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TCONS_00073490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073490
Unique NameTCONS_00073490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073490 ID=TCONS_00073490|Name=TCONS_00073490|organism=Clytia hemisphaerica|type=transcript|length=1488bp
gaaaaaatgatatttgaatCACTGGtgatgaaaacaaacaaaaagagaaa
agtaTTCATTCTGACGAAATTGTAACAATCAGTTCGGGGTATTAGTATTT
GCTATGGGAATGCTTTTCTCGAAGAATAAACTAGTCATGAAGAGTAACAG
CAAAGACAATTTATCAGATATTTATATCGTTCCACCCTCATTGAAGATGG
AGTTGGAGCTAATTAATTTCACAGATGCAGAAATCTCAGAGGTGAAAGAA
GCATTCGGTTTATACGACAAACAACGCAATGGATACATCTCGCGAAAATC
TTTCCTAACCGTGATGAGATCTTTGGGGCAAAATCCCACTGAAGATGAAT
ATGATGATATGTTAAATGAAGTGGACGCAGACCGAAATGGTTTGATAGAA
TTTTCTGAATTCCTTTACTTGGTTGCACGACATACAACAAATTTTGAAGA
GACggcaaaatatttatttcacgTGTTTGACCACAGAGGGACTGGATATT
TGAACAAAACACAACTTTGTGACGTCATGTCACTTGATCGTGGCCTCACA
TCGAACGATATTGAAGATCTcttatcttttttcaattccGATAGAAACAA
TAATGTTGATATTGACGAATTCGTCCGTGTATTGAAGTACCTTCCGACGT
CGTACGACGAAGAAGATCAGCAAAATAGCGCCACGTCACCCACACAAcag
acttcaaaaaaaggaggaAAACTCCCAAACAAAACATTACATCCAAATAC
ATCAGAACAAAAAACAGAATCCatgcaaaataccaaaaatcttaaaaaca
gtAATAGTAAcaatacaagcaaacaaataaaTAATACGTCaccgaaaaaa
acaaaaacacagaCCAGCCAATCATCGTcgaaaaacgaaagtgataaaaa
acagaCCCGCGATAACAACAACACCAAAtctacaaaaacacaaaaagtat
CCAATAAGAATGGTAGTGTAAGCAAACCTTCAGAGAAACATGGTGCAAAG
AAGGCCTTAAATACCAAAATAGCTGTTCACGAGAATGGTAAGACTACAGT
CGGAATTGAAGTTTGATGACAATACTAAATACCGGTGAAGTTGGTCTGTT
TGATGCCTAATGCCTGGATGGTTTCTGTAACTTGAGAGATCTTACCGTGT
GTTTGTCTGTTTCGtctaaataaattatttttctagTACTAGATTATCAA
AAAACAGGAGCATACCATTGTATAGGTCGTTTCATAGGTTACTTTGAGTG
TAACGATAGCCTCGTTTTAAAATCATTTCCAAGGTGATAACATCTCTTGA
ATCTTCaagttatttttgtaaatagatTTAATACCTtagtaattttttga
aaacgagATAAGCGTTGCTCGTGATGTAATTTGGCATTTTGTCTGCCAAA
GATAGAGCATCAGTCCACCACAAAGGCAGCCCTGTCTCACAGACCCATTT
TAAATAGAAATTCTTATCCCCATACTCTTGTCTCCCNN
Run BLAST on NCBI

protein sequence of TCONS_00073490-protein

>TCONS_00073490-protein ID=TCONS_00073490-protein|Name=TCONS_00073490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MGMLFSKNKLVMKSNSKDNLSDIYIVPPSLKMELELINFTDAEISEVKEA
FGLYDKQRNGYISRKSFLTVMRSLGQNPTEDEYDDMLNEVDADRNGLIEF
SEFLYLVARHTTNFEETAKYLFHVFDHRGTGYLNKTQLCDVMSLDRGLTS
NDIEDLLSFFNSDRNNNVDIDEFVRVLKYLPTSYDEEDQQNSATSPTQQT
SKKGGKLPNKTLHPNTSEQKTESMQNTKNLKNSNSNNTSKQINNTSPKKT
KTQTSQSSSKNESDKKQTRDNNNTKSTKTQKVSNKNGSVSKPSEKHGAKK
ALNTKIAVHENGKTTVGIEV
Run BLAST on NCBI

transcript from alignment at scaffold_93:87608..92262+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073490 ID=TCONS_00073490|Name=TCONS_00073490|organism=Clytia hemisphaerica|type=transcript|length=4655bp|location=Sequence derived from alignment at scaffold_93:87608..92262+ (Clytia hemisphaerica)
gaaaaaatgatatttgaatCACTGGtgatgaaaacaaacaaaaagagaaa agtaTTCATTCTGACGAAATTGTAACAATCAGTTCGGGGTATTAGTATTT GCTATGGGAATGCTTTTCTCGAAGAATAAACTAGTCATGAAGAGTAACAG CAAAGACAATTTATCAGATATTTATATCGTTCCACCCTCATTGAAGATGG AGTTGGAGGTAGGTTCAGTTTGCGCTTACCTTCTTTTGACGTTTATCACG TTAAATGTACGTTcacttagctctagtttagacggcccactttttgccct gcctattctaattgtgaattaaagagggcataaagtgggccgtctaaagt gatgcatagtcctcttttgacgtcaatgcaatgtcttctttcaaaccttt ccaagcaaagattttaacagccaactttgtgccctctttctgcctactct aacaattagaataggcagggcagaaagtcggccgtctaaactagagctta acGTTGATAAGACGTTAAATATAGTTAAAACCATTTTTCATCATATCCCT GTTGCAGTCCTCTTGTGTATactacatccccttctcacagacccactggg aaccattcccattggaaaaattgtccaaaatatcgtccccagtggaaaat tatcctctaatttttgttcccactgaaaataatcaaataaaccaatccac ACTTctaaatattatgctatttttcccatccacACTGAATTATCTGACTT AGCcataaaagaaaatgaaatatcaacccccattgagtttcagtccgtta tttttatcctcactggctgaaaaaaatcctactgggcATTTGAGAAGGGG TGTACTGTAAGGGCCTGATCCTGTTTCAAAATGGGAATACTCTGATTACT CTTCCTcttgaaagaaagtttgatCGTATTCCTGAACAACAAACATCGAT TCCATATTTTTCTACCACAATTAACTTGATTGcaatacagttgatgctct ctaattcgatcttcaaggagaATTgggttttcatcgaataagggagcgtc gtttatgagagtttttttgttgatggggactttaaatttcatcgaataag ggagtctATCGaaaagtagaacgtcgaattagagagtgtcaactgttgTT TCGGAACTGACAGGCTGAAGGTCTACAACCGGTTTATTTTCTTTTCCACT TTTTACTTTCTAGCTAATTAATTTCACAGATGCAGAAATCTCAGGTAACA TTCACTATAATTTAGAGCAAGCATAAATCACCGACAACACCAACAGTAAA AACCTGCACATATTGTTTCACAGCAAAATCCAAAGCTTTTGAAATCTTCG GGTTTCTTAACTTTATAAGGCTAAGAATGTTATtaaatatttctaatttt ttgagtATATTATGCAATTTTGGTGTTTGATATTCCGTAAATccttagat gttcttaacttgttctcaatatttgGGCTATTGAatccttgtgttcttat atagatcGTTGTTATAGGAAAAACGTATACATGTTGCTAGTGTTAAACTT TCCTATCTATCAAACAGAGGTGAAAGAAGCATTCGGTTTATACGACAAAC AACGCAATGGATACATCTCGCGAAAATCTTTCCTAACCGTGATGAGATCT TTGGGGCAAAATCCCACTGAAGATGAATATGATGATATGTTAAATGAAGT GGACGCAGACCGTAAGTGTGGCCTCACTCACTAAGAGATATATTCAAGGT TCTGCTACTAGTTTCATCTTAGTAAGTGAGGAGTTCGTTGCATACATCCA TCAACTTTTCATTTATCATAGAATCCAATGAAGTCTTATTCaaagattat ttttttgatttaaaagtatGTATTGCTGAAGCAGTTAATATCAGCccttt attcttttttattttctcaccATAGGAAATGGTTTGATAGAATTTTCTGA ATTCCTTTACTTGGTTGCACGACATACAACAAATTTTGAAGAGACggcaa aatatttatttcacgTGTTTGACCACAGAGGGACTGGATATTTGAACAAA ACACAACTTTGTGACGTCATGTCACTTGATCGTGGCCTCACATCGAACGA TATTGAAGATCTcttatcttttttcaattccGATAGAAACAATAATGTTG ATATTGACGGTGAGTTAGAACAATGaccacacccctgtctcacagaacTA GTTGCACTGACCACGCCCCTGTCTTCCAGAACTAGCTGCACTGACCACGC CCCTATTTCACAAAACAAGTTGCACTGACCACGTCCCTATTTAACAAAAC TAGTTGCACTGACCACGCCCCTGTCTCACAGAACTAGTTGCACTGACCAC GCCCCTATTTCACAGAACTAGTTGCATTAGCCACGCCCCTGTCTCAGAGA ACTAGTTGCACTGACCACGCCCCTGTCTCACAGAACTAGTTGCACTGGCC ACGCCCCTTTCTCACAGAACTAGTTGCACTGACCACGCCCCTGTCTCACA GAACTAGTTGCACTGACCACGCCCCTGTCTCACAGAACTAGTTGCACTGA CCACGCCCCTGTCTCACAGAACTAGTTGCATTGACCACGCCCCTGTCTCA CAGAACTAGTTGCACTGACCACGCCCCTATTTCACAGAACTAGTTGCACT GACCACGCCCCTATTTCACAGAACTAGTTGCACTGACCACGCCCCAATTT CACAGAACTAGTTGCACTAGCCACGCCCCTGTCTCACAGAACTAGTTGCA CTGACCACGCCCCTGTCTCACAGAACTAGTTGCACTGACCACGCCCTTGT CTCACAGAACTAGTTGTACTTGCCACGCCCCTGTCTCCCAGAACTAGTTG TACTGACTGGTTATACCTCTATAtctcgaaaaaaaatctgaggATTTTAA CTAAATCTCTACTATCTCATTGAAAGCTAATTGCAAGGGGCTTGGTTCCA CCAAATTGAATAAAACAATGACACATCTTACAAACAGAGCCACACCCTTC ATTTACAGGAACAAGTGCACTAACTACACCCTGTATGACTAATTTCACTA ACCGCATCTATTTTCGCAGAACTATTTTCGTTAcccacacccctgtctcg ttgTCCCATAGAACTAACTGTACTAACCACACCCCAGTATCAGAGAACCA AGAATGATAATAACAACACCCTTGTCTCACAAAACTGATTTCAATGACCA CGCCACTTCCTCNAAGAACAATAATAACAACACCCTTGTCTCACAAAACT GATTTCAATGACAACGTCACTTCCTTACAAAACTAATTGTACTGACCATA CCATAGTTTGCTGACACTGGCATCAGCTTAGTCTAAATTGATTGGTGTAT TCCAAGTTTTTGTTAGGCTTGGCCTTAATCTTGTCATTCAATTAATTTAC CATTCCCTCGTCTCTTGAAAAAAAGTGTTCAAAGTCATTTTCGTAACAAA CTGTTAAAGAAAAACTCATAAAAAGTTATAATTTTGGCACCCTTtagaga ctgttcatctaacgtttccaaacaatctaaaaagaacgaaaaataactat taaaagcgataaaaagaacaacaaaccctaaccctaactatcaaagaacg acatatttcgccgtccacaaccccaaCCGCAAGGGACTGTACCACCCTTA CAGATTCATTCCTCCTTGTttgtcacgggaattaactacgtGTGGTTTGA AAGAACGCAAAATTACCAATGTgtataagtctctatttgggtgagctgga aacattagatgaacttAAATCTTTCTGTCTTTAGAATTCGTCCGTGTATT GAAGTACCTTCCGACGTCGTACGACGAAGAAGATCAGCAAAATAGCGCCA CGTCACCCACACAAcagacttcaaaaaaaggaggaAAACTCCCAAACAAA ACATTACATCCAAATACATCAGAACAAAAAACAGAATCCatgcaaaatac caaaaatcttaaaaacagtAATAGTAAcaatacaagcaaacaaataaaTA ATACGTCaccgaaaaaaacaaaaacacagaCCAGCCAATCATCGTcgaaa aacgaaagtgataaaaaacagaCCCGCGATAACAACAACACCAAAtctac aaaaacacaaaaagtatCCAATAAGAATGGTAGTGTAAGCAAACCTTCAG AGAAACATGGTGCAAAGAAGGCCTTAAATACCAAAATAGCTGTTCACGAG AATGGTAAGACTACAGTCGGAATTGAAGTTTGATGACAATACTAAATACC GGTGAAGTTGGTCTGTTTGATGCCTAATGCCTGGATGGTTTCTGTAACTT GAGAGATCTTACCGTGTGTTTGTCTGTTTCGtctaaataaattatttttc tagTACTAGATTATCAAAAAACAGGAGCATACCATTGTATAGGTCGTTTC ATAGGTTACTTTGAGTGTAACGATAGCCTCGTTTTAAAATCATTTCCAAG GTGATAACATCTCTTGAATCTTCaagttatttttgtaaatagatTTAATA CCTtagtaattttttgaaaacgagATAAGCGTTGCTCGTGATGTAATTTG GCATTTTGTCTGCCAAAGATAGAGCATCAGTCCACCACAAAGGCAGCCCT GTCTCACAGACCCATTTTAAATAGAAATTCTTATCCCCATACTCTTGTCT CCCNN

Coding sequence (CDS) from alignment at scaffold_93:87608..92262+

>TCONS_00073490 ID=TCONS_00073490|Name=TCONS_00073490|organism=Clytia hemisphaerica|type=CDS|length=4815bp|location=Sequence derived from alignment at scaffold_93:87608..92262+ (Clytia hemisphaerica)
ATGGGAATGCTTTTCTCGAAGAATAAACTAGTCATGAAGAGTAACAGCAA
AGACAATTTATCAGATATTTATATCGTTCCACCCTCATTGAAGATGGAGT
TGGAGCTAATTAATTTCACAGATGCAGAAATCTCAGAGGTGAAAGAAGCA
TTCGGTTTATACGACAAACAACGCAATGGATACATCTCGCGAAAATCTTT
CCTAACCGTGATGAGATCTTTGGGGCAAAATCCCACTGAAGATGAATATG
ATGATATGTTAAATGAAGTGGACGCAGACCGAAATGGTTTGATAGAATTT
TCTGAATTCCTTTACTTGGTTGCACGACATACAACAAATTTTGAAGAGAC
ggcaaaatatttatttcacgTGTTTGACCACAGAGGGACTGGATATTTGA
ACAAAACACAACTTTGTGACGTCATGTCACTTGATCGTGGCCTCACATCG
AACGATATTGAAGATCTcttatcttttttcaattccGATAGAAACAATAA
TGTTGATATTGACGAATTCGTCCGTGTATTGAAGTACCTTCCGACGTCGT
ACGACGAAGAAGATCAGCAAAATAGCGCCACGTCACCCACACAAcagact
tcaaaaaaaggaggaAAACTCCCAAACAAAACATTACATCCAAATACATC
AGAACAAAAAACAGAATCCatgcaaaataccaaaaatcttaaaaacagtA
ATAGTAAcaatacaagcaaacaaataaaTAATACGTCaccgaaaaaaaca
aaaacacagaCCAGCCAATCATCGTcgaaaaacgaaagtgataaaaaaca
gaCCCGCGATAACAACAACACCAAAtctacaaaaacacaaaaagtatCCA
ATAAGAATGGTAGTGTAAGCAAACCTTCAGAGAAACATGGTGCAAAGAAG
GCCTTAAATACCAAAATAGCTGTTCACGAGAATGGTAAGACTACAGTCGG
AATTGAAGTTTGAATGGGAATGCTTTTCTCGAAGAATAAACTAGTCATGA
AGAGTAACAGCAAAGACAATTTATCAGATATTTATATCGTTCCACCCTCA
TTGAAGATGGAGTTGGAGCTAATTAATTTCACAGATGCAGAAATCTCAGA
GGTGAAAGAAGCATTCGGTTTATACGACAAACAACGCAATGGATACATCT
CGCGAAAATCTTTCCTAACCGTGATGAGATCTTTGGGGCAAAATCCCACT
GAAGATGAATATGATGATATGTTAAATGAAGTGGACGCAGACCGAAATGG
TTTGATAGAATTTTCTGAATTCCTTTACTTGGTTGCACGACATACAACAA
ATTTTGAAGAGACggcaaaatatttatttcacgTGTTTGACCACAGAGGG
ACTGGATATTTGAACAAAACACAACTTTGTGACGTCATGTCACTTGATCG
TGGCCTCACATCGAACGATATTGAAGATCTcttatcttttttcaattccG
ATAGAAACAATAATGTTGATATTGACGAATTCGTCCGTGTATTGAAGTAC
CTTCCGACGTCGTACGACGAAGAAGATCAGCAAAATAGCGCCACGTCACC
CACACAAcagacttcaaaaaaaggaggaAAACTCCCAAACAAAACATTAC
ATCCAAATACATCAGAACAAAAAACAGAATCCatgcaaaataccaaaaat
cttaaaaacagtAATAGTAAcaatacaagcaaacaaataaaTAATACGTC
accgaaaaaaacaaaaacacagaCCAGCCAATCATCGTcgaaaaacgaaa
gtgataaaaaacagaCCCGCGATAACAACAACACCAAAtctacaaaaaca
caaaaagtatCCAATAAGAATGGTAGTGTAAGCAAACCTTCAGAGAAACA
TGGTGCAAAGAAGGCCTTAAATACCAAAATAGCTGTTCACGAGAATGGTA
AGACTACAGTCGGAATTGAAGTTTGAATGGGAATGCTTTTCTCGAAGAAT
AAACTAGTCATGAAGAGTAACAGCAAAGACAATTTATCAGATATTTATAT
CGTTCCACCCTCATTGAAGATGGAGTTGGAGCTAATTAATTTCACAGATG
CAGAAATCTCAGAGGTGAAAGAAGCATTCGGTTTATACGACAAACAACGC
AATGGATACATCTCGCGAAAATCTTTCCTAACCGTGATGAGATCTTTGGG
GCAAAATCCCACTGAAGATGAATATGATGATATGTTAAATGAAGTGGACG
CAGACCGAAATGGTTTGATAGAATTTTCTGAATTCCTTTACTTGGTTGCA
CGACATACAACAAATTTTGAAGAGACggcaaaatatttatttcacgTGTT
TGACCACAGAGGGACTGGATATTTGAACAAAACACAACTTTGTGACGTCA
TGTCACTTGATCGTGGCCTCACATCGAACGATATTGAAGATCTcttatct
tttttcaattccGATAGAAACAATAATGTTGATATTGACGAATTCGTCCG
TGTATTGAAGTACCTTCCGACGTCGTACGACGAAGAAGATCAGCAAAATA
GCGCCACGTCACCCACACAAcagacttcaaaaaaaggaggaAAACTCCCA
AACAAAACATTACATCCAAATACATCAGAACAAAAAACAGAATCCatgca
aaataccaaaaatcttaaaaacagtAATAGTAAcaatacaagcaaacaaa
taaaTAATACGTCaccgaaaaaaacaaaaacacagaCCAGCCAATCATCG
TcgaaaaacgaaagtgataaaaaacagaCCCGCGATAACAACAACACCAA
AtctacaaaaacacaaaaagtatCCAATAAGAATGGTAGTGTAAGCAAAC
CTTCAGAGAAACATGGTGCAAAGAAGGCCTTAAATACCAAAATAGCTGTT
CACGAGAATGGTAAGACTACAGTCGGAATTGAAGTTTGAATGGGAATGCT
TTTCTCGAAGAATAAACTAGTCATGAAGAGTAACAGCAAAGACAATTTAT
CAGATATTTATATCGTTCCACCCTCATTGAAGATGGAGTTGGAGCTAATT
AATTTCACAGATGCAGAAATCTCAGAGGTGAAAGAAGCATTCGGTTTATA
CGACAAACAACGCAATGGATACATCTCGCGAAAATCTTTCCTAACCGTGA
TGAGATCTTTGGGGCAAAATCCCACTGAAGATGAATATGATGATATGTTA
AATGAAGTGGACGCAGACCGAAATGGTTTGATAGAATTTTCTGAATTCCT
TTACTTGGTTGCACGACATACAACAAATTTTGAAGAGACggcaaaatatt
tatttcacgTGTTTGACCACAGAGGGACTGGATATTTGAACAAAACACAA
CTTTGTGACGTCATGTCACTTGATCGTGGCCTCACATCGAACGATATTGA
AGATCTcttatcttttttcaattccGATAGAAACAATAATGTTGATATTG
ACGAATTCGTCCGTGTATTGAAGTACCTTCCGACGTCGTACGACGAAGAA
GATCAGCAAAATAGCGCCACGTCACCCACACAAcagacttcaaaaaaagg
aggaAAACTCCCAAACAAAACATTACATCCAAATACATCAGAACAAAAAA
CAGAATCCatgcaaaataccaaaaatcttaaaaacagtAATAGTAAcaat
acaagcaaacaaataaaTAATACGTCaccgaaaaaaacaaaaacacagaC
CAGCCAATCATCGTcgaaaaacgaaagtgataaaaaacagaCCCGCGATA
ACAACAACACCAAAtctacaaaaacacaaaaagtatCCAATAAGAATGGT
AGTGTAAGCAAACCTTCAGAGAAACATGGTGCAAAGAAGGCCTTAAATAC
CAAAATAGCTGTTCACGAGAATGGTAAGACTACAGTCGGAATTGAAGTTT
GAATGGGAATGCTTTTCTCGAAGAATAAACTAGTCATGAAGAGTAACAGC
AAAGACAATTTATCAGATATTTATATCGTTCCACCCTCATTGAAGATGGA
GTTGGAGCTAATTAATTTCACAGATGCAGAAATCTCAGAGGTGAAAGAAG
CATTCGGTTTATACGACAAACAACGCAATGGATACATCTCGCGAAAATCT
TTCCTAACCGTGATGAGATCTTTGGGGCAAAATCCCACTGAAGATGAATA
TGATGATATGTTAAATGAAGTGGACGCAGACCGAAATGGTTTGATAGAAT
TTTCTGAATTCCTTTACTTGGTTGCACGACATACAACAAATTTTGAAGAG
ACggcaaaatatttatttcacgTGTTTGACCACAGAGGGACTGGATATTT
GAACAAAACACAACTTTGTGACGTCATGTCACTTGATCGTGGCCTCACAT
CGAACGATATTGAAGATCTcttatcttttttcaattccGATAGAAACAAT
AATGTTGATATTGACGAATTCGTCCGTGTATTGAAGTACCTTCCGACGTC
GTACGACGAAGAAGATCAGCAAAATAGCGCCACGTCACCCACACAAcaga
cttcaaaaaaaggaggaAAACTCCCAAACAAAACATTACATCCAAATACA
TCAGAACAAAAAACAGAATCCatgcaaaataccaaaaatcttaaaaacag
tAATAGTAAcaatacaagcaaacaaataaaTAATACGTCaccgaaaaaaa
caaaaacacagaCCAGCCAATCATCGTcgaaaaacgaaagtgataaaaaa
cagaCCCGCGATAACAACAACACCAAAtctacaaaaacacaaaaagtatC
CAATAAGAATGGTAGTGTAAGCAAACCTTCAGAGAAACATGGTGCAAAGA
AGGCCTTAAATACCAAAATAGCTGTTCACGAGAATGGTAAGACTACAGTC
GGAATTGAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045614XLOC_045614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073490-exon-scaffold_93-1491911889:87608..87815TCONS_00073490-exon-scaffold_93-1491911889:87608..87815Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1510915933:87608..87815TCONS_00073490-exon-scaffold_93-1510915933:87608..87815Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1575043694:87608..87815TCONS_00073490-exon-scaffold_93-1575043694:87608..87815Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1491911889:88821..88851TCONS_00073490-exon-scaffold_93-1491911889:88821..88851Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1510915933:88821..88851TCONS_00073490-exon-scaffold_93-1510915933:88821..88851Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1575043694:88821..88851TCONS_00073490-exon-scaffold_93-1575043694:88821..88851Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1491911889:89175..89318TCONS_00073490-exon-scaffold_93-1491911889:89175..89318Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1510915933:89175..89318TCONS_00073490-exon-scaffold_93-1510915933:89175..89318Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1575043694:89175..89318TCONS_00073490-exon-scaffold_93-1575043694:89175..89318Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1491911889:89533..89766TCONS_00073490-exon-scaffold_93-1491911889:89533..89766Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1510915933:89533..89766TCONS_00073490-exon-scaffold_93-1510915933:89533..89766Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1575043694:89533..89766TCONS_00073490-exon-scaffold_93-1575043694:89533..89766Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1491911889:91392..92262TCONS_00073490-exon-scaffold_93-1491911889:91392..92262Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1510915933:91392..92262TCONS_00073490-exon-scaffold_93-1510915933:91392..92262Clytia hemisphaericaexon
TCONS_00073490-exon-scaffold_93-1575043694:91392..92262TCONS_00073490-exon-scaffold_93-1575043694:91392..92262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073490-proteinTCONS_00073490-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:87608..92262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.09828 9.2239 12.3116 13.397 1.64591 1.15283 9.02259 9.34828 4.27759 5.00896 3.99062 2.03212 11.4932 9.63675 13.1048 9.22912 5.03924 3.88447 6.07428 7.34368 5.49796 5.96517 9.22333 9.8311 3.27599 5.36906 5.5151 4.6681 3.63295 4.83065
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00073490 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.539e-31
Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 2
Query:  218 FTDAEISEVKEAFGLYDKQRNGYISRKSFLTVMRSLGQNPTEDEYDDMLNEVDADRNGLIEFSEFLYLVARHT--TNFEETAKYLFHVFDHRGTGYLNKTQLCDVMS-LDRGLTSNDIEDLLSFFNSDRNNNVDIDEFVRVL 634
             T+ +I+E KEAF L+DK  +G I+ K   TVMRSLGQNPTE E  DM+NEVDAD NG I+F EFL ++AR    T+ EE  +  F VFD  G GY++  +L  VM+ L   LT  ++++++   + D +  V+ +EFV+++
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
The following BLAST results are available for this feature:
BLAST of TCONS_00073490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.539e-3145.07Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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