCTTGCTTATTCGAACTTTCATCATCCGAATC
TTTCTACAATTCGAGTTATCCCCTGTCCCCGTCAAGGAGAATCCCTCTTT
ATATTATCTCTGTAATTCGAACAAATAATATTCACCGTTCGAGTTCGAAC
TAGCAAGAGTCAATTGTATTCATAAATACCGTTCATTGCGTAATTGTATA
TAGTAGCATTTCATGTTATTTGTGCTGCTCTAAACTTTAGAATAGGATTT
TTTTCTTGTCCTTTTTACTCGCTTTCATGAGTTTTAAATNGTGCTCTAAA
CTTTGGAATAGGATTTTTTTCTTGTCCTTTTTACTCACTTTCATGAGTTT
TAAATAATATTTCGGAGTCTTAAGTTTTCATTTGTTAAAACCACTTTGGA
AGATTCAACACAGATAGATCATTACGTATTTTAAGGAGGTACTTTCCATA
GGCGGTTTTAGAACATGTCGAACTTATCAGAGGAAGAGATTTGATATTGT
AATTTGATTGTCTTAAATCTATCAGTGCTTTTAGAACCAATATACTTTTG
TTTAGGTCATTTCTGTCTTTTAACACTGCAAACTTTTTTCATCTTTTGTA
ATCAGAGATATGGTCGAGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGC
GACTCGTGTCCAATTTGCCAAGAAGAAATGTCAGATCCAGTTGAACTCAC
TCTTTGCAAGGTACTAAATACACAGGTTGCAAAATTTACGTCTGAAGACA
AATCATGCTTTCACTCGAAATTTTTATGTGCTTGTTGCATGACATTTATT
TCTGATTGGTTCGAATTTATTGACACTAATAAAGTTATCAACTGTAAGTT
GTAAAGGAAGCAACATGAGAATAAGATCACGCGAACTCTTTCGAGTAATG
AGTCCTGATTGGATTTAAAGTCAATTGACAAAAAAGTATAATGAGCCACT
TGGGAAATTCTGAAATTCCGTGAATCCCCGCTGGATTTTTTTTATCTATA
AACCGTATTACTGTAAACTCATATCCAAATTATTTTTTCCCAAAAGGTTT
TCCCTCCTCATTGGCAATTTTAGTTTACTTCATACTAAACCAGTGTTCTA
CTCTACTGCGGTCTATTTTTGGCGAAGATCGGAAAGATGGAGTAGTTCAA
TCTACTGTTTTATATAAGATCTATGTGCAATTGCCCACAATCCACCACTC
TTTTCTCTTAACAGCATATATTTTGTGAAGATTGTATTGGTATATGGTTT
GACCGCGAGCGGACGTGTCCAATGTGTCGCGCGAAGATCGCTGAAGATCC
ACAATGGAGAGATGGGAATACACAAAGTTTCATACAATTCTTCTAAAAGG
ATTTTCGTGGAACTAACCATTTTATGAAGTCCTAACTTTAAAGAATCGTG
TTTGCCGTGATTATCAATTGGCGGGCTGAAAATCCTACCATCCTGCATAA
AATTCTTCTACCTCAAGGATTATGGGGAAAATACAGCATTGTTTGAGACC
ATATTTTCTTTAATGTGGCGAGAGATTCGGTATTTACCTCGAAACATGGA
GATCGGCATCAGGGAGACAACCAGGATTGTGACGATTGTTTTCAAACTCA
AAGGAGACAAAAATCTGTTAATTATGAGACNAAACTCATATCCAAATTAT
TTTTTCCCAAAAGGTTTTCCCTCCTCATTGGCAATTTTAGTTTACTTCAT
ACTAAACCAGTGTTCTACTCTACTGCGGTCTATTTTTGGCGAAGATCGGA
AAGATGGAGTAGTTCAATCTACTGTTTTATATAAGATCTATGTGCAATTG
CCCACAATCCACCACTCTTTTCTCTTAACAGCATATATTTTGTGAAGATT
GTATTGGTATATGGTTTGACCGCGAGCGGACGTGTCCAATGTGTCGCGCG
AAGATCGCTGAAGATCCACAATGGAGAGATGGGAATACACAAAGTTTCAT
ACAATTCTTCTAAAAGGATTTTCGTGGAACTAACCATTTTATGAAGTCCT
AACTTTAAAGAATCGTGTTTGCCGTGATTATCAATTGGCGGGCTGAAAAT
TCTACCATCCTGCATAAAATTCTTCTACCTCAAGGATTATGGGGAAAATA
CAGCATTGTTTGAGACCATATTTTCTTTAATGTGGCGAGAGATTCGGTAT
TTACCTCGAAACATGGAGATCGGCATCAGGGAGACAACCATGATTGTGAC
GATTGTTTTCAAACTCAAAGGAGACAAAAATCTGTTAATTATGAGACGGC
AACATTAATTTGAAAATTTTTCGGCACTTTTTTTCTACCATATTTTTATT
TATAAAAGAATCGATTTGGACGGATTGAGGGAGAATTCAATGAACATGCA
AATTGAGATTAATGTTTGGAATGGATGGATGAGATCTGTTGCTGGGAGAG
AATTTGGAAACTAATTTGGCGCTGGTTTTTTATCCACTTCATTCAATTTT
TGTATAGATTTTTTAAATGCAAGATTCACCTAATAGTAATACAAGATGTT
ATTACCTCTGGCGATATAACGTTAGTTCCTAGCGGGGGAGGGACTATATT
TCACAGATCTGTAAAGCCCGAAGGGCTAGATCCGCCGCCTATATCGAAAA
GTGAAGCAAGTTTTGGTAGGATTTCCTACCAAAGAAATCACGTGACAACA
AGCAATTTCACTGATTTGAGAGATGCGAAATGGCGTTTGCCGCCCACTAT
TTTTATCTCGCGCTCCGAAAACAATTAAAATGCTAGATCCTATCCATCGG
AACGAAATTTAAAAAGTTTTTTTTTCTGGAGAAAGCTTAAAATTGCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045619	XLOC_045619	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_93	supercontig	scaffold_93:8119..19165 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.0385	11.7383	7.08079	6.24649	2.06136	1.3103	2.97603	3.61915	2.43998	2.48212	3.18153	2.05362	2.65457	1.96139	2.83418	4.04138	1.81025	2.89177	2.59184	3.36925	2.50248	3.6791	8.34744	8.08539	2.30156	3.01115	3.81659	3.02424	6.48419	7.03322

Blast

[Close]

BLAST of TCONS_00073497 vs. Swiss-Prot (Human)
Match: RNFT1 (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-42
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = 2

Query: 1238 TYHFSS*YYSLMFLKPSIHTMDVWAVFWCVGITDFVVRFVTMAIKCFIIITPRRMISFKKRGKQFLVIENISQFYRMLLPVPVWYNYFMLSYDVLG-VDYFALFSTIGYFLLKVRM--LFLKLKEILHAFINYCKDTRYGRAPSKEVLLELGDSCPICQEEMSDPVELTLCKHIFCEDCIGIWFDRERTCPMCRAKIAED-PQWRDGNTQSFIQFF 1873
            T+H  S YYSL+FL P++  +  W VFW VGITDF+++F  M +KC I++ P  ++ FK +G  ++++E + Q+YR  +P+PVW+ Y ++SY   G V  ++L   +    L +++   F  L+        +     YG A SK    ++ D C ICQ E   P+ L +C+HIFCE+C+ +WF+RE+TCP+CR  I++   +W+DG T S +Q +
Sbjct:  222 TFHSQSLYYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRY-LISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQCSDVDDICSICQAEFQKPI-LLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGATSSHLQIY 435

The following BLAST results are available for this feature:

BLAST of TCONS_00073497 vs. Swiss-Prot (Human)

BLAST of TCONS_00073497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
RNFT1	3.597e-42	37.96	RING finger and transmembrane domain-containing pr...	[more]

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TCONS_00073497 (transcript) - C. hemisphaerica

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