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TCONS_00073497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073497
Unique NameTCONS_00073497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073497 ID=TCONS_00073497|Name=TCONS_00073497|organism=Clytia hemisphaerica|type=transcript|length=2710bp
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG
AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA
ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT
GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA
GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA
TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA
AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCgataaaa
aaaaccaaaaaaaaaaccaacaGACCAAAAGTTTTACAGTTTTACAGATA
TCAGAAGATTGAGAGAAGAAAAGAATCGCAACCAATTGCCAGCTGAGTTT
TTGGTCAAAGTTCAAATTCAAAGGCAAATAATTCAATTATGACATCTTCA
ATCTTACGAGGAGCAATTCAAGGAATTGTTCAACAAACAGAAACTGCAAC
AAGACAGATCACAGGAGCCAACAATACATCATCAATCAACTCACCAGCTG
CAATTCTCAGCACTTCCAGTAATACAGAAGCTCAACATTTTCCTTTTCAT
GGAACGAACAGTAGACACACAAGCTCAAGCAGTGTTCGACATATTGCTGG
CCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGGCACCATTCAAGACAAT
CAAGTGCAGTTGATATAGAATTCACTCATGATACTGAATCACAACAACAG
CAAACAGAGAATAATGAAAATAACCAAAGTGATAATGGCATGGAATTTCG
GAGCACAATCACTTGGGTTGAACGGGCATTACCATTCATTTTGCTGCTTC
TAATAAGAGTATTATGGGATCACAGACTAGGAATAATTGTGTTTGTTGGA
CTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNatgtagt
tcgagtgtcgtgggatacaccatggctcggcagctcgcatctgcagggtt
gcaatgtctgcttgcgctgtgattcctactccaccgtgtgtaggacccat
tccgatgcatcagagggcatatctatctatctatctattttatATTGCGA
TTCAACTAATGCATGTATtatagaaaactttttttcaagatATCTTGAAG
ATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTTCT
CATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAATG
GATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAAcagACTTTGTTGTTCG
ATTTGTTACCATGGCAATCAAGTGTTTTATCATTATAACTCCCAGAAGGA
TGATCAGCTTCAAGAAAAGGGGAAAGCAATTTCTAGTTATCGAAAATATT
TCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTACAATTACTT
CATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTCTCTTCTCCA
CAATCGGTTATTTCTTATTAAAAGTTCGAATGTTGTTTTTGAAGTTGAAA
GAGATTTTGCATGCTTTCATCAACTACTGCAAAGATACTAGATATGGTCG
AGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGCGACTCGTGTCCAATTT
GCCAAGAAGAAATGTCAGATCCAGTTGAACTCACTCTTTGCAAGCATATA
TTTTGTGAAGATTGTATTGGTATATGGTTTGACCGCGAGCGGACGTGTCC
AATGTGTCGCGCGAAGATCGCTGAAGATCCACAATGGAGAGATGGGAATA
CACAAAGTTTCATACAATTCTTCTAAAAGGATTTTCGTGGAACTAACCAT
TTTATGAAGTCCTAACTTTAAAGAATCGTGTTTGCCGTGATTATCAATTG
GCGGGCTGAAAATTCTACCATCCTGCATAAAATTCTTCTACCTCAAGGAT
TATGGGGAAAATACAGCATTGTTTGAGACCATATTTTCTTTAATGTGGCG
AGAGATTCGGTATTTACCTCGAAACATGGAGATCGGCATCAGGGAGACAA
CCATGATTGTGACGATTGTTTTCAAACTCAAAGGAGACAAAAATCTGTTA
ATTATGAGACGGCAacattaatttgaaaatttttcggcACTTTTTTTCTA
ccatatttttatttataaaagaaTCGATTTGGACGGATTGAGGGAGAATT
CAATGAACATGCAAATTGAGATTAATGTTTGGAATGGATGGATGAGATCT
GTTGCTGGGAGAGAATTTGGAAACTAATTTGGCGCTGGTTTTTTATCCAC
TTCATTCAATTTTTGTatagattttttaaatgcaaGATTCACCTAATAGT
AATACAAGATGTTattacctctggcgatataacgttagttcctagcgggg
gagggactatatttcacagatctgtaaagcccgaagggctagatccgCCG
CCtatatcgaaaagtgaagcaagttttggtaggatttcctaccaaagaaa
tcacgtgacaacaagcaatttcactgatttgagagatgcgaaatggCGTT
TGCCGCCCACTatttttatctcgcgctccgaaaacaattaaaatgctaga
tcctatccatcggaacgaaatttaaaaagtttttttttctggagaaagct
taaaattgcc
Run BLAST on NCBI

transcript from alignment at scaffold_93:8119..19165-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073497 ID=TCONS_00073497|Name=TCONS_00073497|organism=Clytia hemisphaerica|type=transcript|length=11047bp|location=Sequence derived from alignment at scaffold_93:8119..19165- (Clytia hemisphaerica)
CCTTATTCTGAGATAGCTGGAAAATCAATATGATTAGAACGATAACAAAG AATAAAAGCAGAGTCCATCTCTTCCAAAATCCACGAAGAATCATCCCCAA ATTGCTTTTTGTCTTCCTGTGGTTTTCCAGTTAGGAATTTCCGCCATATT GTTTACATGTGAAATTATAAGGCGCCATCTCAGCTATAACAGTTTTTTCA GTTCTCGGAATTCCTGTGAAGCATTTTGATTGGCCTATCAAAACGTAATA TTACGTAATGCTAATATTTTAAAGATATGGCGCCTCAGAATAATTTGGAA AGTCCAAACAGCCAGTGCCGTACTGTCAGAAAGAAGCAGAACCGATAAAA AAAACCAAAAAAAAAACCAACAGACCAAAAGTTTTACAGTTTTACAGGTA TATTCAAAGTGTTTTCTAACCTTGATATCTACTTATAACTTTTAAGGTAT TTTTCTGGTGTTATTTTATATCTTACAGTGTTGTAGGGACTATACAAAAT GCTAGCCATTCCATTTTTTTAGTTAGATCTGTCTTTTATCTTTTTTGTCT TGACAATAACAAATAATGTTTGTTACATAATTCAAATCATTTTTCAGTTT GATGATTGAACATTGATATTGAGTGAGATAATTCTTGTTTCTGAGACTTC TCTTTTTAGATTCTTCTATCGTTTTTACAAATTTTTAATCATGACAGCAT GAGGCGGTATAATCACAAATATCTTCATTTCGCGTCCTCGGTGGATCTAA AAAGTCGTCGGGCGACGCAAAACGAAGATATTTGTGATTGCCGCCTGATT TTAAAAACTGCAATTTTTGCGCTTTTAGGGTATAAGAAATGGGCTATTCC ACTTTTAAATTTAACCATACAGGGTAGACGGAAAACATAAAAGACAAACC TCCAAAATGTGATCGGCTATTGCTCATTCCGACATTTTAAATTTTCCGGG GGTTTTGCTGTTTGGGATTGTTTAGGTCAATAATGACATGGCATGAGCGC CAGGCAGGCAGCGCAGCAGGAGCTTTGAATCATGAAGAAGGGAAAACCAA AAGGGCAAAAAGGCATAACTGAAACTTACACTGCATGTCATGTCCATACT TCACTGGATACTTAATATGGTTTGCTCACTGGATGTGAACTCTTGAAATG AATGAAATAGATAAAATGGCAGAACAGATGTGATAAAGCTAGTTTGTACT CAAGACCACAGGTGCAAATATCGGATCTGCAAAACGGAGTTTTTTAAATC GATGGCTCACGTGAGTANTGTATAAAATGTTATGAATTGCGTATTTTGGT TGTGCGGCGATGGCTCAAGGGATAGAGCGCTGGCTTCCGGATCCGAAGGT CTTTCTTTGGTGGTGGTTCGAATCCCACTCGGTGCGAAAATTAGACTGGT CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCAGAAATGAGAAACTAAGTCTCAGAAACTCA GAAGCTCAGACAGTCAGAAAAGAGAAGGACGGGATCAGAGATAAGGATCA CATTTCGGAGGTTTGTCTTTTATGCTTTCCAGGGTAGACAGGCAGCTGAG GTCACAAAAAAATTGGACGGGGGGTGCGAACAATTCCAAACCACTTTTAA TTGAAAATATACAACCTAAATATCTAGAAACCATCAACCGGAGTTGTTGA AATTACTTACCGGACGTGTCCGGTAATATTTTAGTACCAGATGACGTCAT GCGTGCCCATAGGCTTACTGAAAAAATTTTGAGAACCAACATAGACATAT TATATACTGATCGAAGCGTTTTTTAACGTAGATTAAGAAAATGGTCAGAA ACCATATCTGAAAATTTTGCTAGAAAAAGTTAGAACGCTTTTCCTTTATG TCCGTAACGTCAATTTTACCTGTCCGAGACGAAAAAAAAATCAAAAATTC AAACTTATCAAAATTGAAATCTAAGACCGCCATTCGAAAGCTCTCAAAAA TCGATATAGAAGACTTTTAAATGGATATATATGATTTCTCAACCTAACTC GAGAAAATCGATCCTAAAGAAAGTGTAAATATATGACGTCATCAAAACTT TGTAAGCTTTTAACTTTTTATTATCAAATTTTCAGACATAGTTACTGCCC TTTTTCTTAATCTACGTCAAAAAACGCGTCGATTGGTATATAATATGTCT ATGCTTTTTTTCATAAAAATTTTCATTTTGCTTGTGACGTCATCAAATAC GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCATCA AATACGAAAATATTTTCGGACGCGTCCGGTAATTATTTTCAAACTGTCCG GTTGATGATTTTGTGTTCAGAAAGGTCGTATCTATTGAAAACAAGTAGCT ACTGCACTTTTTTATGTGACCTCAGCTGCCTGACTAGGGAGTATAAACCT TTTTACCGTAATTCAAACTTCTCAGAAATTATCGAAAAATTTTACTCCAC CCGTTGTGTTTATATAAAACTGTTTGGTAGTTAAGGTATGTGTACACCTT TTTTCCGATTTTTTGTCAAAAAATTGTTCTTCAGTCAAAGTGGAAGAAAA GTTACTGGATTTCATTTTGGTAAAATCACGATCTTAAAATCTTTTTTTGA TCCAGAGTTATAACCATTTTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNATGGATTATTTACTCAAATAATT GTCTCTTTCGGAAACAACAAAGAGAAAAGAGAGAATTCAGCTGATGTTTA TTCTCACATCTATTGAATAGTAACATATTTGACACATTTCTCTGATTACT TAATTAAACAGTAATTATCTTGTCAAAAATTTCAAATTGATGTAGAAAAA AATGAAATTTTACCATACCATACTACTTTTAACGAGGTTAAAGTCACCCA TAGCATTTAGCTATGTCAGAACTTAATTTTTTTTTATATTTTCGGCTAAG AATTGAACTAAAAAAATGTCTTAGGATTTTTTTTCTAATCGAGTTAAAGC TTCACAATTTCAGGTTAAGTGGAAAAAAATCGAGAAATGAATGATTTTTT NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAGATATGATCAATTAA AGAGAATGTGTCAAGGAAGGTGAACACATACCTTAAAGGAACACGTTTTT GCCTGTGTGAGGGTTTAGGGAAAGTGGATTTTCAGCTTCTAACTTTATTG ATAGCGATCTCTTTTTGACAAAAAAATTTTCAGAGTGGTATAATGAAATT TAAAAAAAACAACTAAAGTTTGAGAGGATTTTGTTTAGCAAATCTTGAGA AAAAAAAACAACTTTATTACCTAAGGAAACGCAGCTAAAAAACAGGTTTG TTTATACCTCCAGGGACAAAACAGTGTAGAGCAACAAAATAATGCACATG TATCTGTTTTGCTAATTACGGGAAAGGTGTATTTCCAAACTTTTCTAGGG GGGTCAAATCTTACATTTTCCAGAGGAATTTTGTTCATTTTTCAGGTTTT CCAAGGGGGGTATATTGCCAGACGATCTCAATCGAACGCAATCGACGATC GAACCAATCGAACAAAATCGAACGCAATCGACCGATTGAAATTCGATTGT CGAATGCAATCGAATCTCAATCGAACGTCAAAATTCTGGGTAATATTCGA TTGGTTCGATTGTTGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGAATTTCA ATCGGTCGATTGCGTTTGATTTGGTTCGACTGATTCGATCGTTGATTCCG TTCGATTGAGATCGTCTGGATATTGAAGTTTCCTAGCATTTTCAGAACAC TCTCTCCTCATAGAATGACATCAATAACAATACGTAACTTGGTCTAATGT CAACATCCCTCTTCTAATCCCGACACCCTTCTTTAGAGATAAGAATGGTA GAAAGGTCGGAATCGCTTAAAAAAAAAGGAAACTATACTTCTTTGCTTAG CGACTAGAGAAAAAAATCTTTCGTCTATCAGTCATTCTGACCTTACTATT AATCCTATCTTTATAACTGGGTGTCAGAATTAGAAGAGGGATGTCGACAT TAAACCAACTTAGGGTTTATATATATAGTTGTTTTTCCATTGAAAAAATG GAGTTATCGTGATTGATTGACTGGAGTTTTTAATTATCTGTTAAAAGGTC TATTGAGGTTAAAGTACATTTTCAATTCTCCATTTTTGGTTTATTATATT TTGGTTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGATGG GGGGGGGGGGGGGGAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNGGGGGGGGGGGTTGGAATAAAAATAAATGTCCTGGGTGGAAATTTTTT GAAAATGAGGCTAATACACCAGAATTGGGACAAAAAAGGAACTTTCAAAA ACATTTTCTCCAAAATTAATAAGTGTAGGGGTTGGAATAAGAATGTCCTG GGTGGAAAATTTTCAAAAAATTAATTAGCGGGGGGGGCACGGCTATTAGG TACCCAAGAGTATATCTTTAACTATAGATCAAGTGGTTTAACCAAATTTA AACGTCCTTGTAGATATCAGAAGATTGAGAGAAGAAAAGAATCGCAACCA ATTGCCAGCTGAGTTTTTGGTCAAAGTTCAAATTCAAAGGCAAATAATTC AATTATGACATCTTCAATCTTACGAGGAGCAATTCAAGGAATTGTTCAAC AAACAGAAACTGCAACAAGACAGATCACAGGAGCCAACAATACATCATCA ATCAACTCACCAGCTGCAATTCTCAGCACTTCCAGTAATACAGAAGCTCA ACATTTTCCTTTTCATGGAACGAACAGTAGACACACAAGCTCAAGCAGTG TTCGACATATTGCTGGCCATGTCCGGTCAAGAAGTGATGCAAGCAGTAGG CACCATTCAAGACAATCAAGTGCAGTTGATATAGAATTCACTCATGATAC TGAATCACAACAACAGCAAACAGAGAATAATGAAAATAACCAAAGTGATA ATGGCATGGAATTTCGGAGCACAATCACTTGGGTTGAACGGGCATTACCA TTCATTTTGCTGCTTCTAATAAGAGTATTATGGGATCACAGACTAGGTAA CAATTTTGAAACTTTGTAATGCACTGATGGCACCTGCCTTTTGGCTTTGA ATTCTAAAACTTTTTAATCATTGTGTTATCAAGTTCATTGTTCATATCTA GTTGATCAAATTCAAAAAATAACTCAAACTTTTTATTAAATATCGAAAAC ATTTGTTTGAAGACTTCAAGACTTTGAAAACCTTCCAAACTTCTTTTCAT TAGTCATCATCATGTATTAAGTTTTCATGTAAATTAAAGCAAGAATTTGA GCAAAGTTTGATATTATTTATTCATTTTGTAGGAATAATTGTGTTTGTTG GACTTTTTGGAACATTCTTTCACGTGAATAGCACAATTCGAAAGNATGTA GTTCGAGTGTCGTGGGATACACCATGGCTCGGCAGCTCGCATCTGCAGGG TTGCAATGTCTGCTTGCGCTGTGATTCCTACTCCACCGTGTGTAGGACCC ATTCCGATGCATCAGAGGGCATATCTATCTATCTATCTATTTTATATTGC GATTCAACTAATGCATGTATTATAGAAAACTTTTTTTCAAGATATCTTGA AGATTTTAAGTATTGGTTAAACTTGGGTGAGACCTTCAGACATATCACTT CTCATCTTGATATTACAGCTTGATGTTCCTCAAACCATCGATACATACAA TGGATGTGTGGGCTGTGTTTTGGTGTGTCGGAATAACAGGTAAAAAATAT AAAAATATAGTAAAACAATCAAACTTAGAATTTTCATGACGTATGTAATT AACTTTCCAAACGCTGTTAATGATGCTGATTAATATAGTTAATACATTTT TTTTTTACCATAAGAATCAGTTAATTTTTGGAGAGGCTCGGCTGTTCTTA GCACTTTGAGCCTCAAATTGTTCCTAATTAACTTTCTTATTTTATTTCCT GTCTTATTTATAGGGTGAAATTGAAGTATTTTAAGATTTATGCCCAATTG TGACCTCCAATTGTTTGAAATTGAGTAATTCCAAGCTCAGCCATGTTTTT AAATTGTTCTCATTTTTTGGTGATTTTGAGCCTCGTTGTTCTTATAAAGG AGAAAGTGTACTTATAATTAGGTTATTTAAAGAATTTGGAAATTTTTAAC AACAGGTGTTCTGATTTAGACTTTGTTGTTCGATTTGTTACCATGGCAAT CAAGTGTTTTATCATTATAACTCCCAGAAGGATGATCAGCTTCAAGAAAA GGGTATGACGATAATACTTCTAACCAAGCCAATATACATAATAATGCTAA ATATGCTTATTGTCAACATGAAAAATATGAGCAATCTGATTGGCTAGAAA AGCGTACATAAATGTTGTATTTCATTTTGTACCGTATAATGCTAAATATG CTCATTCAGTATAGTTTCAAACTAAACAAAATTGTTTGTTTGACATCACT GCATACATATCACTATAACCTCTCTCAAAATACCTTATAATAGTCTATTC CTAAATGCAATGTTTGTTCTTCCTTTTAGGGAAAGCAATTTCTAGTTATC GAAAATATTTCACAGTTTTATCGGATGCTTTTGCCGGTTCCTGTATGGTA CAATTACTTCATGTTATCATACGATGTACTTGGTGTAGATTATTTCGCTC TCTTCTCCACAATCGGTTATTTCTTATTAAAAGTAAGTAGAACTAAAACG AGAAACAATAGCATAGTTTCTAGAGGGGTCAAGACCCCCCCTTAGGTAAG AGGACCCCCCCCTTAAGTGCTACCCCCCCCCCTTAGGAAATTCATTTAAA ATTTCACACCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNAAAATTTCATACCCTCCCTTAGAAAAT CAGTATAAATGAAACGATTGTAAAATAGTCATAATTAGGTTAGACGATTC TTATCTAAGAAGGCCCCCCCTTAACTGGCAACCCCCCCTTAGGAAAGTCA TACTTTTAACACCCCCTTTTGCTTTTGGTTCATCAAAATCCAAGACCCCC CTAAATGTAGGGGGGTAGAAACTATGCTGTAGTTTTATAAAACGTAAATT AATACATACTTTTTCAAAAAAGTAATTGTGAGTGAATAATGTTTTGTTTG AGAGTCTTGGTCTGTCTTGATAAAGAAAGAGAATTTTTCAAAGGCCTTTC ATCAAATCTTCCTCGCGCTAAAATTACACTTTTTCAATCTCGTAGATTTA ATATCTGGGTGAATGAGGTACCTAGCTTTCAGATTTAATTTTTCCTTATT TGCCATTTTGTTTTAGGTTCGAATGTTGTTTTTGAAGTTGAAAGAGATTT TGCATGCTTTCATCAACTACTGCAAAGATACTGTATGTAATGGGCTTATC CAGAAAAAATTTGAATATTGAGGGTGGAGGATCTAACATTTTTTGAAAAT TTACCCCCGGACACTTGACCCCCCGAACAGCAGGTCCAACATCCCGGACA AACATCAGTGGACATTCAAAATTACCCTCAAACAAGTTTCCCCCCGGACA AGGCAAATTTTGTAGATTTTTCACTACCCCCGAACACTATATCCTCCACC CCCATGTACGAACATTTTCTGGAAGAGCCCAATTCTTAACCCTACCTTTC ACTGGATACAGTTTTAACTCTTGCTTATTCGAACTTTCATCATCCGAATC TTTCTACAATTCGAGTTATCCCCTGTCCCCGTCAAGGAGAATCCCTCTTT ATATTATCTCTGTAATTCGAACAAATAATATTCACCGTTCGAGTTCGAAC TAGCAAGAGTCAATTGTATTCATAAATACCGTTCATTGCGTAATTGTATA TAGTAGCATTTCATGTTATTTGTGCTGCTCTAAACTTTAGAATAGGATTT TTTTCTTGTCCTTTTTACTCGCTTTCATGAGTTTTAAATNGTGCTCTAAA CTTTGGAATAGGATTTTTTTCTTGTCCTTTTTACTCACTTTCATGAGTTT TAAATAATATTTCGGAGTCTTAAGTTTTCATTTGTTAAAACCACTTTGGA AGATTCAACACAGATAGATCATTACGTATTTTAAGGAGGTACTTTCCATA GGCGGTTTTAGAACATGTCGAACTTATCAGAGGAAGAGATTTGATATTGT AATTTGATTGTCTTAAATCTATCAGTGCTTTTAGAACCAATATACTTTTG TTTAGGTCATTTCTGTCTTTTAACACTGCAAACTTTTTTCATCTTTTGTA ATCAGAGATATGGTCGAGCACCGTCGAAAGAGGTTTTGTTAGAACTGGGC GACTCGTGTCCAATTTGCCAAGAAGAAATGTCAGATCCAGTTGAACTCAC TCTTTGCAAGGTACTAAATACACAGGTTGCAAAATTTACGTCTGAAGACA AATCATGCTTTCACTCGAAATTTTTATGTGCTTGTTGCATGACATTTATT TCTGATTGGTTCGAATTTATTGACACTAATAAAGTTATCAACTGTAAGTT GTAAAGGAAGCAACATGAGAATAAGATCACGCGAACTCTTTCGAGTAATG AGTCCTGATTGGATTTAAAGTCAATTGACAAAAAAGTATAATGAGCCACT TGGGAAATTCTGAAATTCCGTGAATCCCCGCTGGATTTTTTTTATCTATA AACCGTATTACTGTAAACTCATATCCAAATTATTTTTTCCCAAAAGGTTT TCCCTCCTCATTGGCAATTTTAGTTTACTTCATACTAAACCAGTGTTCTA CTCTACTGCGGTCTATTTTTGGCGAAGATCGGAAAGATGGAGTAGTTCAA TCTACTGTTTTATATAAGATCTATGTGCAATTGCCCACAATCCACCACTC TTTTCTCTTAACAGCATATATTTTGTGAAGATTGTATTGGTATATGGTTT GACCGCGAGCGGACGTGTCCAATGTGTCGCGCGAAGATCGCTGAAGATCC ACAATGGAGAGATGGGAATACACAAAGTTTCATACAATTCTTCTAAAAGG ATTTTCGTGGAACTAACCATTTTATGAAGTCCTAACTTTAAAGAATCGTG TTTGCCGTGATTATCAATTGGCGGGCTGAAAATCCTACCATCCTGCATAA AATTCTTCTACCTCAAGGATTATGGGGAAAATACAGCATTGTTTGAGACC ATATTTTCTTTAATGTGGCGAGAGATTCGGTATTTACCTCGAAACATGGA GATCGGCATCAGGGAGACAACCAGGATTGTGACGATTGTTTTCAAACTCA AAGGAGACAAAAATCTGTTAATTATGAGACNAAACTCATATCCAAATTAT TTTTTCCCAAAAGGTTTTCCCTCCTCATTGGCAATTTTAGTTTACTTCAT ACTAAACCAGTGTTCTACTCTACTGCGGTCTATTTTTGGCGAAGATCGGA AAGATGGAGTAGTTCAATCTACTGTTTTATATAAGATCTATGTGCAATTG CCCACAATCCACCACTCTTTTCTCTTAACAGCATATATTTTGTGAAGATT GTATTGGTATATGGTTTGACCGCGAGCGGACGTGTCCAATGTGTCGCGCG AAGATCGCTGAAGATCCACAATGGAGAGATGGGAATACACAAAGTTTCAT ACAATTCTTCTAAAAGGATTTTCGTGGAACTAACCATTTTATGAAGTCCT AACTTTAAAGAATCGTGTTTGCCGTGATTATCAATTGGCGGGCTGAAAAT TCTACCATCCTGCATAAAATTCTTCTACCTCAAGGATTATGGGGAAAATA CAGCATTGTTTGAGACCATATTTTCTTTAATGTGGCGAGAGATTCGGTAT TTACCTCGAAACATGGAGATCGGCATCAGGGAGACAACCATGATTGTGAC GATTGTTTTCAAACTCAAAGGAGACAAAAATCTGTTAATTATGAGACGGC AACATTAATTTGAAAATTTTTCGGCACTTTTTTTCTACCATATTTTTATT TATAAAAGAATCGATTTGGACGGATTGAGGGAGAATTCAATGAACATGCA AATTGAGATTAATGTTTGGAATGGATGGATGAGATCTGTTGCTGGGAGAG AATTTGGAAACTAATTTGGCGCTGGTTTTTTATCCACTTCATTCAATTTT TGTATAGATTTTTTAAATGCAAGATTCACCTAATAGTAATACAAGATGTT ATTACCTCTGGCGATATAACGTTAGTTCCTAGCGGGGGAGGGACTATATT TCACAGATCTGTAAAGCCCGAAGGGCTAGATCCGCCGCCTATATCGAAAA GTGAAGCAAGTTTTGGTAGGATTTCCTACCAAAGAAATCACGTGACAACA AGCAATTTCACTGATTTGAGAGATGCGAAATGGCGTTTGCCGCCCACTAT TTTTATCTCGCGCTCCGAAAACAATTAAAATGCTAGATCCTATCCATCGG AACGAAATTTAAAAAGTTTTTTTTTCTGGAGAAAGCTTAAAATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045619XLOC_045619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073497-exon-scaffold_93-1575043694:18769..19165TCONS_00073497-exon-scaffold_93-1575043694:18769..19165Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:13570..14102TCONS_00073497-exon-scaffold_93-1575043694:13570..14102Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:12877..13283TCONS_00073497-exon-scaffold_93-1575043694:12877..13283Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:12364..12446TCONS_00073497-exon-scaffold_93-1575043694:12364..12446Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:11934..12086TCONS_00073497-exon-scaffold_93-1575043694:11934..12086Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:11184..11249TCONS_00073497-exon-scaffold_93-1575043694:11184..11249Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:10206..10310TCONS_00073497-exon-scaffold_93-1575043694:10206..10310Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1575043694:8119..9084TCONS_00073497-exon-scaffold_93-1575043694:8119..9084Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:18769..19165TCONS_00073497-exon-scaffold_93-1510915933:18769..19165Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:13570..14102TCONS_00073497-exon-scaffold_93-1510915933:13570..14102Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:12877..13283TCONS_00073497-exon-scaffold_93-1510915933:12877..13283Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:12364..12446TCONS_00073497-exon-scaffold_93-1510915933:12364..12446Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:11934..12086TCONS_00073497-exon-scaffold_93-1510915933:11934..12086Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:11184..11249TCONS_00073497-exon-scaffold_93-1510915933:11184..11249Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:10206..10310TCONS_00073497-exon-scaffold_93-1510915933:10206..10310Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1510915933:8119..9084TCONS_00073497-exon-scaffold_93-1510915933:8119..9084Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:18769..19165TCONS_00073497-exon-scaffold_93-1491911889:18769..19165Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:13570..14102TCONS_00073497-exon-scaffold_93-1491911889:13570..14102Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:12877..13283TCONS_00073497-exon-scaffold_93-1491911889:12877..13283Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:12364..12446TCONS_00073497-exon-scaffold_93-1491911889:12364..12446Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:11934..12086TCONS_00073497-exon-scaffold_93-1491911889:11934..12086Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:11184..11249TCONS_00073497-exon-scaffold_93-1491911889:11184..11249Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:10206..10310TCONS_00073497-exon-scaffold_93-1491911889:10206..10310Clytia hemisphaericaexon
TCONS_00073497-exon-scaffold_93-1491911889:8119..9084TCONS_00073497-exon-scaffold_93-1491911889:8119..9084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:8119..19165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.0385 11.7383 7.08079 6.24649 2.06136 1.3103 2.97603 3.61915 2.43998 2.48212 3.18153 2.05362 2.65457 1.96139 2.83418 4.04138 1.81025 2.89177 2.59184 3.36925 2.50248 3.6791 8.34744 8.08539 2.30156 3.01115 3.81659 3.02424 6.48419 7.03322
Blast
BLAST of TCONS_00073497 vs. Swiss-Prot (Human)
Match: RNFT1 (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-42
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = 2
Query: 1238 TYHFSS*YYSLMFLKPSIHTMDVWAVFWCVGITDFVVRFVTMAIKCFIIITPRRMISFKKRGKQFLVIENISQFYRMLLPVPVWYNYFMLSYDVLG-VDYFALFSTIGYFLLKVRM--LFLKLKEILHAFINYCKDTRYGRAPSKEVLLELGDSCPICQEEMSDPVELTLCKHIFCEDCIGIWFDRERTCPMCRAKIAED-PQWRDGNTQSFIQFF 1873
            T+H  S YYSL+FL P++  +  W VFW VGITDF+++F  M +KC I++ P  ++ FK +G  ++++E + Q+YR  +P+PVW+ Y ++SY   G V  ++L   +    L +++   F  L+        +     YG A SK    ++ D C ICQ E   P+ L +C+HIFCE+C+ +WF+RE+TCP+CR  I++   +W+DG T S +Q +
Sbjct:  222 TFHSQSLYYSLIFLNPTLDHLSFWEVFWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRY-LISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPSYGVAASKRQCSDVDDICSICQAEFQKPI-LLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGATSSHLQIY 435          
The following BLAST results are available for this feature:
BLAST of TCONS_00073497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNFT13.597e-4237.96RING finger and transmembrane domain-containing pr... [more]
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