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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073482 ID=TCONS_00073482|Name=TCONS_00073482|organism=Clytia hemisphaerica|type=transcript|length=1195bp
TGTAAAACGAAATTTTAACCCTCTTCACATCATTACTCACAAATTgtaaa
gaacaatttttttcaaagcacCTGTCTCACTAGGAGTCTAGGAGCCCATT
CAAACCCTTCCTGAAATCCTAAAAGATAACAAATCTAACattgtttttta
ataataatcttgatttttaaataatttgaataaatccTATAAAATATAAC
AGCTAAAGACAAATACTCCTTTAAGATATTCATAATATCTTACTTAATAG
CAAAGCAGAGAGATCTACTTAAATAAAATccaaaatatcattaaaaattc
tAGATCTACAAGGGTCccgtataacaaaataaattataGCTAGAAAGCCT
TTTGAGCTAGGGCAATCATGTTAAAATTATAATTGCCAGGGTCTCTTTCC
ATAAATTTCTTACAAACCACTGCAGTATCTTCGAGTAGAGTATCAGCACT
TGTTTTCCCATGGTTGATGGGGAAGGGTTTGCGACCATCAAGCTCATACA
AGAAACCATCTTTCTCAACAAAAGCAATGAAGTGAAGATCAACTTTCTCA
TCGATGGAAGGGGCTTTTGTTTGTCCCTCCTGCGCACTGTCGCCATGACA
ACGTGTTACACCTTCATGTTTTTCCAAAGCAACAGCCCTTTCGTCTGGTG
TCATCGACTTTGTGCTATCCAAGTAGTCTTTAACGACGCTACCATCTTTG
AAAGTCAGCTTTTCTACATTATTAGCTATAGCATGAATAATTCCAACAGT
TCCACAAGCATTACCTACAGTTTGCTTTGTGAAATACACATTATCGCTCA
CTGTTTGCCCTTCTTTTGTTATCTTTTCTTCTTCCTCTTTGCGAaagttt
tcataattttcagtGATTGGGAAAAGCAAAACTAAAGATACCACAGGCCT
TGGAACCATCATTAAAAGATCAGGTTCAAAACCATAGACATCACTGTATG
CCAAAACAGACATGTCCACACCAAGGTTTTCTGTGTATTTGTTCATCACA
TCTGGATTGGACTCTAATGGCAGCCATCTTGGTTTagacatgttgttttt
tttttccttttggaATTAACTAAAcacaaacatcaaaatttcagctttta
gGATTATCATATTATGGAGTATAACAGAGTATAAAACAATAATATGTCAG
CAAAATGAttaagttttttatgaaataaaataattttgttactCT Run BLAST on NCBI protein sequence of TCONS_00073482-protein >TCONS_00073482-protein ID=TCONS_00073482-protein|Name=TCONS_00073482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MSKPRWLPLESNPDVMNKYTENLGVDMSVLAYSDVYGFEPDLLMMVPRPV
VSLVLLFPITENYENFRKEEEEKITKEGQTVSDNVYFTKQTVGNACGTVG
IIHAIANNVEKLTFKDGSVVKDYLDSTKSMTPDERAVALEKHEGVTRCHG
DSAQEGQTKAPSIDEKVDLHFIAFVEKDGFLYELDGRKPFPINHGKTSAD
TLLEDTAVVCKKFMERDPGNYNFNMIALAQKAF Run BLAST on NCBI transcript from alignment at scaffold_92:235301..236495 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073482 ID=TCONS_00073482|Name=TCONS_00073482|organism=Clytia hemisphaerica|type=transcript|length=1195bp|location=Sequence derived from alignment at scaffold_92:235301..236495 (Clytia hemisphaerica)
AGagtaacaaaattattttatttcataaaaaacttaaTCATTTTGCTGAC
ATATTATTGTTTTATACTCTGTTATACTCCATAATATGATAATCctaaaa
gctgaaattttgatgtttgtgTTTAGTTAATtccaaaaggaaaaaaaaaa
caacatgtctAAACCAAGATGGCTGCCATTAGAGTCCAATCCAGATGTGA
TGAACAAATACACAGAAAACCTTGGTGTGGACATGTCTGTTTTGGCATAC
AGTGATGTCTATGGTTTTGAACCTGATCTTTTAATGATGGTTCCAAGGCC
TGTGGTATCTTTAGTTTTGCTTTTCCCAATCactgaaaattatgaaaact
tTCGCAAAGAGGAAGAAGAAAAGATAACAAAAGAAGGGCAAACAGTGAGC
GATAATGTGTATTTCACAAAGCAAACTGTAGGTAATGCTTGTGGAACTGT
TGGAATTATTCATGCTATAGCTAATAATGTAGAAAAGCTGACTTTCAAAG
ATGGTAGCGTCGTTAAAGACTACTTGGATAGCACAAAGTCGATGACACCA
GACGAAAGGGCTGTTGCTTTGGAAAAACATGAAGGTGTAACACGTTGTCA
TGGCGACAGTGCGCAGGAGGGACAAACAAAAGCCCCTTCCATCGATGAGA
AAGTTGATCTTCACTTCATTGCTTTTGTTGAGAAAGATGGTTTCTTGTAT
GAGCTTGATGGTCGCAAACCCTTCCCCATCAACCATGGGAAAACAAGTGC
TGATACTCTACTCGAAGATACTGCAGTGGTTTGTAAGAAATTTATGGAAA
GAGACCCTGGCAATTATAATTTTAACATGATTGCCCTAGCTCAAAAGGCT
TTCTAGCtataatttattttgttatacggGACCCTTGTAGATCTagaatt
tttaatgatattttggATTTTATTTAAGTAGATCTCTCTGCTTTGCTATT
AAGTAAGATATTATGAATATCTTAAAGGAGTATTTGTCTTTAGCTGTTAT
ATTTTATAggatttattcaaattatttaaaaatcaagattattattaaaa
aacaatGTTAGATTTGTTATCTTTTAGGATTTCAGGAAGGGTTTGAATGG
GCTCCTAGACTCCTAGTGAGACAGgtgctttgaaaaaaattgttctttac
AATTTGTGAGTAATGATGTGAAGAGGGTTAAAATTTCGTTTTACA Coding sequence (CDS) from alignment at scaffold_92:235301..236495 >TCONS_00073482 ID=TCONS_00073482|Name=TCONS_00073482|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_92:235301..236495 (Clytia hemisphaerica)
atgtctAAACCAAGATGGCTGCCATTAGAGTCCAATCCAGATGTGATGAA
CAAATACACAGAAAACCTTGGTGTGGACATGTCTGTTTTGGCATACAGTG
ATGTCTATGGTTTTGAACCTGATCTTTTAATGATGGTTCCAAGGCCTGTG
GTATCTTTAGTTTTGCTTTTCCCAATCactgaaaattatgaaaacttTCG
CAAAGAGGAAGAAGAAAAGATAACAAAAGAAGGGCAAACAGTGAGCGATA
ATGTGTATTTCACAAAGCAAACTGTAGGTAATGCTTGTGGAACTGTTGGA
ATTATTCATGCTATAGCTAATAATGTAGAAAAGCTGACTTTCAAAGATGG
TAGCGTCGTTAAAGACTACTTGGATAGCACAAAGTCGATGACACCAGACG
AAAGGGCTGTTGCTTTGGAAAAACATGAAGGTGTAACACGTTGTCATGGC
GACAGTGCGCAGGAGGGACAAACAAAAGCCCCTTCCATCGATGAGAAAGT
TGATCTTCACTTCATTGCTTTTGTTGAGAAAGATGGTTTCTTGTATGAGC
TTGATGGTCGCAAACCCTTCCCCATCAACCATGGGAAAACAAGTGCTGAT
ACTCTACTCGAAGATACTGCAGTGGTTTGTAAGAAATTTATGGAAAGAGA
CCCTGGCAATTATAATTTTAACATGATTGCCCTAGCTCAAAAGGCTTTCT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073482-exon-scaffold_92-1491911889:235301..236495 | TCONS_00073482-exon-scaffold_92-1491911889:235301..236495 | Clytia hemisphaerica | exon |
| TCONS_00073482-exon-scaffold_92-1510915933:235301..236495 | TCONS_00073482-exon-scaffold_92-1510915933:235301..236495 | Clytia hemisphaerica | exon |
| TCONS_00073482-exon-scaffold_92-1575043694:235301..236495 | TCONS_00073482-exon-scaffold_92-1575043694:235301..236495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:235301..236495 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001578 | Peptidase_C12_UCH |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0004843 |
thiol-dependent ubiquitin-specific protease activity |
Blast
BLAST of TCONS_00073482 vs. Swiss-Prot (Human)
Match: UCHL3 (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 7.555e-90 Identity = 140/229 (61.14%), Postives = 175/229 (76.42%), Query Frame = -2
Query: 355 MSKPRWLPLESNPDVMNKYTENLGVDMSVLAYSDVYGFEPDLLMMVPRPVVSLVLLFPITXXXXXXXXXXXXKITKEGQTVSDNVYFTKQTVGNACGTVGIIHAIANNVEKLTFKDGSVVKDYLDSTKSMTPDERAVALEKHEGVTRCHGDSAQEGQTKAPSIDEKVDLHFIAFVEKDGFLYELDGRKPFPINHGKTSADTLLEDTAVVCKKFMERDPGNYNFNMIALA 1041
M RWLPLE+NP+V N++ + LG+ + + DVYG +P+LL MVPRPV +++LLFPITE YE FR EEEEKI +GQ V+ +VYF KQT+ NACGT+G+IHAIANN +K+ F+ GS +K +L+ + SM+P+ERA LE ++ + H SA EGQT+APSIDEKVDLHFIA V DG LYELDGRKPFPINHG+TS +TLLED VCKKFMERDP FN IAL+
Sbjct: 1 MEGQRWLPLEANPEVTNQFLKQLGLHPN-WQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228
The following BLAST results are available for this feature:
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