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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073486 ID=TCONS_00073486|Name=TCONS_00073486|organism=Clytia hemisphaerica|type=transcript|length=2391bpRun BLAST on NCBI protein sequence of TCONS_00073486-protein >TCONS_00073486-protein ID=TCONS_00073486-protein|Name=TCONS_00073486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp MSSESQLNDWTVKQLQEELKKRKLSIYGRKSVLVERLFDLAKTEEVRNRNRun BLAST on NCBI transcript from alignment at scaffold_93:43447..50280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073486 ID=TCONS_00073486|Name=TCONS_00073486|organism=Clytia hemisphaerica|type=transcript|length=6834bp|location=Sequence derived from alignment at scaffold_93:43447..50280+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_93:43447..50280+ >TCONS_00073486 ID=TCONS_00073486|Name=TCONS_00073486|organism=Clytia hemisphaerica|type=CDS|length=19320bp|location=Sequence derived from alignment at scaffold_93:43447..50280+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073486 vs. Swiss-Prot (Human)
Match: VMP1 (Vacuole membrane protein 1 OS=Homo sapiens GN=VMP1 PE=1 SV=1) HSP 1 Score: 367.466 bits (942), Expect = 2.099e-118 Identity = 206/360 (57.22%), Postives = 263/360 (73.06%), Query Frame = 3
Query: 285 KKIVIWRKPLLTIHYFILELFELIKQEKESISKHRKT--CSILAIISFLVLSVYTWDGPHQSYVSGIEKYLLWCGYWXXXXXXXXXXXXXXXHTFLLYLGPHIAKVTLAAWECGSLNFPEPPYPETILCPDSVADDSSTPINMFSIMSKVRLEAVMWGAGTAIGELPPYFMARAARLSGXX-XXXXXXXXXXXXXXXXXXQGLFTRLKKAVPQIVERVGFFGILAFASIPNPLFDLAGITCGHCLVPFWTFFGATLIGKSIIKMHIQQTFVILCFSKRYVEQLLEFLSGVPYVGSYIQYPLERAVRAQKSKLHGASSGKAGEDGNILGFIFEKFVTIMVVYFIISIVNSLAQSYAKKVDE 1355
+ IV+WR+PL+T+ YF LE+ ++K E S HR++ S L +++ L+ + Y +G HQ YV IEK L YW+GLGILSSVGLGTGLHTFLLYLGPHIA VTLAA+EC S+NFPEPPYP+ I+CPD + + I+++SI+SKVR+EA MWG GTAIGELPPYFMARAARLSG + D + E + Q +R K AV ++V++VGFFGILA ASIPNPLFDLAGITCGH LVPFWTFFGATLIGK+IIKMHIQ+ FVI+ FSK VEQ++ F+ VP +G +Q P + + AQ+ KLH S + N L ++FEK V +MV YFI+SI+NS+AQSYAK++ +
Sbjct: 42 QNIVLWRQPLITLQYFSLEILVILK-EWTSKLWHRQSIVVSFLLLLAVLIATYYV-EGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGT--ISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQ 397 The following BLAST results are available for this feature:
BLAST of TCONS_00073486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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